Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011531

Physical Location & Seq

Genomic Coordinates Forward (+)

9383632 .. 9384929

Gene Structure 1298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011428

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGAGTATCGCCATACCTCTAGCAAAGAAAAGAAGGTTGATCAGCAGGGAGATAGTCTGGAAGCAGACCTGCAATGTGTGCGGAAAGAGAATGAAGCTCTAAGATTCCTACTTGAAGCTATGAGCAGCAAATACACTAGACTTGAGGCCCAGCTCCAACTGATCCGACTCGAACTCCAACAAAACAAGTCTTCAACACACGATGATCATGATCATCATGAGATGACTACTACTGGCTCAGGATGCTCATCATATGATATTTTTGATCCAACTGCAAACAAGAGGGCAAGAACAACTTCTTTTGCTCATTGTGATCACCAGCAGCATCATCACTTTCCAGTAGCCAATAAGACATCGCAGTTCCTAGTGAGAACCGACTCTAAAGACAACACCCTTATTGTGAAAGATGGATATCAATGGAGGAAGTACGGGCAGAAGGTGACCAAGGACAACCCATCATCCCCTCGTGCTTATTTCAGGTGCTCCATGGCTCCAACTTGCCCAGTCAAAAAGAAGGTACAGAGATGCATGCAGGACAAGTCAATCCTTGTGGCAACATATGAAGGCCACCACAACCATGACATCATCAATAACTCTAATTCCCTACTGCTTGGACAAATAATTTCCTCTTCATCTTCATCACCACCAGCCCCAGCTCCTCATAATCAAATTATGTCTCTTGATTTTCCTCCAGCAGTAGTACATGGATTGCTACAGAGCAGCAGTACTAGTACCGCAGCTGACCCTATTACTATGAGGAGTCCTTCTCGGCGGGAGCCTATCACGCTTGATCTTACTCTCTCCGGCTCTAAATCCAAATCCAATCAAGAAGGACGAGGAAGCCCTGCTGGTACTACTAGTACTAGTACTACTGATCAGACCTGTGAAAATGAGAAAATACAAGAATACGTTACTTCTCTAACCAAAGATCCGAATTTCACTGTAGCTTTAGCTGCTGCTGTTGCCCGCTCCATTAAAACTGATCAACCTGCACGCAACCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002237 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

335

Amino Acids

37.11

Weight (kDa)

8.59

Isoelectric Point (pI)

50.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	135 - 194	5.1e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41070 FvH4_2g41070 FvH4_2g41070
malus_domestica	MD00G1143600.v1.1 MD15G1039600.v1.1
prunus_persica	Prupe.1G393100_v2.0.a1
pyrus_communis	pycom08g04720 pycom08g04730 pycom08g04740 pycom15g03700
rosa_chinensis	RchiOBHm_Chr6g0299481
rosa_laevigata	RLG00000011428
rosa_multiflora	Rmu_sc0001184.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168640
rosa_rugosa	Rorug06G0289100
rosa_samantha	Rh6AG400400 Rh6BG409100 Rh6CG414600 Rh6DG401500
rosa_wichuraiana	Rw6G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	78, 997
AccBSI	CCGCTC	1 cut(s)	969
AciI	CCGC	4 cut(s)	82, 735, 772, 967
AclWI	GGATC	3 cut(s)	157, 260, 923
AcsI	RAATTY	1 cut(s)	934
AfaI	GTAC	8 cut(s)	428, 519, 702, 727, 733, 853, 862, 868
AgsI	TTSAA	2 cut(s)	116, 195
AhlI	ACTAGT	3 cut(s)	728, 857, 863
AluBI	AGCT	7 cut(s)	98, 119, 154, 656, 740, 947, 953
AluI	AGCT	7 cut(s)	98, 119, 154, 656, 740, 947, 953
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	1 cut(s)	681
AlwI	GGATC	3 cut(s)	157, 260, 923
AoxI	GGCC	2 cut(s)	147, 565
ApeKI	GCWGC	6 cut(s)	126, 322, 720, 737, 953, 956
ApoI	RAATTY	1 cut(s)	934
Asp700I	GAANNNNTTC	1 cut(s)	295
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	3 cut(s)	308, 451, 633
BauI	CACGAG	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	6 cut(s)	138, 334, 732, 749, 940, 943
BccI	CCATC	2 cut(s)	401, 463
BclI	TGATCA	6 cut(s)	40, 205, 211, 313, 874, 982
BcoDI	GTCTC	1 cut(s)	681
BcuI	ACTAGT	3 cut(s)	728, 857, 863
BfaI	CTAG	6 cut(s)	21, 138, 365, 729, 858, 864
BfmI	CTRYAG	2 cut(s)	713, 942
BfuAI	ACCTGC	2 cut(s)	78, 997
BisI	GCNGC	6 cut(s)	127, 323, 721, 738, 954, 957
BlsI	GCNGC	6 cut(s)	128, 324, 722, 739, 955, 958
BmcAI	AGTACT	3 cut(s)	727, 862, 868
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	492, 777
BmrI	ACTGGG	1 cut(s)	497
BmsI	GCATC	3 cut(s)	233, 334, 515
BmuI	ACTGGG	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	183
BplI	GAGNNNNNCTC	2 cut(s)	751, 783
BpmI	CTGGAG	1 cut(s)	675
Bpu10I	CCTNAGC	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	164
BsaBI	GATNNNNATC	3 cut(s)	210, 247, 411
BsaJI	CCNNGG	2 cut(s)	444, 486
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bse1I	ACTGG	3 cut(s)	238, 338, 503
Bse3DI	GCAATG	1 cut(s)	80
Bse8I	GATNNNNATC	3 cut(s)	210, 247, 411
BseDI	CCNNGG	2 cut(s)	444, 486
BseGI	GGATG	2 cut(s)	248, 458
BseJI	GATNNNNATC	3 cut(s)	210, 247, 411
BseMI	GCAATG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	3 cut(s)	238, 338, 503
BseRI	GAGGAG	2 cut(s)	648, 772
BseXI	GCAGC	6 cut(s)	138, 334, 732, 749, 940, 943
BseYI	CCCAGC	2 cut(s)	150, 652
BsgI	GTGCAG	1 cut(s)	975
BshFI	GGCC	2 cut(s)	149, 567
BsiHKAI	GWGCWC	1 cut(s)	485
BsiSI	CCGG	1 cut(s)	804
BsmAI	GTCTC	1 cut(s)	681
BsnI	GGCC	2 cut(s)	149, 567
Bsp1286I	GDGCHC	1 cut(s)	485
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	4 cut(s)	82, 735, 772, 967
BspANI	GGCC	2 cut(s)	149, 567
BspCNI	CTCAG	1 cut(s)	251
BspHI	TCATGA	2 cut(s)	208, 217
BspLI	GGNNCC	2 cut(s)	492, 777
BspMI	ACCTGC	2 cut(s)	78, 997
BspPI	GGATC	3 cut(s)	157, 260, 923
BsrBI	CCGCTC	1 cut(s)	969
BsrDI	GCAATG	1 cut(s)	80
BsrI	ACTGG	3 cut(s)	238, 338, 503
BssECI	CCNNGG	2 cut(s)	444, 486
BssSI	CACGAG	1 cut(s)	465
BssT1I	CCWWGG	2 cut(s)	444, 486
Bst2BI	CACGAG	1 cut(s)	465
Bst4CI	ACNGT	1 cut(s)	943
Bst6I	CTCTTC	1 cut(s)	634
BstAPI	GCANNNNNTGC	1 cut(s)	79
BstC8I	GCNNGC	3 cut(s)	530, 967, 994
BstDEI	CTNAG	2 cut(s)	101, 238
BstDSI	CCRYGG	1 cut(s)	486
BstEII	GGTNACC	1 cut(s)	439
BstF5I	GGATG	2 cut(s)	248, 458
BstMAI	GTCTC	1 cut(s)	681
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 243, 784, 953, 962
BstNSI	RCATGY	1 cut(s)	532
BstPI	GGTNACC	1 cut(s)	439
BstSFI	CTRYAG	2 cut(s)	713, 942
BstV1I	GCAGC	6 cut(s)	138, 334, 732, 749, 940, 943
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	928
BstYI	RGATCY	1 cut(s)	928
BsuRI	GGCC	2 cut(s)	149, 567
BtgI	CCRYGG	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	248, 458
BtsIMutI	CAGTG	1 cut(s)	939
BveI	ACCTGC	2 cut(s)	78, 997
Cac8I	GCNNGC	3 cut(s)	530, 967, 994
CciI	TCATGA	2 cut(s)	208, 217
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	8 cut(s)	427, 518, 701, 726, 732, 852, 861, 867
CspCI	CAANNNNNGTGG	2 cut(s)	531, 566
CviAII	CATG	6 cut(s)	209, 218, 487, 529, 578, 704
CviQI	GTAC	8 cut(s)	427, 518, 701, 726, 732, 852, 861, 867
DdeI	CTNAG	2 cut(s)	101, 238
Eam1104I	CTCTTC	1 cut(s)	634
EarI	CTCTTC	1 cut(s)	634
Eco130I	CCWWGG	2 cut(s)	444, 486
Eco32I	GATATC	1 cut(s)	413
Eco91I	GGTNACC	1 cut(s)	439
EcoO65I	GGTNACC	1 cut(s)	439
EcoRV	GATATC	1 cut(s)	413
EcoT14I	CCWWGG	2 cut(s)	444, 486
EcoT22I	ATGCAT	1 cut(s)	530
ErhI	CCWWGG	2 cut(s)	444, 486
FaeI	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
FalI	AAGNNNNNCTT	2 cut(s)	280, 312
FatI	CATG	6 cut(s)	208, 217, 486, 528, 577, 703
FauI	CCCGC	2 cut(s)	765, 974
FauNDI	CATATG	2 cut(s)	253, 559
FbaI	TGATCA	6 cut(s)	40, 205, 211, 313, 874, 982
Fnu4HI	GCNGC	6 cut(s)	127, 323, 721, 738, 954, 957
FokI	GGATG	2 cut(s)	255, 445
Fsp4HI	GCNGC	6 cut(s)	127, 323, 721, 738, 954, 957
FspBI	CTAG	6 cut(s)	21, 138, 365, 729, 858, 864
GluI	GCNGC	6 cut(s)	127, 323, 721, 738, 954, 957
GsaI	CCCAGC	2 cut(s)	154, 656
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	2 cut(s)	149, 567
HapII	CCGG	1 cut(s)	804
Hin1II	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
HinfI	GANTC	4 cut(s)	105, 168, 377, 760
HpaII	CCGG	1 cut(s)	804
HphI	GGTGA	3 cut(s)	308, 451, 633
Hpy188I	TCNGA	3 cut(s)	167, 879, 933
Hpy188III	TCNNGA	6 cut(s)	59, 209, 218, 240, 680, 827
HpyAV	CCTTC	6 cut(s)	28, 430, 508, 557, 774, 824
HpyCH4III	ACNGT	1 cut(s)	943
HpyCH4IV	ACGT	1 cut(s)	909
HpyCH4V	TGCA	5 cut(s)	73, 275, 528, 532, 992
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 243, 784, 953, 962
HpyF3I	CTNAG	2 cut(s)	101, 238
HpySE526I	ACGT	1 cut(s)	909
Hsp92II	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
Ksp22I	TGATCA	6 cut(s)	40, 205, 211, 313, 874, 982
LmnI	GCTCC	6 cut(s)	159, 488, 496, 661, 775, 974
Lsp1109I	GCAGC	6 cut(s)	138, 334, 732, 749, 940, 943
LweI	GCATC	3 cut(s)	233, 334, 515
MaeI	CTAG	6 cut(s)	21, 138, 365, 729, 858, 864
MaeII	ACGT	1 cut(s)	909
MaeIII	GTNAC	2 cut(s)	439, 910
MbiI	CCGCTC	1 cut(s)	969
MboII	GAAGA	3 cut(s)	183, 621, 627
MflI	RGATCY	1 cut(s)	928
MhlI	GDGCHC	1 cut(s)	485
MluCI	AATT	4 cut(s)	598, 621, 669, 934
MlyI	GAGTC	3 cut(s)	162, 371, 769
MmeI	TCCRAC	5 cut(s)	181, 190, 202, 293, 518
Mph1103I	ATGCAT	1 cut(s)	530
MroXI	GAANNNNTTC	1 cut(s)	295
MseI	TTAA	1 cut(s)	975
MslI	CAYNNNNRTG	1 cut(s)	576
MspA1I	CMGCKG	1 cut(s)	740
MspI	CCGG	1 cut(s)	804
MwoI	GCNNNNNNNGC	5 cut(s)	79, 243, 784, 953, 962
NcoI	CCATGG	1 cut(s)	486
NdeI	CATATG	2 cut(s)	253, 559
NlaIII	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
NlaIV	GGNNCC	2 cut(s)	492, 777
NmeAIII	GCCGAG	1 cut(s)	748
NmuCI	GTSAC	1 cut(s)	439
NsiI	ATGCAT	1 cut(s)	530
NspI	RCATGY	1 cut(s)	532
PaeI	GCATGC	1 cut(s)	532
PagI	TCATGA	2 cut(s)	208, 217
PdmI	GAANNNNTTC	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	105
PkrI	GCNGC	6 cut(s)	128, 324, 722, 739, 955, 958
PleI	GAGTC	3 cut(s)	162, 371, 768
PpsI	GAGTC	3 cut(s)	162, 371, 768
PspEI	GGTNACC	1 cut(s)	439
PspFI	CCCAGC	2 cut(s)	150, 652
PspN4I	GGNNCC	2 cut(s)	492, 777
PspPI	GGNCC	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	928
PvuII	CAGCTG	1 cut(s)	740
RsaI	GTAC	8 cut(s)	428, 519, 702, 727, 733, 853, 862, 868
RsaNI	GTAC	8 cut(s)	427, 518, 701, 726, 732, 852, 861, 867
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	1 cut(s)	975
SatI	GCNGC	6 cut(s)	127, 323, 721, 738, 954, 957
Sau96I	GGNCC	1 cut(s)	148
ScaI	AGTACT	3 cut(s)	727, 862, 868
SchI	GAGTC	3 cut(s)	162, 371, 769
SduI	GDGCHC	1 cut(s)	485
SfaNI	GCATC	3 cut(s)	233, 334, 515
SfcI	CTRYAG	2 cut(s)	713, 942
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
SpeI	ACTAGT	3 cut(s)	728, 857, 863
SphI	GCATGC	1 cut(s)	532
Sse9I	AATT	4 cut(s)	598, 621, 669, 934
SsiI	CCGC	4 cut(s)	82, 735, 772, 967
SspMI	CTAG	6 cut(s)	21, 138, 365, 729, 858, 864
StyI	CCWWGG	2 cut(s)	444, 486
TaaI	ACNGT	1 cut(s)	943
TaiI	ACGT	1 cut(s)	912
TaqI	TCGA	1 cut(s)	171
TasI	AATT	4 cut(s)	598, 621, 669, 934
TatI	WGTACW	4 cut(s)	700, 725, 860, 866
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	1 cut(s)	975
Tru9I	TTAA	1 cut(s)	975
TscAI	CASTG	1 cut(s)	946
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	6 cut(s)	126, 322, 720, 737, 953, 956
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	4 cut(s)	108, 576, 621, 627
TspRI	CASTG	1 cut(s)	946
XapI	RAATTY	1 cut(s)	934
XceI	RCATGY	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	295
XspI	CTAG	6 cut(s)	21, 138, 365, 729, 858, 864
ZrmI	AGTACT	3 cut(s)	727, 862, 868
Zsp2I	ATGCAT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.