Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010296

Physical Location & Seq

Genomic Coordinates Forward (+)

2827870 .. 2830251

Gene Structure 2382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1040000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCCGCTGAATCGAACTCCAAGAGTGATATTTTGACGCTCGAGAAAGTGAGAGAGGCATTGATTAAACAAGAAGACACCATAATTTCCCGGCTGATTCAGAGAGCAAACTTCCCTTTGAATTCTCCGGCGTACGACGAAGGAAAGTTTCCATCTTTTCCTGGTTCTCTCCTTCAATTCGTTGTCAAGGAGACAGAAGCCCTCCAATCCAAGGTTGGTCGGTATGAAAATCCAGAAGAACATCCGTTTTTCCCGAAAAGTTTACCCCTTTCGTTGCTACCGCCTCCGGCAAATCCACCGGTATTGCATCCTGCTGCAGGTTCGATTAACATAAACGAAAAGATTTGGGAGTTCTATTTCGACGAATTGCTTCCTCTGTTTGCTGCCCCCGGCGACGATGGAAGCTATGCATCAGCTGCTTCTAGTGATCTTGACTGCTTACAGGCCATCTCTAGACGGATTCATTACGGATACTATGTAGCCGAGGTTAAATTCAAGGGTTCCCCTCAAGACTACGAACCAGCAATTCGCGATCAGGATAGGGACGGTTTGATGAAATTGTTGACATTTGTGGATGTGGAAGAGATGGTGAAGAAACGAGTTGCGAAGAAGGCAAAGGTGTTAGGGCAAGAAGTAAGCCTAGTTGACAATGCCAATGCTAAAACCGACAAACACAACGCAAGTGAAAAATACAAGGTTGATCCGTCGGTAGTTTCTCGCCTCTACGAAGAATGGATAATGCCGCTCACGAAGCTTGTTCAAGTTGAGTATCTCCTTCGCCGCCTAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

29.67

Weight (kDa)

5.43

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	138 - 254	2.6e-08	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10870
fragaria_vesca	FvH4_2g41100
malus_domestica	MD08G1057400.v1.1 MD15G1040000.v1.1
prunus_persica	Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1
pyrus_communis	pycom08g04690 pycom15g03750
rosa_chinensis	RchiOBHm_Chr6g0299441
rosa_laevigata	RLG00000011431
rosa_multiflora	Rmu_sc0017526.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168680
rosa_rugosa	Rorug06G0288200 Rorug06G0288300
rosa_samantha	Rh6AG400100 Rh6BG408700 Rh6CG414200 Rh6DG401200
rosa_wichuraiana	Rw6G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	308
AccBSI	CCGCTC	1 cut(s)	745
AccII	CGCG	1 cut(s)	531
AciI	CCGC	4 cut(s)	6, 281, 743, 781
AclWI	GGATC	1 cut(s)	695
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	121, 491
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	211, 317
AgeI	ACCGGT	1 cut(s)	298
AgsI	TTSAA	4 cut(s)	121, 176, 496, 761
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	3 cut(s)	405, 416, 754
AluI	AGCT	3 cut(s)	405, 416, 754
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	1 cut(s)	695
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	2 cut(s)	3, 444
ApeKI	GCWGC	3 cut(s)	314, 383, 416
ApoI	RAATTY	2 cut(s)	121, 491
AsiGI	ACCGGT	1 cut(s)	298
Asp700I	GAANNNNTTC	1 cut(s)	369
AsuC2I	CCSGG	2 cut(s)	91, 390
AsuHPI	GGTGA	1 cut(s)	601
AvaI	CYCGRG	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	3 cut(s)	301, 370, 403
BccI	CCATC	4 cut(s)	160, 392, 455, 580
BciT130I	CCWGG	1 cut(s)	162
BciVI	GTATCC	1 cut(s)	464
BcnI	CCSGG	2 cut(s)	91, 390
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	5 cut(s)	423, 453, 641, 785, 790
BfmI	CTRYAG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	308
BfuI	GTATCC	1 cut(s)	464
BisI	GCNGC	6 cut(s)	6, 315, 384, 417, 743, 781
BlsI	GCNGC	6 cut(s)	7, 316, 385, 418, 744, 782
Bme1390I	CCNGG	3 cut(s)	91, 162, 390
BmeT110I	CYCGRG	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	502
BmrFI	CCNGG	3 cut(s)	91, 162, 390
BmsI	GCATC	2 cut(s)	316, 419
BpiI	GAAGAC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	492
BpuMI	CCSGG	2 cut(s)	91, 390
BsaJI	CCNNGG	3 cut(s)	210, 388, 483
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 317
Bse118I	RCCGGY	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	3 cut(s)	210, 388, 483
BseGI	GGATG	3 cut(s)	241, 307, 580
BseLI	CCNNNNNNNGG	2 cut(s)	211, 317
BseXI	GCAGC	3 cut(s)	301, 370, 403
Bsh1236I	CGCG	1 cut(s)	531
BshFI	GGCC	2 cut(s)	5, 446
BshTI	ACCGGT	1 cut(s)	298
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	5 cut(s)	91, 128, 287, 299, 390
BsiWI	CGTACG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	2 cut(s)	211, 317
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	557
BsnI	GGCC	2 cut(s)	5, 446
BsoBI	CYCGRG	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	427, 532, 700
Bsp68I	TCGCGA	1 cut(s)	531
BspACI	CCGC	4 cut(s)	6, 281, 743, 781
BspANI	GGCC	2 cut(s)	5, 446
BspFNI	CGCG	1 cut(s)	531
BspLI	GGNNCC	1 cut(s)	502
BspMAI	CTGCAG	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	695
BsrBI	CCGCTC	1 cut(s)	745
BsrFI	RCCGGY	1 cut(s)	298
BssAI	RCCGGY	1 cut(s)	298
BssECI	CCNNGG	3 cut(s)	210, 388, 483
BssMI	GATC	3 cut(s)	427, 532, 700
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	548
Bst6I	CTCTTC	1 cut(s)	576
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstENI	CCTNNNNNAGG	1 cut(s)	315
BstF5I	GGATG	3 cut(s)	241, 307, 580
BstFNI	CGCG	1 cut(s)	531
BstKTI	GATC	3 cut(s)	430, 535, 703
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	3 cut(s)	427, 532, 700
BstMWI	GCNNNNNNNGC	3 cut(s)	416, 611, 751
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	3 cut(s)	89, 160, 388
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	3 cut(s)	301, 370, 403
BstV2I	GAAGAC	1 cut(s)	81
BsuI	GTATCC	1 cut(s)	464
BsuRI	GGCC	2 cut(s)	5, 446
BtsCI	GGATG	3 cut(s)	241, 307, 580
BtuMI	TCGCGA	1 cut(s)	531
BveI	ACCTGC	1 cut(s)	308
Cfr10I	RCCGGY	1 cut(s)	298
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	133
CspAI	ACCGGT	1 cut(s)	298
CspCI	CAANNNNNGTGG	2 cut(s)	285, 320
CviJI	RGCY	9 cut(s)	5, 94, 200, 405, 416, 446, 482, 639, 754
CviKI_1	RGCY	9 cut(s)	5, 94, 200, 405, 416, 446, 482, 639, 754
CviQI	GTAC	1 cut(s)	133
DpnI	GATC	3 cut(s)	429, 534, 702
DpnII	GATC	3 cut(s)	427, 532, 700
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Eco130I	CCWWGG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	41
EcoNI	CCTNNNNNAGG	1 cut(s)	315
EcoRI	GAATTC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	210
FaiI	YATR	5 cut(s)	83, 225, 332, 408, 477
FaqI	GGGAC	1 cut(s)	557
Fnu4HI	GCNGC	6 cut(s)	6, 315, 384, 417, 743, 781
FokI	GGATG	3 cut(s)	228, 294, 587
Fsp4HI	GCNGC	6 cut(s)	6, 315, 384, 417, 743, 781
FspBI	CTAG	5 cut(s)	423, 453, 641, 785, 790
GluI	GCNGC	6 cut(s)	6, 315, 384, 417, 743, 781
HaeIII	GGCC	2 cut(s)	5, 446
HapII	CCGG	5 cut(s)	91, 128, 287, 299, 390
HgaI	GACGC	1 cut(s)	46
HincII	GTYRAC	2 cut(s)	564, 646
HindII	GTYRAC	2 cut(s)	564, 646
HindIII	AAGCTT	1 cut(s)	752
HinfI	GANTC	3 cut(s)	11, 97, 460
HpaII	CCGG	5 cut(s)	91, 128, 287, 299, 390
HphI	GGTGA	1 cut(s)	601
Hpy166II	GTNNAC	3 cut(s)	263, 564, 646
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	9 cut(s)	43, 233, 253, 431, 453, 509, 530, 536, 748
Hpy8I	GTNNAC	3 cut(s)	263, 564, 646
Hpy99I	CGWCG	4 cut(s)	140, 365, 398, 709
HpyAV	CCTTC	4 cut(s)	134, 182, 604, 785
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4V	TGCA	3 cut(s)	307, 317, 410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	416, 611, 751
Kzo9I	GATC	3 cut(s)	427, 532, 700
Lsp1109I	GCAGC	3 cut(s)	301, 370, 403
LweI	GCATC	2 cut(s)	316, 419
MaeI	CTAG	5 cut(s)	423, 453, 641, 785, 790
MalI	GATC	3 cut(s)	429, 534, 702
MbiI	CCGCTC	1 cut(s)	745
MboI	GATC	3 cut(s)	427, 532, 700
MboII	GAAGA	6 cut(s)	86, 248, 593, 604, 619, 740
MluCI	AATT	7 cut(s)	84, 121, 176, 365, 491, 525, 557
MnlI	CCTC	7 cut(s)	49, 212, 294, 384, 478, 516, 731
Mph1103I	ATGCAT	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	3 cut(s)	66, 327, 489
MspA1I	CMGCKG	2 cut(s)	8, 416
MspI	CCGG	5 cut(s)	91, 128, 287, 299, 390
MspR9I	CCNGG	3 cut(s)	91, 162, 390
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	3 cut(s)	416, 611, 751
NciI	CCSGG	2 cut(s)	91, 390
NdeII	GATC	3 cut(s)	427, 532, 700
NlaIV	GGNNCC	1 cut(s)	502
NmeAIII	GCCGAG	1 cut(s)	508
NruI	TCGCGA	1 cut(s)	531
NsiI	ATGCAT	1 cut(s)	412
PaeR7I	CTCGAG	1 cut(s)	41
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	11, 97, 460
Pfl23II	CGTACG	1 cut(s)	132
PinAI	ACCGGT	1 cut(s)	298
PkrI	GCNGC	6 cut(s)	7, 316, 385, 418, 744, 782
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspLI	CGTACG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	502
PstI	CTGCAG	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	416
RruI	TCGCGA	1 cut(s)	531
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SaqAI	TTAA	3 cut(s)	66, 327, 489
SatI	GCNGC	6 cut(s)	6, 315, 384, 417, 743, 781
Sau3AI	GATC	3 cut(s)	427, 532, 700
ScrFI	CCNGG	3 cut(s)	91, 162, 390
SetI	ASST	8 cut(s)	216, 322, 407, 418, 489, 621, 699, 756
SfaNI	GCATC	2 cut(s)	316, 419
SfcI	CTRYAG	1 cut(s)	315
Sfr274I	CTCGAG	1 cut(s)	41
SlaI	CTCGAG	1 cut(s)	41
SmlI	CTYRAG	2 cut(s)	41, 507
SmoI	CTYRAG	2 cut(s)	41, 507
Sse9I	AATT	7 cut(s)	84, 121, 176, 365, 491, 525, 557
SsiI	CCGC	4 cut(s)	6, 281, 743, 781
SspMI	CTAG	5 cut(s)	423, 453, 641, 785, 790
StyD4I	CCNGG	3 cut(s)	89, 160, 388
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	548
TaqI	TCGA	4 cut(s)	14, 42, 323, 360
TasI	AATT	7 cut(s)	84, 121, 176, 365, 491, 525, 557
TauI	GCSGC	3 cut(s)	8, 745, 783
TfiI	GAWTC	3 cut(s)	11, 97, 460
Tru1I	TTAA	3 cut(s)	66, 327, 489
Tru9I	TTAA	3 cut(s)	66, 327, 489
TseI	GCWGC	3 cut(s)	314, 383, 416
TspDTI	ATGAA	3 cut(s)	240, 452, 569
TspGWI	ACGGA	4 cut(s)	234, 472, 483, 693
XagI	CCTNNNNNAGG	1 cut(s)	315
XapI	RAATTY	2 cut(s)	121, 491
XbaI	TCTAGA	1 cut(s)	452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XhoI	CTCGAG	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	5 cut(s)	423, 453, 641, 785, 790
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.