Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0011531

Physical Location & Seq

Genomic Coordinates Reverse (-)

3569830 .. 3570947

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g04730.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCTGATGATCGTGACCAGGTTGTAGACAGTGTTCAAGAAGACTTGCAACGTTTGAGGAAAGAGAATGAAACCCTAAGAGTCCTGCTTCAACACTTGACCACCAAGCGCTCAACACTTGAGCAGCAGCAGCTGCGCCAAATGCATATCCAACAACAACCGTGTGATCATCGATATATCATGACCACGAATATCAACAGCGCGATTACGAGCAAGAGACAGAGAACTGATGAGCATCCCGATCAGTTTCCGGCATACCACAATAAGACATCACAGTTCCTAGTGAAATCCGATTCTAAAGACAACAGCCTTGTAAGTCAAGTCCTCCCTTATAATATTGTGAAGGATGGATATCAATGGAGGAAATATGGACAGAAGGTCACCAAAGACAACCCTTCATCCCCTCGAGCTTATTTCAGGTGTTCCTTCGCTCCTCGATGCCCTGTCAAAAAGAAGGTACAGAGGTGCATAGAGGATGATTCCATCCTCGTGGCGACATACGAAGGAGAGCACAACCACGAAGCCATCAATGATTCTGTACCATTTGGACAATTTTCATGTTCACATAAGAACATAATTGTGCCCGTTAATTTTCCTTCAAGTGGTATCAAAACTAATAATGACGTGATTAATATAAGTCCCTCTCTGCCGGAGCCTGTAACGCTCGATCTTAGTCTCTCGGGATCCAGTAATCAAGAAAATGGAGGATTGGGAAGCCCTCAAAGCATGGTTAGCCCCGGAAGAGTTGAGGATTACGTTGCTTCGTTAACCAAGGATCCTAATTTCACACAAACTTTAGCTGCTGCAGTTGCACGTTCGATTGCAAGACCTGCAAATAGACCAAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002237 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

284

Amino Acids

31.87

Weight (kDa)

8.53

Isoelectric Point (pI)

64.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41070 FvH4_2g41070 FvH4_2g41070
malus_domestica	MD00G1143600.v1.1 MD15G1039600.v1.1
prunus_persica	Prupe.1G393100_v2.0.a1
pyrus_communis	pycom08g04720 pycom08g04730 pycom08g04740 pycom15g03700
rosa_chinensis	RchiOBHm_Chr6g0299481
rosa_laevigata	RLG00000011428
rosa_multiflora	Rmu_sc0001184.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168640
rosa_rugosa	Rorug06G0289100
rosa_samantha	Rh6AG400400 Rh6BG409100 Rh6CG414600 Rh6DG401500
rosa_wichuraiana	Rw6G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
Acc36I	ACCTGC	1 cut(s)	838
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	1 cut(s)	203
AclI	AACGTT	1 cut(s)	52
AclWI	GGATC	4 cut(s)	678, 691, 770, 783
AcsI	RAATTY	1 cut(s)	844
AfaI	GTAC	2 cut(s)	459, 540
AfeI	AGCGCT	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgsI	TTSAA	3 cut(s)	38, 92, 600
AhdI	GACNNNNNGTC	1 cut(s)	377
AjiI	CACGTC	1 cut(s)	625
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	3 cut(s)	133, 410, 800
AluI	AGCT	3 cut(s)	133, 410, 800
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	2 cut(s)	211, 680
AlwI	GGATC	4 cut(s)	678, 691, 770, 783
AlwNI	CAGNNNCTG	1 cut(s)	133
Ama87I	CYCGRG	2 cut(s)	405, 679
Aor51HI	AGCGCT	1 cut(s)	110
ApeKI	GCWGC	6 cut(s)	124, 127, 130, 133, 800, 803
ApoI	RAATTY	1 cut(s)	844
AseI	ATTAAT	1 cut(s)	630
AspLEI	GCGC	3 cut(s)	111, 138, 203
AsuC2I	CCSGG	1 cut(s)	738
AsuHPI	GGTGA	1 cut(s)	373
AvaI	CYCGRG	2 cut(s)	405, 679
BaeGI	GKGCMC	1 cut(s)	585
BaeI	ACNNNNGTAYC	2 cut(s)	449, 482
BamHI	GGATCC	2 cut(s)	683, 775
BauI	CACGAG	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	6 cut(s)	120, 136, 139, 142, 787, 790
BccI	CCATC	3 cut(s)	341, 491, 533
BciT130I	CCWGG	1 cut(s)	20
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	738
BcoDI	GTCTC	2 cut(s)	211, 680
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	804
BfoI	RGCGCY	1 cut(s)	112
BfuAI	ACCTGC	1 cut(s)	838
BisI	GCNGC	6 cut(s)	125, 128, 131, 134, 801, 804
BlsI	GCNGC	6 cut(s)	126, 129, 132, 135, 802, 805
Bme1390I	CCNGG	2 cut(s)	20, 738
BmeRI	GACNNNNNGTC	1 cut(s)	377
BmeT110I	CYCGRG	2 cut(s)	405, 679
BmgBI	CACGTC	1 cut(s)	625
BmiI	GGNNCC	3 cut(s)	654, 685, 777
BmrFI	CCNGG	2 cut(s)	20, 738
BmsI	GCATC	2 cut(s)	244, 428
BpiI	GAAGAC	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	738
Bsa29I	ATCGAT	1 cut(s)	172
BsaBI	GATNNNNATC	2 cut(s)	234, 351
BsaJI	CCNNGG	2 cut(s)	736, 771
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse1I	ACTGG	1 cut(s)	687
Bse8I	GATNNNNATC	2 cut(s)	234, 351
BseBI	CCWGG	1 cut(s)	20
BseCI	ATCGAT	1 cut(s)	172
BseDI	CCNNGG	2 cut(s)	736, 771
BseGI	GGATG	5 cut(s)	235, 352, 398, 481, 483
BseJI	GATNNNNATC	2 cut(s)	234, 351
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseNI	ACTGG	1 cut(s)	687
BseRI	GAGGAG	1 cut(s)	423
BseSI	GKGCMC	1 cut(s)	585
BseXI	GCAGC	6 cut(s)	120, 136, 139, 142, 787, 790
Bsh1236I	CGCG	1 cut(s)	203
BshVI	ATCGAT	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	513
BsiHKCI	CYCGRG	2 cut(s)	405, 679
BsiSI	CCGG	3 cut(s)	251, 650, 738
BslFI	GGGAC	1 cut(s)	624
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	2 cut(s)	211, 680
BsmFI	GGGAC	1 cut(s)	624
BsoBI	CYCGRG	2 cut(s)	405, 679
Bsp1286I	GDGCHC	2 cut(s)	513, 585
Bsp143I	GATC	6 cut(s)	10, 166, 241, 667, 683, 775
BspDI	ATCGAT	1 cut(s)	172
BspFNI	CGCG	1 cut(s)	203
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	654, 685, 777
BspMAI	CTGCAG	1 cut(s)	808
BspMI	ACCTGC	1 cut(s)	838
BspPI	GGATC	4 cut(s)	678, 691, 770, 783
BsrI	ACTGG	1 cut(s)	687
BssECI	CCNNGG	2 cut(s)	736, 771
BssMI	GATC	6 cut(s)	10, 166, 241, 667, 683, 775
BssSI	CACGAG	1 cut(s)	488
BssT1I	CCWWGG	1 cut(s)	771
Bst2BI	CACGAG	1 cut(s)	488
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	3 cut(s)	32, 162, 276
Bst6I	CTCTTC	1 cut(s)	736
BstAPI	GCANNNNNTGC	2 cut(s)	133, 830
BstDEI	CTNAG	2 cut(s)	77, 671
BstEII	GGTNACC	1 cut(s)	379
BstF5I	GGATG	5 cut(s)	235, 352, 398, 481, 483
BstFNI	CGCG	1 cut(s)	203
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	3 cut(s)	111, 138, 203
BstKTI	GATC	6 cut(s)	13, 169, 244, 670, 686, 778
BstMAI	GTCTC	2 cut(s)	211, 680
BstMBI	GATC	6 cut(s)	10, 166, 241, 667, 683, 775
BstMWI	GCNNNNNNNGC	8 cut(s)	130, 133, 142, 661, 723, 732, 809, 830
BstNI	CCWGG	1 cut(s)	20
BstPI	GGTNACC	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	18, 736
BstSFI	CTRYAG	1 cut(s)	804
BstSLI	GKGCMC	1 cut(s)	585
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	6 cut(s)	120, 136, 139, 142, 787, 790
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	2 cut(s)	683, 775
BstXI	CCANNNNNNTGG	1 cut(s)	490
BstYI	RGATCY	2 cut(s)	683, 775
Bsu15I	ATCGAT	1 cut(s)	172
BsuTUI	ATCGAT	1 cut(s)	172
BtrI	CACGTC	1 cut(s)	625
BtsCI	GGATG	5 cut(s)	235, 352, 398, 481, 483
BtsIMutI	CAGTG	1 cut(s)	37
BveI	ACCTGC	1 cut(s)	838
CaiI	CAGNNNCTG	1 cut(s)	133
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	3 cut(s)	111, 138, 203
ClaI	ATCGAT	1 cut(s)	172
CsiI	ACCWGGT	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	458, 539
CviAII	CATG	3 cut(s)	181, 558, 727
CviJI	RGCY	9 cut(s)	5, 133, 309, 410, 524, 655, 717, 735, 800
CviKI_1	RGCY	9 cut(s)	5, 133, 309, 410, 524, 655, 717, 735, 800
CviQI	GTAC	2 cut(s)	458, 539
DdeI	CTNAG	2 cut(s)	77, 671
DpnI	GATC	6 cut(s)	12, 168, 243, 669, 685, 777
DpnII	GATC	6 cut(s)	10, 166, 241, 667, 683, 775
DriI	GACNNNNNGTC	1 cut(s)	377
Eam1104I	CTCTTC	1 cut(s)	736
Eam1105I	GACNNNNNGTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	736
Eco130I	CCWWGG	1 cut(s)	771
Eco32I	GATATC	1 cut(s)	353
Eco47III	AGCGCT	1 cut(s)	110
Eco88I	CYCGRG	2 cut(s)	405, 679
Eco91I	GGTNACC	1 cut(s)	379
EcoO65I	GGTNACC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	18
EcoRV	GATATC	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	771
EcoT22I	ATGCAT	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	771
FaeI	CATG	3 cut(s)	184, 561, 730
FaqI	GGGAC	1 cut(s)	624
FatI	CATG	3 cut(s)	180, 557, 726
FbaI	TGATCA	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	6 cut(s)	125, 128, 131, 134, 801, 804
FokI	GGATG	5 cut(s)	222, 359, 385, 470, 488
Fsp4HI	GCNGC	6 cut(s)	125, 128, 131, 134, 801, 804
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	3 cut(s)	110, 137, 202
GluI	GCNGC	6 cut(s)	125, 128, 131, 134, 801, 804
HaeII	RGCGCY	1 cut(s)	112
HapII	CCGG	3 cut(s)	251, 650, 738
HhaI	GCGC	3 cut(s)	111, 138, 203
Hin1II	CATG	3 cut(s)	184, 561, 730
Hin6I	GCGC	3 cut(s)	109, 136, 201
HinP1I	GCGC	3 cut(s)	109, 136, 201
HincII	GTYRAC	1 cut(s)	768
HindII	GTYRAC	1 cut(s)	768
HinfI	GANTC	4 cut(s)	81, 293, 479, 533
HpaI	GTTAAC	1 cut(s)	768
HpaII	CCGG	3 cut(s)	251, 650, 738
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	3 cut(s)	28, 563, 768
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	6 cut(s)	14, 38, 181, 239, 681, 695
Hpy8I	GTNNAC	3 cut(s)	28, 563, 768
HpyAV	CCTTC	7 cut(s)	337, 370, 405, 436, 448, 497, 606
HpyCH4III	ACNGT	3 cut(s)	32, 162, 276
HpyCH4IV	ACGT	4 cut(s)	52, 624, 756, 814
HpyCH4V	TGCA	7 cut(s)	49, 145, 468, 806, 812, 824, 833
HpyF10VI	GCNNNNNNNGC	8 cut(s)	130, 133, 142, 661, 723, 732, 809, 830
HpyF3I	CTNAG	2 cut(s)	77, 671
HpySE526I	ACGT	4 cut(s)	52, 624, 756, 814
Hsp92II	CATG	3 cut(s)	184, 561, 730
HspAI	GCGC	3 cut(s)	109, 136, 201
Ksp22I	TGATCA	1 cut(s)	166
KspAI	GTTAAC	1 cut(s)	768
Kzo9I	GATC	6 cut(s)	10, 166, 241, 667, 683, 775
LmnI	GCTCC	2 cut(s)	436, 652
Lsp1109I	GCAGC	6 cut(s)	120, 136, 139, 142, 787, 790
LweI	GCATC	2 cut(s)	244, 428
MabI	ACCWGGT	1 cut(s)	18
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	4 cut(s)	52, 624, 756, 814
MaeIII	GTNAC	3 cut(s)	14, 379, 658
MalI	GATC	6 cut(s)	12, 168, 243, 669, 685, 777
MboI	GATC	6 cut(s)	10, 166, 241, 667, 683, 775
MboII	GAAGA	2 cut(s)	53, 753
MflI	RGATCY	2 cut(s)	683, 775
MhlI	GDGCHC	2 cut(s)	513, 585
MluCI	AATT	5 cut(s)	551, 576, 589, 781, 844
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	175
Mph1103I	ATGCAT	1 cut(s)	147
MseI	TTAA	3 cut(s)	588, 630, 767
MslI	CAYNNNNRTG	2 cut(s)	488, 578
MspA1I	CMGCKG	1 cut(s)	133
MspI	CCGG	3 cut(s)	251, 650, 738
MspR9I	CCNGG	2 cut(s)	20, 738
MvaI	CCWGG	1 cut(s)	20
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	8 cut(s)	130, 133, 142, 661, 723, 732, 809, 830
NciI	CCSGG	1 cut(s)	738
NdeII	GATC	6 cut(s)	10, 166, 241, 667, 683, 775
NlaIII	CATG	3 cut(s)	184, 561, 730
NlaIV	GGNNCC	3 cut(s)	654, 685, 777
NmuCI	GTSAC	2 cut(s)	14, 379
NsiI	ATGCAT	1 cut(s)	147
PaeR7I	CTCGAG	1 cut(s)	405
PagI	TCATGA	1 cut(s)	180
PfeI	GAWTC	3 cut(s)	293, 479, 533
PkrI	GCNGC	6 cut(s)	126, 129, 132, 135, 802, 805
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PshBI	ATTAAT	1 cut(s)	630
PsiI	TTATAA	1 cut(s)	333
Psp1406I	AACGTT	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	18
PspEI	GGTNACC	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	3 cut(s)	654, 685, 777
PspXI	VCTCGAGB	1 cut(s)	405
PsrI	GAACNNNNNNTAC	2 cut(s)	18, 50
PstI	CTGCAG	1 cut(s)	808
PstNI	CAGNNNCTG	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	683, 775
PvuII	CAGCTG	1 cut(s)	133
RsaI	GTAC	2 cut(s)	459, 540
RsaNI	GTAC	2 cut(s)	458, 539
RseI	CAYNNNNRTG	2 cut(s)	488, 578
SaqAI	TTAA	3 cut(s)	588, 630, 767
SatI	GCNGC	6 cut(s)	125, 128, 131, 134, 801, 804
Sau3AI	GATC	6 cut(s)	10, 166, 241, 667, 683, 775
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	2 cut(s)	20, 738
SduI	GDGCHC	2 cut(s)	513, 585
SexAI	ACCWGGT	1 cut(s)	18
SfaNI	GCATC	2 cut(s)	244, 428
SfcI	CTRYAG	1 cut(s)	804
Sfr274I	CTCGAG	1 cut(s)	405
SlaI	CTCGAG	1 cut(s)	405
SmiMI	CAYNNNNRTG	2 cut(s)	488, 578
SmlI	CTYRAG	2 cut(s)	119, 405
SmoI	CTYRAG	2 cut(s)	119, 405
Sse9I	AATT	5 cut(s)	551, 576, 589, 781, 844
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	2 cut(s)	18, 736
StyI	CCWWGG	1 cut(s)	771
TaaI	ACNGT	3 cut(s)	32, 162, 276
TaiI	ACGT	4 cut(s)	55, 627, 759, 817
TaqI	TCGA	5 cut(s)	172, 406, 436, 666, 818
TasI	AATT	5 cut(s)	551, 576, 589, 781, 844
TfiI	GAWTC	3 cut(s)	293, 479, 533
Tru1I	TTAA	3 cut(s)	588, 630, 767
Tru9I	TTAA	3 cut(s)	588, 630, 767
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	2 cut(s)	14, 379
TseI	GCWGC	6 cut(s)	124, 127, 130, 133, 800, 803
Tsp45I	GTSAC	2 cut(s)	14, 379
TspDTI	ATGAA	4 cut(s)	84, 387, 546, 837
TspRI	CASTG	1 cut(s)	37
VspI	ATTAAT	1 cut(s)	630
XapI	RAATTY	1 cut(s)	844
XhoI	CTCGAG	1 cut(s)	405
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.