Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010296

Physical Location & Seq

Genomic Coordinates Forward (+)

9413367 .. 9414936

Gene Structure 1570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011431

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGGGGTTTGAGACTTGTTCATCTTTTTCTGGTTCTTGTTTTAACATCTAGCAGTAGCAGTTGCAGTTGCAGTTGCAGCAGACCCATTATTAACATGGCAGAAGCACCAAAACCCAACTCGGCGAGCAAGAATGAGCCGCTGACGCTTGGGAAGGTGAGGCAGGCATTGATCAGCCAAGAAGACACCATCGTGTTTAGGCTAATTGAGAGAGCCGCCTTCCCTCTCAACTCTCCTACCTACCACCACAAAATTTCGTCTTCACCTTCTTTGTTTAACTTCGTTGTCAAGAGCACTGAGGCCCTTCAATCTCAGGCCGGTAGATATGAAATCCCTGAAGAACTGCCTTTTTTCCCAGAAAACTTACCACCTTCATTGCTGCCGCCTCCTGCTGATCCACCGGTATTGCATCCTGCTGCAGCTTCCATTAATCTTAACAAAAAGATATTGGATATATATTTGAAACAATTGCTTCCTCTGTTTGCTGCCCCGGGTGATGATGGAAACTACGCAGCAACTGCCTCCAGTGATCTTGATTGTTTACAGGCAATCTCTAGAAGGATTCATTATGGATACTATGTTGCTGAGGTCAAATTCAGGGACGCCCCTCAAGATTATGAGCCTGCAATTCGCGCTCAGGACAGAGAAGGTCTCATGAAATTGTTGACATTTACGAATGTGGAAGAGCAGGTGAAGAAGAGAGTTGAGAAGAAAGCAGTGATCTTTGGGCAGGAAGTGAGCCTTGACAACAACACTAACAGTGTAAAACAAAATGGAACTGTAAATGGAAAACAAAAGGTTGATCCGTCTCTAGTTTCTCGTCTCTATGCAGAATGGGTAATGCCTCTCACAAAGGATGTTCAAGTTGAGTACCTCCTTAGACGCCTAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

298

Amino Acids

33.01

Weight (kDa)

7.66

Isoelectric Point (pI)

62.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	171 - 288	7.8e-08	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10870
fragaria_vesca	FvH4_2g41100
malus_domestica	MD08G1057400.v1.1 MD15G1040000.v1.1
prunus_persica	Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1
pyrus_communis	pycom08g04690 pycom15g03750
rosa_chinensis	RchiOBHm_Chr6g0299441
rosa_laevigata	RLG00000011431
rosa_multiflora	Rmu_sc0017526.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168680
rosa_rugosa	Rorug06G0288200 Rorug06G0288300
rosa_samantha	Rh6AG400100 Rh6BG408700 Rh6CG414200 Rh6DG401200
rosa_wichuraiana	Rw6G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	679
Acc36I	ACCTGC	1 cut(s)	679
AccII	CGCG	1 cut(s)	633
AciI	CCGC	3 cut(s)	140, 216, 383
AclWI	GGATC	2 cut(s)	389, 797
AcsI	RAATTY	2 cut(s)	252, 593
AcuI	CTGAAG	1 cut(s)	357
AcyI	GRCGYC	2 cut(s)	603, 883
AfaI	GTAC	1 cut(s)	872
AgeI	ACCGGT	1 cut(s)	400
AgsI	TTSAA	3 cut(s)	308, 463, 863
AleI	CACNNNNGTG	1 cut(s)	191
AluBI	AGCT	1 cut(s)	422
AluI	AGCT	1 cut(s)	422
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	4 cut(s)	7, 656, 813, 827
AlwI	GGATC	2 cut(s)	389, 797
AlwNI	CAGNNNCTG	1 cut(s)	518
Ama87I	CYCGRG	1 cut(s)	490
AoxI	GGCC	2 cut(s)	300, 315
ApeKI	GCWGC	6 cut(s)	78, 379, 416, 419, 485, 512
ApoI	RAATTY	2 cut(s)	252, 593
AseI	ATTAAT	1 cut(s)	429
AsiGI	ACCGGT	1 cut(s)	400
AspLEI	GCGC	1 cut(s)	635
AspS9I	GGNCC	1 cut(s)	301
AsuC2I	CCSGG	2 cut(s)	491, 492
AsuHPI	GGTGA	4 cut(s)	169, 255, 506, 703
AvaI	CYCGRG	1 cut(s)	490
BbsI	GAAGAC	2 cut(s)	189, 252
Bbv12I	GWGCWC	1 cut(s)	296
BbvCI	CCTCAGC	1 cut(s)	585
BbvI	GCAGC	6 cut(s)	90, 366, 403, 431, 472, 524
BccI	CCATC	2 cut(s)	197, 494
BciVI	GTATCC	1 cut(s)	566
BclI	TGATCA	1 cut(s)	171
BcnI	CCSGG	2 cut(s)	491, 492
BcoDI	GTCTC	4 cut(s)	7, 656, 813, 827
BfaI	CTAG	5 cut(s)	51, 555, 812, 887, 892
BfmI	CTRYAG	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	679
BfuI	GTATCC	1 cut(s)	566
BisI	GCNGC	9 cut(s)	79, 140, 216, 380, 383, 417, 420, 486, 513
BlsI	GCNGC	9 cut(s)	80, 141, 217, 381, 384, 418, 421, 487, 514
Bme1390I	CCNGG	2 cut(s)	491, 492
BmeT110I	CYCGRG	1 cut(s)	490
BmgT120I	GGNCC	1 cut(s)	301
BmrFI	CCNGG	2 cut(s)	491, 492
BmsI	GCATC	1 cut(s)	418
BpiI	GAAGAC	2 cut(s)	189, 252
BplI	GAGNNNNNCTC	2 cut(s)	636, 668
BpmI	CTGGAG	1 cut(s)	508
Bpu10I	CCTNAGC	2 cut(s)	585, 636
BpuEI	CTTGAG	1 cut(s)	594
BpuMI	CCSGG	2 cut(s)	491, 492
BsaHI	GRCGYC	2 cut(s)	603, 883
BsaI	GGTCTC	1 cut(s)	656
BsaJI	CCNNGG	2 cut(s)	489, 490
BsaWI	WCCGGW	1 cut(s)	400
Bse118I	RCCGGY	2 cut(s)	317, 400
Bse1I	ACTGG	1 cut(s)	525
Bse3DI	GCAATG	1 cut(s)	374
BseDI	CCNNGG	2 cut(s)	489, 490
BseGI	GGATG	2 cut(s)	409, 862
BseMI	GCAATG	1 cut(s)	374
BseMII	CTCAG	4 cut(s)	288, 326, 576, 650
BseNI	ACTGG	1 cut(s)	525
BseXI	GCAGC	6 cut(s)	90, 366, 403, 431, 472, 524
Bsh1236I	CGCG	1 cut(s)	633
BshFI	GGCC	2 cut(s)	302, 317
BshTI	ACCGGT	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	490
BsiSI	CCGG	3 cut(s)	318, 401, 491
BslFI	GGGAC	1 cut(s)	614
BsmAI	GTCTC	4 cut(s)	7, 656, 813, 827
BsmBI	CGTCTC	2 cut(s)	813, 827
BsmFI	GGGAC	1 cut(s)	614
BsnI	GGCC	2 cut(s)	302, 317
Bso31I	GGTCTC	1 cut(s)	656
BsoBI	CYCGRG	1 cut(s)	490
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	5 cut(s)	171, 394, 529, 720, 802
BspACI	CCGC	3 cut(s)	140, 216, 383
BspANI	GGCC	2 cut(s)	302, 317
BspCNI	CTCAG	4 cut(s)	289, 325, 577, 649
BspFNI	CGCG	1 cut(s)	633
BspHI	TCATGA	1 cut(s)	654
BspMAI	CTGCAG	1 cut(s)	421
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	2 cut(s)	389, 797
BspQI	GCTCTTC	1 cut(s)	678
BspTNI	GGTCTC	1 cut(s)	656
BsrDI	GCAATG	1 cut(s)	374
BsrFI	RCCGGY	2 cut(s)	317, 400
BsrI	ACTGG	1 cut(s)	525
BssAI	RCCGGY	2 cut(s)	317, 400
BssECI	CCNNGG	2 cut(s)	489, 490
BssMI	GATC	5 cut(s)	171, 394, 529, 720, 802
BssNI	GRCGYC	2 cut(s)	603, 883
Bst4CI	ACNGT	2 cut(s)	761, 781
Bst6I	CTCTTC	2 cut(s)	678, 692
BstACI	GRCGYC	2 cut(s)	603, 883
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstC8I	GCNNGC	3 cut(s)	127, 165, 624
BstDEI	CTNAG	5 cut(s)	297, 312, 585, 636, 878
BstF5I	GGATG	2 cut(s)	409, 862
BstFNI	CGCG	1 cut(s)	633
BstHHI	GCGC	1 cut(s)	635
BstKTI	GATC	5 cut(s)	174, 397, 532, 723, 805
BstMAI	GTCTC	4 cut(s)	7, 656, 813, 827
BstMBI	GATC	5 cut(s)	171, 394, 529, 720, 802
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 145, 518, 632
BstSCI	CCNGG	2 cut(s)	489, 490
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	6 cut(s)	90, 366, 403, 431, 472, 524
BstV2I	GAAGAC	2 cut(s)	189, 252
BsuI	GTATCC	1 cut(s)	566
BsuRI	GGCC	2 cut(s)	302, 317
BtsCI	GGATG	2 cut(s)	409, 862
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	4 cut(s)	294, 532, 723, 766
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	3 cut(s)	127, 165, 624
CaiI	CAGNNNCTG	1 cut(s)	518
CciI	TCATGA	1 cut(s)	654
CfoI	GCGC	1 cut(s)	635
Cfr10I	RCCGGY	2 cut(s)	317, 400
Cfr13I	GGNCC	1 cut(s)	301
Cfr9I	CCCGGG	1 cut(s)	490
CseI	GACGC	2 cut(s)	154, 611
Csp6I	GTAC	1 cut(s)	871
CspAI	ACCGGT	1 cut(s)	400
CspCI	CAANNNNNGTGG	4 cut(s)	357, 387, 392, 422
CviAII	CATG	2 cut(s)	97, 655
CviJI	RGCY	9 cut(s)	139, 177, 202, 215, 302, 317, 422, 622, 741
CviKI_1	RGCY	9 cut(s)	139, 177, 202, 215, 302, 317, 422, 622, 741
CviQI	GTAC	1 cut(s)	871
DdeI	CTNAG	5 cut(s)	297, 312, 585, 636, 878
DpnI	GATC	5 cut(s)	173, 396, 531, 722, 804
DpnII	GATC	5 cut(s)	171, 394, 529, 720, 802
Eam1104I	CTCTTC	2 cut(s)	678, 692
EarI	CTCTTC	2 cut(s)	678, 692
Eco31I	GGTCTC	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	490
EcoO109I	RGGNCCY	1 cut(s)	301
Esp3I	CGTCTC	2 cut(s)	813, 827
FaeI	CATG	2 cut(s)	100, 658
FaiI	YATR	9 cut(s)	98, 327, 455, 457, 570, 579, 618, 656, 828
FalI	AAGNNNNNCTT	2 cut(s)	726, 758
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	2 cut(s)	96, 654
FbaI	TGATCA	1 cut(s)	171
Fnu4HI	GCNGC	9 cut(s)	79, 140, 216, 380, 383, 417, 420, 486, 513
FokI	GGATG	2 cut(s)	396, 869
Fsp4HI	GCNGC	9 cut(s)	79, 140, 216, 380, 383, 417, 420, 486, 513
FspBI	CTAG	5 cut(s)	51, 555, 812, 887, 892
GlaI	GCGC	1 cut(s)	634
GluI	GCNGC	9 cut(s)	79, 140, 216, 380, 383, 417, 420, 486, 513
GsuI	CTGGAG	1 cut(s)	508
HaeIII	GGCC	2 cut(s)	302, 317
HapII	CCGG	3 cut(s)	318, 401, 491
HgaI	GACGC	2 cut(s)	154, 611
HhaI	GCGC	1 cut(s)	635
Hin1I	GRCGYC	2 cut(s)	603, 883
Hin1II	CATG	2 cut(s)	100, 658
Hin6I	GCGC	1 cut(s)	633
HinP1I	GCGC	1 cut(s)	633
HincII	GTYRAC	1 cut(s)	666
HindII	GTYRAC	1 cut(s)	666
HinfI	GANTC	1 cut(s)	562
HpaII	CCGG	3 cut(s)	318, 401, 491
HphI	GGTGA	4 cut(s)	169, 255, 506, 703
Hpy166II	GTNNAC	2 cut(s)	542, 666
Hpy188III	TCNNGA	6 cut(s)	289, 533, 555, 611, 638, 655
Hpy8I	GTNNAC	2 cut(s)	542, 666
HpyAV	CCTTC	7 cut(s)	148, 229, 276, 314, 381, 552, 641
HpyCH4III	ACNGT	2 cut(s)	761, 781
HpyCH4V	TGCA	7 cut(s)	66, 72, 78, 409, 419, 626, 830
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 145, 518, 632
HpyF3I	CTNAG	5 cut(s)	297, 312, 585, 636, 878
Hsp92I	GRCGYC	2 cut(s)	603, 883
Hsp92II	CATG	2 cut(s)	100, 658
HspAI	GCGC	1 cut(s)	633
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	5 cut(s)	171, 394, 529, 720, 802
LguI	GCTCTTC	1 cut(s)	678
Lsp1109I	GCAGC	6 cut(s)	90, 366, 403, 431, 472, 524
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	5 cut(s)	51, 555, 812, 887, 892
MalI	GATC	5 cut(s)	173, 396, 531, 722, 804
MboI	GATC	5 cut(s)	171, 394, 529, 720, 802
MboII	GAAGA	7 cut(s)	194, 252, 350, 695, 706, 709, 721
MfeI	CAATTG	1 cut(s)	467
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	6 cut(s)	204, 252, 467, 593, 627, 659
MseI	TTAA	5 cut(s)	44, 93, 276, 429, 435
MslI	CAYNNNNRTG	1 cut(s)	191
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	3 cut(s)	318, 401, 491
MspR9I	CCNGG	2 cut(s)	491, 492
MunI	CAATTG	1 cut(s)	467
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	4 cut(s)	78, 145, 518, 632
NciI	CCSGG	2 cut(s)	491, 492
NdeII	GATC	5 cut(s)	171, 394, 529, 720, 802
NlaIII	CATG	2 cut(s)	100, 658
NmeAIII	GCCGAG	1 cut(s)	101
OliI	CACNNNNGTG	1 cut(s)	191
PagI	TCATGA	1 cut(s)	654
PaqCI	CACCTGC	1 cut(s)	679
PciSI	GCTCTTC	1 cut(s)	678
PfeI	GAWTC	1 cut(s)	562
PinAI	ACCGGT	1 cut(s)	400
PkrI	GCNGC	9 cut(s)	80, 141, 217, 381, 384, 418, 421, 487, 514
PshBI	ATTAAT	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	301
PstI	CTGCAG	1 cut(s)	421
PstNI	CAGNNNCTG	1 cut(s)	518
RsaI	GTAC	1 cut(s)	872
RsaNI	GTAC	1 cut(s)	871
RseI	CAYNNNNRTG	1 cut(s)	191
SapI	GCTCTTC	1 cut(s)	678
SaqAI	TTAA	5 cut(s)	44, 93, 276, 429, 435
SatI	GCNGC	9 cut(s)	79, 140, 216, 380, 383, 417, 420, 486, 513
Sau3AI	GATC	5 cut(s)	171, 394, 529, 720, 802
Sau96I	GGNCC	1 cut(s)	301
ScrFI	CCNGG	2 cut(s)	491, 492
SduI	GDGCHC	1 cut(s)	296
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	417
SmaI	CCCGGG	1 cut(s)	492
SmiMI	CAYNNNNRTG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
Sse9I	AATT	6 cut(s)	204, 252, 467, 593, 627, 659
SsiI	CCGC	3 cut(s)	140, 216, 383
SspMI	CTAG	5 cut(s)	51, 555, 812, 887, 892
StyD4I	CCNGG	2 cut(s)	489, 490
TaaI	ACNGT	2 cut(s)	761, 781
TasI	AATT	6 cut(s)	204, 252, 467, 593, 627, 659
TauI	GCSGC	3 cut(s)	142, 218, 385
TfiI	GAWTC	1 cut(s)	562
Tru1I	TTAA	5 cut(s)	44, 93, 276, 429, 435
Tru9I	TTAA	5 cut(s)	44, 93, 276, 429, 435
TscAI	CASTG	4 cut(s)	301, 532, 723, 766
TseI	GCWGC	6 cut(s)	78, 379, 416, 419, 485, 512
TspDTI	ATGAA	5 cut(s)	11, 342, 363, 554, 671
TspGWI	ACGGA	1 cut(s)	795
TspMI	CCCGGG	1 cut(s)	490
TspRI	CASTG	4 cut(s)	301, 532, 723, 766
VspI	ATTAAT	1 cut(s)	429
XapI	RAATTY	2 cut(s)	252, 593
XbaI	TCTAGA	1 cut(s)	554
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XmaI	CCCGGG	1 cut(s)	490
XspI	CTAG	5 cut(s)	51, 555, 812, 887, 892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.