Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0010296

Physical Location & Seq

Genomic Coordinates Reverse (-)

4470261 .. 4472157

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1057400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCAGCGGATGCGAACTCCAAGAGCGATACTTTGACGCTTGAGAAAGTGAGAGAGGCGTTGATTAAACAAGAAGATGCCATAATTTACCGGCTGATTCAGAGAGCAAACTTCCCTTTGAATTCTCCGGCGTACGACGAGAAAACGTTTCCATCGTTTTCTGGTTCTCTGCTTCAATTCTTTGTTAAGGAAACCGAAGCCCTCCAATCCAAGGTTGGTAGGTATGAAAATCCCGAAGAACTTCCGTTTTCCCCGGAAAGTTTACCGCCTTCATTGCTGCCGCCACCGGAAAATCCACCGGTATTGCATCCTGCTGCAGCTTCGATCAACATAAACGGAAAGATATGGGATTTCTATTTCGACGAATTGCTTCCTCTGTTTGCAGCCCCCGGTGACGATGGAAGCTATGCGTCAACTGCTTCTAATGATCTTGATTGCTTGCAGGCCATCTCTAAACGGATTCATTACGGATATTATGTTGCCGAGGTTAAGTTTAAGGATTCCCCTCAAGACTACGAGCCTGCAATTCGCGCTCAGGATAGGGAGGGTCTGATGAAATTGTTGACTTTTGTGGACGTAGAAGAGAAGGTGAAGAAAAGAGTTGAGAAGAAGGCAATGGTGTTTGGGCAAGAAGTGAGCCTGGTTGACAATGCCAACACTAAAATTGACCAACACAATGTAAGTGAACCATACAAGGTTGATCCGTTGATAGTTTCTCGCCTCTACGGAGAATGGATAATGCCGCTCACAAAGCTTGTTCAGGTTGAGTATCTCCTTCGCCGACTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

29.8

Weight (kDa)

4.97

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	137 - 254	8.1e-07	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10870
fragaria_vesca	FvH4_2g41100
malus_domestica	MD08G1057400.v1.1 MD15G1040000.v1.1
prunus_persica	Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1
pyrus_communis	pycom08g04690 pycom15g03750
rosa_chinensis	RchiOBHm_Chr6g0299441
rosa_laevigata	RLG00000011431
rosa_multiflora	Rmu_sc0017526.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168680
rosa_rugosa	Rorug06G0288200 Rorug06G0288300
rosa_samantha	Rh6AG400100 Rh6BG408700 Rh6CG414200 Rh6DG401200
rosa_wichuraiana	Rw6G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	745
AccII	CGCG	1 cut(s)	531
AciI	CCGC	4 cut(s)	8, 266, 281, 743
AclI	AACGTT	1 cut(s)	146
AclWI	GGATC	1 cut(s)	695
AcsI	RAATTY	1 cut(s)	121
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgeI	ACCGGT	1 cut(s)	298
AgsI	TTSAA	2 cut(s)	121, 176
AjnI	CCWGG	1 cut(s)	639
AluBI	AGCT	3 cut(s)	320, 405, 754
AluI	AGCT	3 cut(s)	320, 405, 754
AlwI	GGATC	1 cut(s)	695
AoxI	GGCC	1 cut(s)	444
ApeKI	GCWGC	5 cut(s)	5, 277, 314, 317, 383
ApoI	RAATTY	1 cut(s)	121
AsiGI	ACCGGT	1 cut(s)	298
Asp700I	GAANNNNTTC	2 cut(s)	240, 369
AspLEI	GCGC	1 cut(s)	533
AsuC2I	CCSGG	2 cut(s)	254, 390
AsuHPI	GGTGA	2 cut(s)	404, 601
BbvI	GCAGC	5 cut(s)	17, 264, 301, 329, 395
BccI	CCATC	3 cut(s)	160, 392, 455
BciT130I	CCWGG	1 cut(s)	641
BcnI	CCSGG	2 cut(s)	254, 390
BfaI	CTAG	1 cut(s)	790
BfmI	CTRYAG	1 cut(s)	315
BisI	GCNGC	7 cut(s)	6, 278, 281, 315, 318, 384, 743
BlsI	GCNGC	7 cut(s)	7, 279, 282, 316, 319, 385, 744
Bme1390I	CCNGG	3 cut(s)	254, 390, 641
BmrFI	CCNGG	3 cut(s)	254, 390, 641
BmsI	GCATC	2 cut(s)	67, 316
Bpu10I	CCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	2 cut(s)	62, 492
BpuMI	CCSGG	2 cut(s)	254, 390
BsaJI	CCNNGG	4 cut(s)	210, 252, 388, 483
BsaWI	WCCGGW	2 cut(s)	286, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse118I	RCCGGY	2 cut(s)	90, 298
Bse3DI	GCAATG	2 cut(s)	272, 621
BseBI	CCWGG	1 cut(s)	641
BseDI	CCNNGG	4 cut(s)	210, 252, 388, 483
BseGI	GGATG	2 cut(s)	16, 307
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMI	GCAATG	2 cut(s)	272, 621
BseMII	CTCAG	1 cut(s)	548
BseXI	GCAGC	5 cut(s)	17, 264, 301, 329, 395
Bsh1236I	CGCG	1 cut(s)	531
BshFI	GGCC	1 cut(s)	446
BshTI	ACCGGT	1 cut(s)	298
BsiSI	CCGG	6 cut(s)	91, 128, 254, 287, 299, 390
BsiWI	CGTACG	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	211
BsnI	GGCC	1 cut(s)	446
Bsp143I	GATC	3 cut(s)	324, 427, 700
BspACI	CCGC	4 cut(s)	8, 266, 281, 743
BspANI	GGCC	1 cut(s)	446
BspCNI	CTCAG	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	531
BspMAI	CTGCAG	1 cut(s)	319
BspPI	GGATC	1 cut(s)	695
BsrBI	CCGCTC	1 cut(s)	745
BsrDI	GCAATG	2 cut(s)	272, 621
BsrFI	RCCGGY	2 cut(s)	90, 298
BssAI	RCCGGY	2 cut(s)	90, 298
BssECI	CCNNGG	4 cut(s)	210, 252, 388, 483
BssMI	GATC	3 cut(s)	324, 427, 700
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	641
Bst6I	CTCTTC	1 cut(s)	576
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	3 cut(s)	440, 444, 522
BstDEI	CTNAG	1 cut(s)	534
BstF5I	GGATG	2 cut(s)	16, 307
BstFNI	CGCG	1 cut(s)	531
BstHHI	GCGC	1 cut(s)	533
BstKTI	GATC	3 cut(s)	327, 430, 703
BstMBI	GATC	3 cut(s)	324, 427, 700
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 274, 416, 530, 751
BstNI	CCWGG	1 cut(s)	641
BstSCI	CCNGG	3 cut(s)	252, 388, 639
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	5 cut(s)	17, 264, 301, 329, 395
BsuRI	GGCC	1 cut(s)	446
BtsCI	GGATG	2 cut(s)	16, 307
Cac8I	GCNNGC	3 cut(s)	440, 444, 522
CfoI	GCGC	1 cut(s)	533
Cfr10I	RCCGGY	2 cut(s)	90, 298
CseI	GACGC	2 cut(s)	46, 399
Csp6I	GTAC	1 cut(s)	133
CspAI	ACCGGT	1 cut(s)	298
CspCI	CAANNNNNGTGG	2 cut(s)	285, 320
CviJI	RGCY	9 cut(s)	94, 200, 320, 386, 405, 446, 520, 639, 754
CviKI_1	RGCY	9 cut(s)	94, 200, 320, 386, 405, 446, 520, 639, 754
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	534
DpnI	GATC	3 cut(s)	326, 429, 702
DpnII	GATC	3 cut(s)	324, 427, 700
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Eco130I	CCWWGG	1 cut(s)	210
EcoRI	GAATTC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	639
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaiI	YATR	7 cut(s)	83, 225, 332, 346, 408, 477, 691
Fnu4HI	GCNGC	7 cut(s)	6, 278, 281, 315, 318, 384, 743
FokI	GGATG	2 cut(s)	23, 294
Fsp4HI	GCNGC	7 cut(s)	6, 278, 281, 315, 318, 384, 743
FspBI	CTAG	1 cut(s)	790
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	7 cut(s)	6, 278, 281, 315, 318, 384, 743
HaeIII	GGCC	1 cut(s)	446
HapII	CCGG	6 cut(s)	91, 128, 254, 287, 299, 390
HgaI	GACGC	2 cut(s)	46, 399
HhaI	GCGC	1 cut(s)	533
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HincII	GTYRAC	3 cut(s)	414, 564, 646
HindII	GTYRAC	3 cut(s)	414, 564, 646
HindIII	AAGCTT	1 cut(s)	752
HinfI	GANTC	3 cut(s)	97, 460, 500
HpaII	CCGG	6 cut(s)	91, 128, 254, 287, 299, 390
HphI	GGTGA	2 cut(s)	404, 601
Hpy166II	GTNNAC	6 cut(s)	263, 414, 564, 574, 646, 686
Hpy188I	TCNGA	2 cut(s)	102, 552
Hpy188III	TCNNGA	4 cut(s)	233, 431, 509, 536
Hpy8I	GTNNAC	6 cut(s)	263, 414, 564, 574, 646, 686
Hpy99I	CGWCG	2 cut(s)	140, 365
HpyAV	CCTTC	4 cut(s)	279, 580, 604, 785
HpyCH4IV	ACGT	2 cut(s)	146, 576
HpyCH4V	TGCA	5 cut(s)	307, 317, 383, 442, 524
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 274, 416, 530, 751
HpyF3I	CTNAG	1 cut(s)	534
HpySE526I	ACGT	2 cut(s)	146, 576
HspAI	GCGC	1 cut(s)	531
Kzo9I	GATC	3 cut(s)	324, 427, 700
Lsp1109I	GCAGC	5 cut(s)	17, 264, 301, 329, 395
LweI	GCATC	2 cut(s)	67, 316
MaeI	CTAG	1 cut(s)	790
MaeII	ACGT	2 cut(s)	146, 576
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	3 cut(s)	326, 429, 702
MbiI	CCGCTC	1 cut(s)	745
MboI	GATC	3 cut(s)	324, 427, 700
MboII	GAAGA	5 cut(s)	86, 248, 593, 604, 619
MluCI	AATT	7 cut(s)	84, 121, 176, 365, 525, 557, 663
MnlI	CCTC	7 cut(s)	49, 212, 384, 478, 516, 538, 731
MroXI	GAANNNNTTC	2 cut(s)	240, 369
MseI	TTAA	4 cut(s)	66, 186, 489, 495
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	6 cut(s)	91, 128, 254, 287, 299, 390
MspR9I	CCNGG	3 cut(s)	254, 390, 641
MvaI	CCWGG	1 cut(s)	641
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	5 cut(s)	11, 274, 416, 530, 751
NciI	CCSGG	2 cut(s)	254, 390
NdeII	GATC	3 cut(s)	324, 427, 700
NmeAIII	GCCGAG	1 cut(s)	508
NmuCI	GTSAC	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	152
PdmI	GAANNNNTTC	2 cut(s)	240, 369
PfeI	GAWTC	3 cut(s)	97, 460, 500
Pfl23II	CGTACG	1 cut(s)	132
PinAI	ACCGGT	1 cut(s)	298
PkrI	GCNGC	7 cut(s)	7, 279, 282, 316, 319, 385, 744
Psp1406I	AACGTT	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	639
PspGI	CCWGG	1 cut(s)	639
PspLI	CGTACG	1 cut(s)	132
PstI	CTGCAG	1 cut(s)	319
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SaqAI	TTAA	4 cut(s)	66, 186, 489, 495
SatI	GCNGC	7 cut(s)	6, 278, 281, 315, 318, 384, 743
Sau3AI	GATC	3 cut(s)	324, 427, 700
ScrFI	CCNGG	3 cut(s)	254, 390, 641
SfaNI	GCATC	2 cut(s)	67, 316
SfcI	CTRYAG	1 cut(s)	315
SmlI	CTYRAG	2 cut(s)	41, 507
SmoI	CTYRAG	2 cut(s)	41, 507
Sse9I	AATT	7 cut(s)	84, 121, 176, 365, 525, 557, 663
SsiI	CCGC	4 cut(s)	8, 266, 281, 743
SspMI	CTAG	1 cut(s)	790
StyD4I	CCNGG	3 cut(s)	252, 388, 639
StyI	CCWWGG	1 cut(s)	210
TaiI	ACGT	2 cut(s)	149, 579
TaqI	TCGA	2 cut(s)	323, 360
TasI	AATT	7 cut(s)	84, 121, 176, 365, 525, 557, 663
TauI	GCSGC	2 cut(s)	283, 745
TfiI	GAWTC	3 cut(s)	97, 460, 500
Tru1I	TTAA	4 cut(s)	66, 186, 489, 495
Tru9I	TTAA	4 cut(s)	66, 186, 489, 495
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	5 cut(s)	5, 277, 314, 317, 383
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	4 cut(s)	240, 261, 452, 569
TspGWI	ACGGA	6 cut(s)	234, 351, 472, 483, 693, 741
XapI	RAATTY	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XmnI	GAANNNNTTC	2 cut(s)	240, 369
XspI	CTAG	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.