Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010296

Physical Location & Seq

Genomic Coordinates Forward (+)

29149184 .. 29151201

Gene Structure 2018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g41100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCAGAAGCACCAAAGCCCAACTCGGCCACCAAGAACGAGTCGCAGCTGAGTCTTGACAAGGTGAGGCAGGCTTTGATCAGCCAAGAAGACACCATCGTGTATAGGCTGATCGAGAGAGCAGCCTTCCCTCTCAACTCTCCCACCTACCACCGCAAATTTTCATCTTCTCCTTCTCTGTTTCACTTCCTTGTCAAGGGCACCGAGGCCCTTCAATCTCAGGCCGGTAGATATGTGATCCCAGAACAACTACCCTTTTTCCCAGAAAACTTGCCTCCTTCGTTGCTGCCGCCTCCTGCTGAGCCACCGGTATTGCATCGTGCTGCAGCTTCAATTAATATTAACGAGAAGATATTGGATATATATTTGAAACAATTTCTTCCTCTGTTGGCTGTCCCCGGTGATGATGGAAACTATGAAGCAACTGCCTCCAGCGATCTTGAGTGCTTACAGGCAATCTCGAGTAGGATCCATTATGGATACTATGTTGCTGAGGTCAAATTCAGGGATGCTCCTCAAGATTATGAGCCTGCCATTCGCGCTCAGGACAGAGAAGGTCTGATGAAATTGTTGACATTTACGGCTGTGGAAGAGAAGGTGAAGAAGAGAGTTGAGAAGAAAGCAGTGATCTTTGGGCAAGAAGTGAGCCTTGACAGCGACACTAATGGTGTAAAACAAAATGGAACTGCAAATGGGAAATACAAGGTTGATCCGTCTCTAGTTTCTCGTCTCTATGGAGAATGGGTTATGCCTCTCACAAAGCTTGTTCAGGTCGAGTACCTCCTTAGACGCCTAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

267

Amino Acids

29.86

Weight (kDa)

6.47

Isoelectric Point (pI)

53.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	140 - 257	5.7e-07	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10870
fragaria_vesca	FvH4_2g41100
malus_domestica	MD08G1057400.v1.1 MD15G1040000.v1.1
prunus_persica	Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1
pyrus_communis	pycom08g04690 pycom15g03750
rosa_chinensis	RchiOBHm_Chr6g0299441
rosa_laevigata	RLG00000011431
rosa_multiflora	Rmu_sc0017526.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168680
rosa_rugosa	Rorug06G0288200 Rorug06G0288300
rosa_samantha	Rh6AG400100 Rh6BG408700 Rh6CG414200 Rh6DG401200
rosa_wichuraiana	Rw6G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AccII	CGCG	1 cut(s)	540
AciI	CCGC	2 cut(s)	154, 290
AclWI	GGATC	4 cut(s)	232, 463, 476, 704
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	2 cut(s)	158, 500
AcyI	GRCGYC	1 cut(s)	790
AfaI	GTAC	1 cut(s)	779
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgeI	ACCGGT	1 cut(s)	307
AgsI	TTSAA	3 cut(s)	215, 333, 370
AleI	CACNNNNGTG	1 cut(s)	98
AluBI	AGCT	3 cut(s)	49, 329, 763
AluI	AGCT	3 cut(s)	49, 329, 763
Alw26I	GTCTC	2 cut(s)	720, 734
AlwI	GGATC	4 cut(s)	232, 463, 476, 704
Ama87I	CYCGRG	1 cut(s)	460
AoxI	GGCC	3 cut(s)	27, 207, 222
ApeKI	GCWGC	5 cut(s)	46, 122, 286, 323, 326
ApoI	RAATTY	2 cut(s)	158, 500
AseI	ATTAAT	1 cut(s)	336
AsiGI	ACCGGT	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	542
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	1 cut(s)	399
AsuHPI	GGTGA	3 cut(s)	76, 413, 610
AvaI	CYCGRG	1 cut(s)	460
BaeGI	GKGCMC	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	492
BbvI	GCAGC	5 cut(s)	58, 134, 273, 310, 338
BccI	CCATC	2 cut(s)	104, 401
BceAI	ACGGC	1 cut(s)	597
BciVI	GTATCC	1 cut(s)	473
BclI	TGATCA	1 cut(s)	78
BcnI	CCSGG	1 cut(s)	399
BcoDI	GTCTC	2 cut(s)	720, 734
BfaI	CTAG	3 cut(s)	719, 794, 799
BfmI	CTRYAG	1 cut(s)	324
BfuI	GTATCC	1 cut(s)	473
BisI	GCNGC	6 cut(s)	47, 123, 287, 290, 324, 327
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	6 cut(s)	48, 124, 288, 291, 325, 328
Bme1390I	CCNGG	1 cut(s)	399
BmeT110I	CYCGRG	1 cut(s)	460
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	202, 470
BmrFI	CCNGG	1 cut(s)	399
BmsI	GCATC	2 cut(s)	325, 499
BpiI	GAAGAC	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	415
Bpu10I	CCTNAGC	2 cut(s)	492, 543
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	2 cut(s)	461, 501
BpuMI	CCSGG	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	790
BsaJI	CCNNGG	2 cut(s)	204, 397
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	2 cut(s)	729, 759
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse118I	RCCGGY	2 cut(s)	224, 307
BseDI	CCNNGG	2 cut(s)	204, 397
BseGI	GGATG	1 cut(s)	514
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	5 cut(s)	41, 233, 291, 483, 557
BseRI	GAGGAG	1 cut(s)	504
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	5 cut(s)	58, 134, 273, 310, 338
Bsh1236I	CGCG	1 cut(s)	540
BshFI	GGCC	3 cut(s)	29, 209, 224
BshNI	GGYRCC	1 cut(s)	200
BshTI	ACCGGT	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	460
BsiSI	CCGG	3 cut(s)	225, 308, 399
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	2 cut(s)	720, 734
BsmBI	CGTCTC	2 cut(s)	720, 734
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	3 cut(s)	29, 209, 224
BsoBI	CYCGRG	1 cut(s)	460
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	7 cut(s)	78, 111, 237, 436, 468, 627, 709
Bsp1720I	GCTNAGC	1 cut(s)	300
BspACI	CCGC	2 cut(s)	154, 290
BspANI	GGCC	3 cut(s)	29, 209, 224
BspCNI	CTCAG	5 cut(s)	42, 232, 292, 484, 556
BspFNI	CGCG	1 cut(s)	540
BspLI	GGNNCC	2 cut(s)	202, 470
BspMAI	CTGCAG	1 cut(s)	328
BspPI	GGATC	4 cut(s)	232, 463, 476, 704
BspT107I	GGYRCC	1 cut(s)	200
BsrFI	RCCGGY	2 cut(s)	224, 307
BssAI	RCCGGY	2 cut(s)	224, 307
BssECI	CCNNGG	2 cut(s)	204, 397
BssMI	GATC	7 cut(s)	78, 111, 237, 436, 468, 627, 709
BssNI	GRCGYC	1 cut(s)	790
Bst6I	CTCTTC	2 cut(s)	585, 599
BstACI	GRCGYC	1 cut(s)	790
BstC8I	GCNNGC	2 cut(s)	72, 531
BstDEI	CTNAG	6 cut(s)	50, 219, 300, 492, 543, 785
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	514
BstFNI	CGCG	1 cut(s)	540
BstHHI	GCGC	1 cut(s)	542
BstKTI	GATC	7 cut(s)	81, 114, 240, 439, 471, 630, 712
BstMAI	GTCTC	2 cut(s)	720, 734
BstMBI	GATC	7 cut(s)	78, 111, 237, 436, 468, 627, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	539, 654
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	1 cut(s)	324
BstSLI	GKGCMC	1 cut(s)	203
BstUI	CGCG	1 cut(s)	540
BstV1I	GCAGC	5 cut(s)	58, 134, 273, 310, 338
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	468
BstYI	RGATCY	1 cut(s)	468
BsuI	GTATCC	1 cut(s)	473
BsuRI	GGCC	3 cut(s)	29, 209, 224
BtsCI	GGATG	1 cut(s)	514
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	1 cut(s)	630
Cac8I	GCNNGC	2 cut(s)	72, 531
CfoI	GCGC	1 cut(s)	542
Cfr10I	RCCGGY	2 cut(s)	224, 307
Cfr13I	GGNCC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	778
CspAI	ACCGGT	1 cut(s)	307
CspCI	CAANNNNNGTGG	2 cut(s)	294, 329
CviQI	GTAC	1 cut(s)	778
DdeI	CTNAG	6 cut(s)	50, 219, 300, 492, 543, 785
DpnI	GATC	7 cut(s)	80, 113, 239, 438, 470, 629, 711
DpnII	GATC	7 cut(s)	78, 111, 237, 436, 468, 627, 709
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	585, 599
EarI	CTCTTC	2 cut(s)	585, 599
Eco88I	CYCGRG	1 cut(s)	460
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	208
Esp3I	CGTCTC	2 cut(s)	720, 734
FalI	AAGNNNNNCTT	2 cut(s)	633, 665
FaqI	GGGAC	1 cut(s)	380
FbaI	TGATCA	1 cut(s)	78
Fnu4HI	GCNGC	6 cut(s)	47, 123, 287, 290, 324, 327
FokI	GGATG	1 cut(s)	521
Fsp4HI	GCNGC	6 cut(s)	47, 123, 287, 290, 324, 327
FspBI	CTAG	3 cut(s)	719, 794, 799
GlaI	GCGC	1 cut(s)	541
GluI	GCNGC	6 cut(s)	47, 123, 287, 290, 324, 327
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	3 cut(s)	29, 209, 224
HapII	CCGG	3 cut(s)	225, 308, 399
HhaI	GCGC	1 cut(s)	542
Hin1I	GRCGYC	1 cut(s)	790
Hin6I	GCGC	1 cut(s)	540
HinP1I	GCGC	1 cut(s)	540
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HindIII	AAGCTT	1 cut(s)	761
HinfI	GANTC	2 cut(s)	41, 52
HpaII	CCGG	3 cut(s)	225, 308, 399
HphI	GGTGA	3 cut(s)	76, 413, 610
Hpy166II	GTNNAC	1 cut(s)	573
Hpy188I	TCNGA	1 cut(s)	561
Hpy188III	TCNNGA	6 cut(s)	56, 115, 440, 460, 518, 545
Hpy8I	GTNNAC	1 cut(s)	573
HpyAV	CCTTC	6 cut(s)	136, 183, 221, 288, 548, 589
HpyCH4V	TGCA	3 cut(s)	316, 326, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	539, 654
HpyF3I	CTNAG	6 cut(s)	50, 219, 300, 492, 543, 785
Hsp92I	GRCGYC	1 cut(s)	790
HspAI	GCGC	1 cut(s)	540
Ksp22I	TGATCA	1 cut(s)	78
Kzo9I	GATC	7 cut(s)	78, 111, 237, 436, 468, 627, 709
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	5 cut(s)	58, 134, 273, 310, 338
LweI	GCATC	2 cut(s)	325, 499
MaeI	CTAG	3 cut(s)	719, 794, 799
MalI	GATC	7 cut(s)	80, 113, 239, 438, 470, 629, 711
MboI	GATC	7 cut(s)	78, 111, 237, 436, 468, 627, 709
MboII	GAAGA	8 cut(s)	101, 159, 361, 371, 602, 613, 616, 628
MflI	RGATCY	1 cut(s)	468
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	5 cut(s)	158, 333, 374, 500, 566
MlyI	GAGTC	2 cut(s)	50, 61
MseI	TTAA	2 cut(s)	336, 342
MslI	CAYNNNNRTG	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	49
MspI	CCGG	3 cut(s)	225, 308, 399
MspR9I	CCNGG	1 cut(s)	399
MvnI	CGCG	1 cut(s)	540
MwoI	GCNNNNNNNGC	2 cut(s)	539, 654
NciI	CCSGG	1 cut(s)	399
NdeII	GATC	7 cut(s)	78, 111, 237, 436, 468, 627, 709
NlaIV	GGNNCC	2 cut(s)	202, 470
NmeAIII	GCCGAG	1 cut(s)	5
OliI	CACNNNNGTG	1 cut(s)	98
PaeR7I	CTCGAG	1 cut(s)	460
PinAI	ACCGGT	1 cut(s)	307
PkrI	GCNGC	6 cut(s)	48, 124, 288, 291, 325, 328
PleI	GAGTC	2 cut(s)	49, 60
PpsI	GAGTC	2 cut(s)	49, 60
PshBI	ATTAAT	1 cut(s)	336
PspN4I	GGNNCC	2 cut(s)	202, 470
PspPI	GGNCC	1 cut(s)	208
PstI	CTGCAG	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	468
PvuII	CAGCTG	1 cut(s)	49
RsaI	GTAC	1 cut(s)	779
RsaNI	GTAC	1 cut(s)	778
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	336, 342
SatI	GCNGC	6 cut(s)	47, 123, 287, 290, 324, 327
Sau3AI	GATC	7 cut(s)	78, 111, 237, 436, 468, 627, 709
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	2 cut(s)	50, 61
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	203
SfaNI	GCATC	2 cut(s)	325, 499
SfcI	CTRYAG	1 cut(s)	324
Sfr274I	CTCGAG	1 cut(s)	460
SlaI	CTCGAG	1 cut(s)	460
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	3 cut(s)	440, 460, 516
SmoI	CTYRAG	3 cut(s)	440, 460, 516
Sse9I	AATT	5 cut(s)	158, 333, 374, 500, 566
SsiI	CCGC	2 cut(s)	154, 290
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	3 cut(s)	719, 794, 799
StyD4I	CCNGG	1 cut(s)	397
TaqI	TCGA	3 cut(s)	114, 461, 774
TasI	AATT	5 cut(s)	158, 333, 374, 500, 566
TauI	GCSGC	1 cut(s)	292
Tru1I	TTAA	2 cut(s)	336, 342
Tru9I	TTAA	2 cut(s)	336, 342
TscAI	CASTG	1 cut(s)	630
TseI	GCWGC	5 cut(s)	46, 122, 286, 323, 326
TspDTI	ATGAA	3 cut(s)	153, 432, 578
TspGWI	ACGGA	1 cut(s)	702
TspRI	CASTG	1 cut(s)	630
VspI	ATTAAT	1 cut(s)	336
XagI	CCTNNNNNAGG	1 cut(s)	194
XapI	RAATTY	2 cut(s)	158, 500
XhoI	CTCGAG	1 cut(s)	460
XspI	CTAG	3 cut(s)	719, 794, 799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.