Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017526.1

Orthogroup ID

OG0010296

Physical Location & Seq

Genomic Coordinates Reverse (-)

36443 .. 38319

Gene Structure 1877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017526.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ctgcctgtttcacgttcaacgatctcagatacgccaattccaagttgcagcagacgcattcctaacatggcagaagcaccgaaacccaactcggcgagcaagaacgagtcgctgacgcttgagaaggtgagacaggcattgatcagccaagaagacaccatcgtgtttaggctgattgagagagccgccttccctctcaactctcctacctaccaccacaaaatttcgtcttcaccttctttgtttaacttcattgtcaagagcaccgaggcccttcaatctcaggccggtagatatgaaatccctgaagaactgccttttttcccagaaaacttaccaccttcattgctgccgcctcctgctgatcaaccggtattgcatcctgctgcagcttccattaatcttaacaaaaagatattggatatatatttgaaacaattacttcctctgtttgctgtccccggtatattggttgacatcacttatgctattggtttggttggtgacttggccccatcaaagtttcgttgtgcgcacggtgatgatggaaactatgcagcaactgcctccagtgatcttgattgtttacaggcaatctctagaaggattcattatggatactatgttgctgaggtcaaattcagggacgcccctcacgattatgagcctgcaattcgcgctcaggacagagaaggtctcatgaaattgttgacatttacgaatgtggaagagcaggtgaagaagagagttgagaagaaagcagtgatctttgggcaagaagtgagcctggacgagaacactaacagtgtaaaacaaaatggaactgtaaatggaaaatacaaggttgatccgtctctagtttctcgtctctatggagaatgggtaatgcctctcacaaaggatgttcaagttgagtacctccttagacgcctagactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

34.81

Weight (kDa)

6.68

Isoelectric Point (pI)

56.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10870
fragaria_vesca	FvH4_2g41100
malus_domestica	MD08G1057400.v1.1 MD15G1040000.v1.1
prunus_persica	Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1
pyrus_communis	pycom08g04690 pycom15g03750
rosa_chinensis	RchiOBHm_Chr6g0299441
rosa_laevigata	RLG00000011431
rosa_multiflora	Rmu_sc0017526.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168680
rosa_rugosa	Rorug06G0288200 Rorug06G0288300
rosa_samantha	Rh6AG400100 Rh6BG408700 Rh6CG414200 Rh6DG401200
rosa_wichuraiana	Rw6G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	724
Acc16I	TGCGCA	1 cut(s)	534
Acc36I	ACCTGC	1 cut(s)	724
AccII	CGCG	1 cut(s)	678
AciI	CCGC	2 cut(s)	186, 353
AclWI	GGATC	1 cut(s)	842
AcsI	RAATTY	2 cut(s)	222, 638
AcuI	CTGAAG	1 cut(s)	327
AcyI	GRCGYC	2 cut(s)	648, 928
AfaI	GTAC	1 cut(s)	917
AgeI	ACCGGT	1 cut(s)	370
AgsI	TTSAA	4 cut(s)	18, 278, 433, 908
AjnI	CCWGG	1 cut(s)	786
AleI	CACNNNNGTG	1 cut(s)	161
AluBI	AGCT	1 cut(s)	392
AluI	AGCT	1 cut(s)	392
Alw21I	GWGCWC	1 cut(s)	266
Alw26I	GTCTC	4 cut(s)	124, 701, 858, 872
AlwI	GGATC	1 cut(s)	842
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	3 cut(s)	270, 285, 510
ApeKI	GCWGC	5 cut(s)	48, 349, 386, 389, 557
ApoI	RAATTY	2 cut(s)	222, 638
AseI	ATTAAT	1 cut(s)	399
AsiGI	ACCGGT	1 cut(s)	370
AspLEI	GCGC	2 cut(s)	535, 680
AspS9I	GGNCC	2 cut(s)	271, 511
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	5 cut(s)	139, 225, 515, 551, 748
BbsI	GAAGAC	2 cut(s)	159, 222
Bbv12I	GWGCWC	1 cut(s)	266
BbvCI	CCTCAGC	1 cut(s)	630
BbvI	GCAGC	5 cut(s)	60, 336, 373, 401, 569
BccI	CCATC	3 cut(s)	167, 523, 539
BciT130I	CCWGG	1 cut(s)	788
BciVI	GTATCC	1 cut(s)	611
BclI	TGATCA	2 cut(s)	141, 364
BcnI	CCSGG	1 cut(s)	462
BcoDI	GTCTC	4 cut(s)	124, 701, 858, 872
BfaI	CTAG	4 cut(s)	600, 857, 932, 937
BfmI	CTRYAG	1 cut(s)	387
BfuAI	ACCTGC	1 cut(s)	724
BfuI	GTATCC	1 cut(s)	611
BisI	GCNGC	7 cut(s)	49, 186, 350, 353, 387, 390, 558
BlsI	GCNGC	7 cut(s)	50, 187, 351, 354, 388, 391, 559
Bme1390I	CCNGG	2 cut(s)	462, 788
BmgT120I	GGNCC	2 cut(s)	271, 511
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	2 cut(s)	462, 788
BmsI	GCATC	1 cut(s)	388
BpiI	GAAGAC	2 cut(s)	159, 222
BplI	GAGNNNNNCTC	2 cut(s)	681, 713
BpmI	CTGGAG	1 cut(s)	553
Bpu10I	CCTNAGC	2 cut(s)	630, 681
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	462
BsaHI	GRCGYC	2 cut(s)	648, 928
BsaI	GGTCTC	1 cut(s)	701
BsaJI	CCNNGG	2 cut(s)	267, 460
BsaWI	WCCGGW	1 cut(s)	370
BsaXI	ACNNNNNCTCC	2 cut(s)	867, 897
Bse118I	RCCGGY	2 cut(s)	287, 370
Bse1I	ACTGG	1 cut(s)	570
Bse3DI	GCAATG	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	788
BseDI	CCNNGG	2 cut(s)	267, 460
BseGI	GGATG	2 cut(s)	379, 907
BseMI	GCAATG	1 cut(s)	344
BseMII	CTCAG	4 cut(s)	39, 296, 621, 695
BseNI	ACTGG	1 cut(s)	570
BseXI	GCAGC	5 cut(s)	60, 336, 373, 401, 569
Bsh1236I	CGCG	1 cut(s)	678
BshFI	GGCC	3 cut(s)	272, 287, 512
BshTI	ACCGGT	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	266
BsiSI	CCGG	3 cut(s)	288, 371, 462
BslFI	GGGAC	2 cut(s)	443, 659
BsmAI	GTCTC	4 cut(s)	124, 701, 858, 872
BsmBI	CGTCTC	2 cut(s)	858, 872
BsmFI	GGGAC	2 cut(s)	443, 659
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	3 cut(s)	272, 287, 512
Bso31I	GGTCTC	1 cut(s)	701
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	6 cut(s)	21, 141, 364, 574, 765, 847
BspACI	CCGC	2 cut(s)	186, 353
BspANI	GGCC	3 cut(s)	272, 287, 512
BspCNI	CTCAG	4 cut(s)	38, 295, 622, 694
BspFNI	CGCG	1 cut(s)	678
BspHI	TCATGA	1 cut(s)	699
BspLI	GGNNCC	1 cut(s)	513
BspMAI	CTGCAG	1 cut(s)	391
BspMI	ACCTGC	1 cut(s)	724
BspPI	GGATC	1 cut(s)	842
BspQI	GCTCTTC	1 cut(s)	723
BspTNI	GGTCTC	1 cut(s)	701
BsrDI	GCAATG	1 cut(s)	344
BsrFI	RCCGGY	2 cut(s)	287, 370
BsrI	ACTGG	1 cut(s)	570
BssAI	RCCGGY	2 cut(s)	287, 370
BssECI	CCNNGG	2 cut(s)	267, 460
BssMI	GATC	6 cut(s)	21, 141, 364, 574, 765, 847
BssNI	GRCGYC	2 cut(s)	648, 928
Bst2UI	CCWGG	1 cut(s)	788
Bst4CI	ACNGT	3 cut(s)	539, 806, 826
Bst6I	CTCTTC	2 cut(s)	723, 737
BstACI	GRCGYC	2 cut(s)	648, 928
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	2 cut(s)	97, 669
BstDEI	CTNAG	5 cut(s)	25, 282, 630, 681, 923
BstF5I	GGATG	2 cut(s)	379, 907
BstFNI	CGCG	1 cut(s)	678
BstHHI	GCGC	2 cut(s)	535, 680
BstKTI	GATC	6 cut(s)	24, 144, 367, 577, 768, 850
BstMAI	GTCTC	4 cut(s)	124, 701, 858, 872
BstMBI	GATC	6 cut(s)	21, 141, 364, 574, 765, 847
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 563, 677
BstNI	CCWGG	1 cut(s)	788
BstSCI	CCNGG	2 cut(s)	460, 786
BstSFI	CTRYAG	1 cut(s)	387
BstUI	CGCG	1 cut(s)	678
BstV1I	GCAGC	5 cut(s)	60, 336, 373, 401, 569
BstV2I	GAAGAC	2 cut(s)	159, 222
BsuI	GTATCC	1 cut(s)	611
BsuRI	GGCC	3 cut(s)	272, 287, 512
BtsCI	GGATG	2 cut(s)	379, 907
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	3 cut(s)	577, 768, 811
BveI	ACCTGC	1 cut(s)	724
Cac8I	GCNNGC	2 cut(s)	97, 669
CaiI	CAGNNNCTG	1 cut(s)	563
CciI	TCATGA	1 cut(s)	699
CfoI	GCGC	2 cut(s)	535, 680
Cfr10I	RCCGGY	2 cut(s)	287, 370
Cfr13I	GGNCC	2 cut(s)	271, 511
CseI	GACGC	3 cut(s)	63, 124, 656
Csp6I	GTAC	1 cut(s)	916
CspAI	ACCGGT	1 cut(s)	370
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviAII	CATG	2 cut(s)	67, 700
CviJI	RGCY	9 cut(s)	147, 172, 185, 272, 287, 392, 512, 667, 786
CviKI_1	RGCY	9 cut(s)	147, 172, 185, 272, 287, 392, 512, 667, 786
CviQI	GTAC	1 cut(s)	916
DdeI	CTNAG	5 cut(s)	25, 282, 630, 681, 923
DpnI	GATC	6 cut(s)	23, 143, 366, 576, 767, 849
DpnII	GATC	6 cut(s)	21, 141, 364, 574, 765, 847
Eam1104I	CTCTTC	2 cut(s)	723, 737
EarI	CTCTTC	2 cut(s)	723, 737
Eco31I	GGTCTC	1 cut(s)	701
Eco57I	CTGAAG	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	786
Esp3I	CGTCTC	2 cut(s)	858, 872
FaeI	CATG	2 cut(s)	70, 703
FaqI	GGGAC	2 cut(s)	443, 659
FatI	CATG	2 cut(s)	66, 699
FbaI	TGATCA	2 cut(s)	141, 364
Fnu4HI	GCNGC	7 cut(s)	49, 186, 350, 353, 387, 390, 558
FokI	GGATG	2 cut(s)	366, 914
Fsp4HI	GCNGC	7 cut(s)	49, 186, 350, 353, 387, 390, 558
FspAI	RTGCGCAY	1 cut(s)	534
FspBI	CTAG	4 cut(s)	600, 857, 932, 937
FspI	TGCGCA	1 cut(s)	534
GlaI	GCGC	2 cut(s)	534, 679
GluI	GCNGC	7 cut(s)	49, 186, 350, 353, 387, 390, 558
GsuI	CTGGAG	1 cut(s)	553
HaeIII	GGCC	3 cut(s)	272, 287, 512
HapII	CCGG	3 cut(s)	288, 371, 462
HgaI	GACGC	3 cut(s)	63, 124, 656
HhaI	GCGC	2 cut(s)	535, 680
Hin1I	GRCGYC	2 cut(s)	648, 928
Hin1II	CATG	2 cut(s)	70, 703
Hin6I	GCGC	2 cut(s)	533, 678
HinP1I	GCGC	2 cut(s)	533, 678
HincII	GTYRAC	2 cut(s)	475, 711
HindII	GTYRAC	2 cut(s)	475, 711
HinfI	GANTC	2 cut(s)	107, 607
HpaII	CCGG	3 cut(s)	288, 371, 462
HphI	GGTGA	5 cut(s)	139, 225, 515, 551, 748
Hpy166II	GTNNAC	3 cut(s)	475, 587, 711
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	6 cut(s)	259, 578, 600, 656, 683, 700
Hpy8I	GTNNAC	3 cut(s)	475, 587, 711
HpyAV	CCTTC	7 cut(s)	118, 199, 246, 284, 351, 597, 686
HpyCH4III	ACNGT	3 cut(s)	539, 806, 826
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	5 cut(s)	48, 379, 389, 557, 671
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 563, 677
HpyF3I	CTNAG	5 cut(s)	25, 282, 630, 681, 923
HpySE526I	ACGT	1 cut(s)	13
Hsp92I	GRCGYC	2 cut(s)	648, 928
Hsp92II	CATG	2 cut(s)	70, 703
HspAI	GCGC	2 cut(s)	533, 678
Ksp22I	TGATCA	2 cut(s)	141, 364
Kzo9I	GATC	6 cut(s)	21, 141, 364, 574, 765, 847
LguI	GCTCTTC	1 cut(s)	723
Lsp1109I	GCAGC	5 cut(s)	60, 336, 373, 401, 569
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	4 cut(s)	600, 857, 932, 937
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	6 cut(s)	23, 143, 366, 576, 767, 849
MboI	GATC	6 cut(s)	21, 141, 364, 574, 765, 847
MboII	GAAGA	7 cut(s)	164, 222, 320, 740, 751, 754, 766
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	6 cut(s)	36, 222, 437, 638, 672, 704
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	9 cut(s)	204, 262, 366, 456, 577, 625, 663, 900, 929
MseI	TTAA	3 cut(s)	246, 399, 405
MslI	CAYNNNNRTG	3 cut(s)	161, 540, 660
MspI	CCGG	3 cut(s)	288, 371, 462
MspR9I	CCNGG	2 cut(s)	462, 788
Mva1269I	GAATGC	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	788
MvnI	CGCG	1 cut(s)	678
MwoI	GCNNNNNNNGC	3 cut(s)	54, 563, 677
NciI	CCSGG	1 cut(s)	462
NdeII	GATC	6 cut(s)	21, 141, 364, 574, 765, 847
NlaIII	CATG	2 cut(s)	70, 703
NlaIV	GGNNCC	1 cut(s)	513
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	503
NsbI	TGCGCA	1 cut(s)	534
OliI	CACNNNNGTG	1 cut(s)	161
PagI	TCATGA	1 cut(s)	699
PaqCI	CACCTGC	1 cut(s)	724
PciSI	GCTCTTC	1 cut(s)	723
PcsI	WCGNNNNNNNCGW	1 cut(s)	654
PctI	GAATGC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	607
PinAI	ACCGGT	1 cut(s)	370
PkrI	GCNGC	7 cut(s)	50, 187, 351, 354, 388, 391, 559
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PshBI	ATTAAT	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	786
PspGI	CCWGG	1 cut(s)	786
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	2 cut(s)	271, 511
PstI	CTGCAG	1 cut(s)	391
PstNI	CAGNNNCTG	1 cut(s)	563
RsaI	GTAC	1 cut(s)	917
RsaNI	GTAC	1 cut(s)	916
RseI	CAYNNNNRTG	3 cut(s)	161, 540, 660
SapI	GCTCTTC	1 cut(s)	723
SaqAI	TTAA	3 cut(s)	246, 399, 405
SatI	GCNGC	7 cut(s)	49, 186, 350, 353, 387, 390, 558
Sau3AI	GATC	6 cut(s)	21, 141, 364, 574, 765, 847
Sau96I	GGNCC	2 cut(s)	271, 511
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	462, 788
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	1 cut(s)	387
SmiMI	CAYNNNNRTG	3 cut(s)	161, 540, 660
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	6 cut(s)	36, 222, 437, 638, 672, 704
SsiI	CCGC	2 cut(s)	186, 353
SspMI	CTAG	4 cut(s)	600, 857, 932, 937
StyD4I	CCNGG	2 cut(s)	460, 786
TaaI	ACNGT	3 cut(s)	539, 806, 826
TaiI	ACGT	1 cut(s)	16
TasI	AATT	6 cut(s)	36, 222, 437, 638, 672, 704
TauI	GCSGC	2 cut(s)	188, 355
TfiI	GAWTC	1 cut(s)	607
Tru1I	TTAA	3 cut(s)	246, 399, 405
Tru9I	TTAA	3 cut(s)	246, 399, 405
TscAI	CASTG	3 cut(s)	577, 768, 811
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	5 cut(s)	48, 349, 386, 389, 557
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	5 cut(s)	241, 312, 333, 599, 716
TspGWI	ACGGA	1 cut(s)	840
TspRI	CASTG	3 cut(s)	577, 768, 811
VspI	ATTAAT	1 cut(s)	399
XapI	RAATTY	2 cut(s)	222, 638
XbaI	TCTAGA	1 cut(s)	599
XspI	CTAG	4 cut(s)	600, 857, 932, 937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.