Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010296

Physical Location & Seq

Genomic Coordinates Reverse (-)

60507732 .. 60509928

Gene Structure 2197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26888

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCCAGTATTGGGCACCTTCCTATCTTCCATAAACGCTATTGCTTGTCACAATCTGCTCCTCATTCCTGTCCGTTACAAACTTATAAAGGTCACAATCTTCTCTAATCGGAAACAAATTAACTGCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTGCTGCCTGTTTCACGTTCAACGATCTCAGATACGCCAATTCCAAGTTGCAGCAGACGCATTCTTAACATGGCAGAAGCACCAAAACCCAACTCGGCGAGCAAGAATGAGTCGCTGACGCTTGAGAAGGTGAGACAGGGATTGATCAGCCAAGAAGACACCATCGTGTTTAGGCTGATTGAGAGAGCCGCCTTCCCTCTCAACTCTCCTACCTACCACCACAAAATTTCGTCTTCACCTTCTTTGTTTAACTTCATTGTCAAGAGCACCGAGGCCCTTCAATCTCAGGCCGGTAGATACGAAATCCCTGAAGAACTGCCTTTTTTCCCAGAAAACTTACCACCTTCATTGCTGCCGCCTCCTGCTGATCCACCGGTATTGCATCCTGCTGCAGCTTCCATTAATCTTAACAAAAAGATATTGGATATATATTTGAAACAATTGCTTCCTCTGTTTGCTGAACCCGGTGATGATGGAAACTATGCAGCAACTGCCTCCAGTGATCTTGATTGTTTACAGGCAATCTCTAGAAGGATTCATTATGGCTTCTATGTTGCTGAGGTCAAATTCAGGGACGCCCCTCAAGATTATGAGCCTGCAATTCGCGCTCAGGACAGAGAAGGTCTCATGAAATTGTTGACATTTACGAATGTGGAAGAGCAGGTGAAGAAGAGAGTTGAGAAGAAAGCAGTGATCTTTGGGCAAGAAGTGAGCCTTGACAACAACACTAACAGTGTAAAACAAAATGGAACTGTAAATGGAAAATACAAGGTTGATCCGTCTCTAGTTTCTCGTCTCTATGGAGAATGGGTAATGCCTCTCACAAAGGATGTTCAAGTTGAGTACCTCCTTAGACGCCTAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

339

Amino Acids

37.89

Weight (kDa)

8.73

Isoelectric Point (pI)

59.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	213 - 330	1.8e-07	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10870
fragaria_vesca	FvH4_2g41100
malus_domestica	MD08G1057400.v1.1 MD15G1040000.v1.1
prunus_persica	Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1
pyrus_communis	pycom08g04690 pycom15g03750
rosa_chinensis	RchiOBHm_Chr6g0299441
rosa_laevigata	RLG00000011431
rosa_multiflora	Rmu_sc0017526.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168680
rosa_rugosa	Rorug06G0288200 Rorug06G0288300
rosa_samantha	Rh6AG400100 Rh6BG408700 Rh6CG414200 Rh6DG401200
rosa_wichuraiana	Rw6G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
AarI	CACCTGC	1 cut(s)	805
Acc36I	ACCTGC	1 cut(s)	805
AccB1I	GGYRCC	1 cut(s)	14
AccII	CGCG	1 cut(s)	759
AciI	CCGC	2 cut(s)	342, 509
AclWI	GGATC	2 cut(s)	515, 923
AcsI	RAATTY	2 cut(s)	378, 719
AcuI	CTGAAG	1 cut(s)	483
AcyI	GRCGYC	2 cut(s)	729, 1009
AfaI	GTAC	1 cut(s)	998
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgeI	ACCGGT	1 cut(s)	526
AgsI	TTSAA	4 cut(s)	174, 434, 589, 989
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	1 cut(s)	548
AluI	AGCT	1 cut(s)	548
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	4 cut(s)	280, 782, 939, 953
AlwI	GGATC	2 cut(s)	515, 923
AlwNI	CAGNNNCTG	1 cut(s)	644
AoxI	GGCC	2 cut(s)	426, 441
ApeKI	GCWGC	6 cut(s)	157, 204, 505, 542, 545, 638
ApoI	RAATTY	2 cut(s)	378, 719
AseI	ATTAAT	1 cut(s)	555
AsiGI	ACCGGT	1 cut(s)	526
AspLEI	GCGC	1 cut(s)	761
AspS9I	GGNCC	1 cut(s)	427
AsuC2I	CCSGG	1 cut(s)	618
AsuHPI	GGTGA	4 cut(s)	295, 381, 632, 829
BaeGI	GKGCMC	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	14
BbsI	GAAGAC	2 cut(s)	315, 378
Bbv12I	GWGCWC	1 cut(s)	422
BbvCI	CCTCAGC	1 cut(s)	711
BbvI	GCAGC	6 cut(s)	144, 216, 492, 529, 557, 650
BccI	CCATC	2 cut(s)	323, 620
BclI	TGATCA	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	618
BcoDI	GTCTC	4 cut(s)	280, 782, 939, 953
BfaI	CTAG	4 cut(s)	681, 938, 1013, 1018
BfmI	CTRYAG	1 cut(s)	543
BfuAI	ACCTGC	1 cut(s)	805
BisI	GCNGC	8 cut(s)	158, 205, 342, 506, 509, 543, 546, 639
BlsI	GCNGC	8 cut(s)	159, 206, 343, 507, 510, 544, 547, 640
Bme1390I	CCNGG	1 cut(s)	618
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	618
BmsI	GCATC	1 cut(s)	544
BpiI	GAAGAC	2 cut(s)	315, 378
BplI	GAGNNNNNCTC	2 cut(s)	762, 794
BpmI	CTGGAG	1 cut(s)	634
Bpu10I	CCTNAGC	2 cut(s)	711, 762
BpuEI	CTTGAG	2 cut(s)	296, 720
BpuMI	CCSGG	1 cut(s)	618
BsaHI	GRCGYC	2 cut(s)	729, 1009
BsaI	GGTCTC	1 cut(s)	782
BsaJI	CCNNGG	1 cut(s)	423
BsaWI	WCCGGW	1 cut(s)	526
BsaXI	ACNNNNNCTCC	2 cut(s)	948, 978
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse118I	RCCGGY	2 cut(s)	443, 526
Bse1I	ACTGG	2 cut(s)	5, 651
Bse3DI	GCAATG	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	423
BseGI	GGATG	2 cut(s)	535, 988
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMI	GCAATG	1 cut(s)	500
BseMII	CTCAG	4 cut(s)	195, 452, 702, 776
BseNI	ACTGG	2 cut(s)	5, 651
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	17
BseXI	GCAGC	6 cut(s)	144, 216, 492, 529, 557, 650
Bsh1236I	CGCG	1 cut(s)	759
BshFI	GGCC	2 cut(s)	428, 443
BshNI	GGYRCC	1 cut(s)	14
BshTI	ACCGGT	1 cut(s)	526
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	3 cut(s)	444, 527, 618
BslFI	GGGAC	1 cut(s)	740
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	4 cut(s)	280, 782, 939, 953
BsmBI	CGTCTC	2 cut(s)	939, 953
BsmFI	GGGAC	1 cut(s)	740
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	2 cut(s)	428, 443
Bso31I	GGTCTC	1 cut(s)	782
Bsp1286I	GDGCHC	2 cut(s)	17, 422
Bsp143I	GATC	6 cut(s)	177, 297, 520, 655, 846, 928
BspACI	CCGC	2 cut(s)	342, 509
BspANI	GGCC	2 cut(s)	428, 443
BspCNI	CTCAG	4 cut(s)	194, 451, 703, 775
BspFNI	CGCG	1 cut(s)	759
BspHI	TCATGA	1 cut(s)	780
BspLI	GGNNCC	1 cut(s)	16
BspMAI	CTGCAG	1 cut(s)	547
BspMI	ACCTGC	1 cut(s)	805
BspPI	GGATC	2 cut(s)	515, 923
BspQI	GCTCTTC	1 cut(s)	804
BspT107I	GGYRCC	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	782
BsrDI	GCAATG	1 cut(s)	500
BsrFI	RCCGGY	2 cut(s)	443, 526
BsrI	ACTGG	2 cut(s)	5, 651
BssAI	RCCGGY	2 cut(s)	443, 526
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	6 cut(s)	177, 297, 520, 655, 846, 928
BssNI	GRCGYC	2 cut(s)	729, 1009
Bst4CI	ACNGT	2 cut(s)	887, 907
Bst6I	CTCTTC	2 cut(s)	804, 818
BstACI	GRCGYC	2 cut(s)	729, 1009
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	2 cut(s)	253, 750
BstDEI	CTNAG	5 cut(s)	181, 438, 711, 762, 1004
BstF5I	GGATG	2 cut(s)	535, 988
BstFNI	CGCG	1 cut(s)	759
BstHHI	GCGC	1 cut(s)	761
BstKTI	GATC	6 cut(s)	180, 300, 523, 658, 849, 931
BstMAI	GTCTC	4 cut(s)	280, 782, 939, 953
BstMBI	GATC	6 cut(s)	177, 297, 520, 655, 846, 928
BstMWI	GCNNNNNNNGC	3 cut(s)	210, 644, 758
BstSCI	CCNGG	1 cut(s)	616
BstSFI	CTRYAG	1 cut(s)	543
BstSLI	GKGCMC	1 cut(s)	17
BstUI	CGCG	1 cut(s)	759
BstV1I	GCAGC	6 cut(s)	144, 216, 492, 529, 557, 650
BstV2I	GAAGAC	2 cut(s)	315, 378
BsuRI	GGCC	2 cut(s)	428, 443
BtsCI	GGATG	2 cut(s)	535, 988
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	3 cut(s)	658, 849, 892
BveI	ACCTGC	1 cut(s)	805
Cac8I	GCNNGC	2 cut(s)	253, 750
CaiI	CAGNNNCTG	1 cut(s)	644
CciI	TCATGA	1 cut(s)	780
CfoI	GCGC	1 cut(s)	761
Cfr10I	RCCGGY	2 cut(s)	443, 526
Cfr13I	GGNCC	1 cut(s)	427
CseI	GACGC	3 cut(s)	219, 280, 737
Csp6I	GTAC	1 cut(s)	997
CspAI	ACCGGT	1 cut(s)	526
CspCI	CAANNNNNGTGG	4 cut(s)	483, 513, 518, 548
CviAII	CATG	2 cut(s)	223, 781
CviJI	RGCY	9 cut(s)	303, 328, 341, 428, 443, 548, 699, 748, 867
CviKI_1	RGCY	9 cut(s)	303, 328, 341, 428, 443, 548, 699, 748, 867
CviQI	GTAC	1 cut(s)	997
DdeI	CTNAG	5 cut(s)	181, 438, 711, 762, 1004
DpnI	GATC	6 cut(s)	179, 299, 522, 657, 848, 930
DpnII	GATC	6 cut(s)	177, 297, 520, 655, 846, 928
Eam1104I	CTCTTC	2 cut(s)	804, 818
EarI	CTCTTC	2 cut(s)	804, 818
Eco31I	GGTCTC	1 cut(s)	782
Eco57I	CTGAAG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	427
Esp3I	CGTCTC	2 cut(s)	939, 953
FaeI	CATG	2 cut(s)	226, 784
FalI	AAGNNNNNCTT	2 cut(s)	852, 884
FaqI	GGGAC	1 cut(s)	740
FatI	CATG	2 cut(s)	222, 780
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	8 cut(s)	158, 205, 342, 506, 509, 543, 546, 639
FokI	GGATG	2 cut(s)	522, 995
Fsp4HI	GCNGC	8 cut(s)	158, 205, 342, 506, 509, 543, 546, 639
FspBI	CTAG	4 cut(s)	681, 938, 1013, 1018
GlaI	GCGC	1 cut(s)	760
GluI	GCNGC	8 cut(s)	158, 205, 342, 506, 509, 543, 546, 639
GsuI	CTGGAG	1 cut(s)	634
HaeIII	GGCC	2 cut(s)	428, 443
HapII	CCGG	3 cut(s)	444, 527, 618
HgaI	GACGC	3 cut(s)	219, 280, 737
HhaI	GCGC	1 cut(s)	761
Hin1I	GRCGYC	2 cut(s)	729, 1009
Hin1II	CATG	2 cut(s)	226, 784
Hin6I	GCGC	1 cut(s)	759
HinP1I	GCGC	1 cut(s)	759
HincII	GTYRAC	1 cut(s)	792
HindII	GTYRAC	1 cut(s)	792
HinfI	GANTC	2 cut(s)	263, 688
HpaII	CCGG	3 cut(s)	444, 527, 618
HphI	GGTGA	4 cut(s)	295, 381, 632, 829
Hpy166II	GTNNAC	2 cut(s)	668, 792
Hpy188I	TCNGA	2 cut(s)	111, 184
Hpy188III	TCNNGA	6 cut(s)	415, 659, 681, 737, 764, 781
Hpy8I	GTNNAC	2 cut(s)	668, 792
HpyAV	CCTTC	8 cut(s)	28, 274, 355, 402, 440, 507, 678, 767
HpyCH4III	ACNGT	2 cut(s)	887, 907
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	5 cut(s)	204, 535, 545, 638, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	210, 644, 758
HpyF3I	CTNAG	5 cut(s)	181, 438, 711, 762, 1004
HpySE526I	ACGT	1 cut(s)	169
Hsp92I	GRCGYC	2 cut(s)	729, 1009
Hsp92II	CATG	2 cut(s)	226, 784
HspAI	GCGC	1 cut(s)	759
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	6 cut(s)	177, 297, 520, 655, 846, 928
LguI	GCTCTTC	1 cut(s)	804
LmnI	GCTCC	2 cut(s)	63, 131
Lsp1109I	GCAGC	6 cut(s)	144, 216, 492, 529, 557, 650
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	4 cut(s)	681, 938, 1013, 1018
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	3 cut(s)	47, 74, 91
MalI	GATC	6 cut(s)	179, 299, 522, 657, 848, 930
MboI	GATC	6 cut(s)	177, 297, 520, 655, 846, 928
MboII	GAAGA	9 cut(s)	18, 91, 320, 378, 476, 821, 832, 835, 847
MfeI	CAATTG	1 cut(s)	593
MhlI	GDGCHC	2 cut(s)	17, 422
MluCI	AATT	7 cut(s)	117, 192, 378, 593, 719, 753, 785
MlyI	GAGTC	1 cut(s)	272
MseI	TTAA	5 cut(s)	120, 219, 402, 555, 561
MslI	CAYNNNNRTG	1 cut(s)	317
MspI	CCGG	3 cut(s)	444, 527, 618
MspR9I	CCNGG	1 cut(s)	618
MunI	CAATTG	1 cut(s)	593
Mva1269I	GAATGC	1 cut(s)	213
MvnI	CGCG	1 cut(s)	759
MwoI	GCNNNNNNNGC	3 cut(s)	210, 644, 758
NciI	CCSGG	1 cut(s)	618
NdeII	GATC	6 cut(s)	177, 297, 520, 655, 846, 928
NlaIII	CATG	2 cut(s)	226, 784
NlaIV	GGNNCC	1 cut(s)	16
NmeAIII	GCCGAG	1 cut(s)	227
NmuCI	GTSAC	2 cut(s)	47, 91
OliI	CACNNNNGTG	1 cut(s)	317
PagI	TCATGA	1 cut(s)	780
PaqCI	CACCTGC	1 cut(s)	805
PciSI	GCTCTTC	1 cut(s)	804
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	688
PinAI	ACCGGT	1 cut(s)	526
PkrI	GCNGC	8 cut(s)	159, 206, 343, 507, 510, 544, 547, 640
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PshBI	ATTAAT	1 cut(s)	555
PsiI	TTATAA	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	427
PstI	CTGCAG	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	644
RsaI	GTAC	1 cut(s)	998
RsaNI	GTAC	1 cut(s)	997
RseI	CAYNNNNRTG	1 cut(s)	317
SapI	GCTCTTC	1 cut(s)	804
SaqAI	TTAA	5 cut(s)	120, 219, 402, 555, 561
SatI	GCNGC	8 cut(s)	158, 205, 342, 506, 509, 543, 546, 639
Sau3AI	GATC	6 cut(s)	177, 297, 520, 655, 846, 928
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	618
SduI	GDGCHC	2 cut(s)	17, 422
SfaNI	GCATC	1 cut(s)	544
SfcI	CTRYAG	1 cut(s)	543
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	2 cut(s)	275, 735
SmoI	CTYRAG	2 cut(s)	275, 735
Sse9I	AATT	7 cut(s)	117, 192, 378, 593, 719, 753, 785
SsiI	CCGC	2 cut(s)	342, 509
SspMI	CTAG	4 cut(s)	681, 938, 1013, 1018
StyD4I	CCNGG	1 cut(s)	616
TaaI	ACNGT	2 cut(s)	887, 907
TaiI	ACGT	1 cut(s)	172
TasI	AATT	7 cut(s)	117, 192, 378, 593, 719, 753, 785
TauI	GCSGC	2 cut(s)	344, 511
TfiI	GAWTC	1 cut(s)	688
Tru1I	TTAA	5 cut(s)	120, 219, 402, 555, 561
Tru9I	TTAA	5 cut(s)	120, 219, 402, 555, 561
TscAI	CASTG	3 cut(s)	658, 849, 892
TseFI	GTSAC	2 cut(s)	47, 91
TseI	GCWGC	6 cut(s)	157, 204, 505, 542, 545, 638
Tsp45I	GTSAC	2 cut(s)	47, 91
TspDTI	ATGAA	4 cut(s)	397, 489, 680, 797
TspGWI	ACGGA	2 cut(s)	62, 921
TspRI	CASTG	3 cut(s)	658, 849, 892
VspI	ATTAAT	1 cut(s)	555
XapI	RAATTY	2 cut(s)	378, 719
XbaI	TCTAGA	1 cut(s)	680
XspI	CTAG	4 cut(s)	681, 938, 1013, 1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.