Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010296

Physical Location & Seq

Genomic Coordinates Reverse (-)

59728763 .. 59731000

Gene Structure 2238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG400100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGGGGGTTTGGGACTAGTTCATCTTCTTCTGGTTTTTGTTTTAACATCTGGCAGTTGCAGTTGCAGCAGACGCATTCCTAACATGGCAGAAGCACCGAAACCCAACTCGGCGAGCAAGAATGAGTCGCTGACGCTTGAGAAGGTGAGACAGGCATTGATCAGCCAAGAAGACACCATCGTGTTTAGGCTGATTGAGAGAGCCGCCTTCCCTCTCAACTCTCCTACCTACCACCACAAAATTTCGTCTTCACCTTCTTTGTTTAACTTCATTGTCAAGAGCACCGAGGCCCTTCAATCTCAGGCCGGTAGATATGAAATCCCTGAAGAACTGCCTTTTTTCCCAGAAAACTTACCACCTTCATTGCTGCCGCCTCCTGCTGATCAACCGGTATTGCATCCTGCTGCAGCTTCCATTAATCTTAACAAAAAGATATTGGATATATATTTGAAACAATTGCTTCCTCTGTTTGCTGTCCCCGGTGATGATGGAAACTATGCAGCAACTGCCTCCAGTGATCTTGATTGTTTACAGGTATATTGGTTGACATCACTTATGCTATTGGTTTGGTTGGTAACTTGGCCCCATCAAAGTTTCATTGTGCGCATTAGTGATGCTCTTATTCATATTTTAATCCATTCTTTTAAGATTAAATTAGGAACAATGCATATAGTCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

25.08

Weight (kDa)

6.7

Isoelectric Point (pI)

62.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10870
fragaria_vesca	FvH4_2g41100
malus_domestica	MD08G1057400.v1.1 MD15G1040000.v1.1
prunus_persica	Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1
pyrus_communis	pycom08g04690 pycom15g03750
rosa_chinensis	RchiOBHm_Chr6g0299441
rosa_laevigata	RLG00000011431
rosa_multiflora	Rmu_sc0017526.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168680
rosa_rugosa	Rorug06G0288200 Rorug06G0288300
rosa_samantha	Rh6AG400100 Rh6BG408700 Rh6CG414200 Rh6DG401200
rosa_wichuraiana	Rw6G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	605
AccI	GTMKAC	1 cut(s)	675
AciI	CCGC	2 cut(s)	204, 371
AcsI	RAATTY	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	345
AgeI	ACCGGT	1 cut(s)	388
AgsI	TTSAA	2 cut(s)	296, 451
AhlI	ACTAGT	1 cut(s)	16
AleI	CACNNNNGTG	1 cut(s)	179
AluBI	AGCT	1 cut(s)	410
AluI	AGCT	1 cut(s)	410
Alw21I	GWGCWC	1 cut(s)	284
Alw26I	GTCTC	1 cut(s)	142
AlwNI	CAGNNNCTG	1 cut(s)	506
AoxI	GGCC	3 cut(s)	288, 303, 581
ApeKI	GCWGC	5 cut(s)	66, 367, 404, 407, 500
ApoI	RAATTY	1 cut(s)	240
AseI	ATTAAT	1 cut(s)	417
AsiGI	ACCGGT	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	2 cut(s)	289, 582
AsuC2I	CCSGG	1 cut(s)	480
AsuHPI	GGTGA	3 cut(s)	157, 243, 494
BbsI	GAAGAC	2 cut(s)	177, 240
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	5 cut(s)	78, 354, 391, 419, 512
BccI	CCATC	3 cut(s)	185, 482, 594
BclI	TGATCA	2 cut(s)	159, 382
BcnI	CCSGG	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	142
BcuI	ACTAGT	1 cut(s)	16
BfaI	CTAG	2 cut(s)	17, 679
BfmI	CTRYAG	1 cut(s)	405
BisI	GCNGC	7 cut(s)	67, 204, 368, 371, 405, 408, 501
BlsI	GCNGC	7 cut(s)	68, 205, 369, 372, 406, 409, 502
Bme1390I	CCNGG	1 cut(s)	480
BmgT120I	GGNCC	2 cut(s)	289, 582
BmiI	GGNNCC	1 cut(s)	584
BmrFI	CCNGG	1 cut(s)	480
BmsI	GCATC	2 cut(s)	406, 604
BpiI	GAAGAC	2 cut(s)	177, 240
BpmI	CTGGAG	1 cut(s)	496
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	285, 478
BsaWI	WCCGGW	1 cut(s)	388
Bse118I	RCCGGY	2 cut(s)	305, 388
Bse1I	ACTGG	1 cut(s)	513
Bse3DI	GCAATG	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	285, 478
BseGI	GGATG	1 cut(s)	397
BseMI	GCAATG	1 cut(s)	362
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	513
BseXI	GCAGC	5 cut(s)	78, 354, 391, 419, 512
BshFI	GGCC	3 cut(s)	290, 305, 583
BshTI	ACCGGT	1 cut(s)	388
BsiHKAI	GWGCWC	1 cut(s)	284
BsiSI	CCGG	3 cut(s)	306, 389, 480
BslFI	GGGAC	2 cut(s)	27, 461
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	2 cut(s)	27, 461
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	3 cut(s)	290, 305, 583
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	3 cut(s)	159, 382, 517
BspACI	CCGC	2 cut(s)	204, 371
BspANI	GGCC	3 cut(s)	290, 305, 583
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	584
BspMAI	CTGCAG	1 cut(s)	409
BsrDI	GCAATG	1 cut(s)	362
BsrFI	RCCGGY	2 cut(s)	305, 388
BsrI	ACTGG	1 cut(s)	513
BssAI	RCCGGY	2 cut(s)	305, 388
BssECI	CCNNGG	2 cut(s)	285, 478
BssMI	GATC	3 cut(s)	159, 382, 517
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	3 cut(s)	162, 385, 520
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	3 cut(s)	159, 382, 517
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 72, 506
BstSCI	CCNGG	1 cut(s)	478
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	5 cut(s)	78, 354, 391, 419, 512
BstV2I	GAAGAC	2 cut(s)	177, 240
BsuRI	GGCC	3 cut(s)	290, 305, 583
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	520
Cac8I	GCNNGC	1 cut(s)	115
CaiI	CAGNNNCTG	1 cut(s)	506
CfoI	GCGC	1 cut(s)	606
Cfr10I	RCCGGY	2 cut(s)	305, 388
Cfr13I	GGNCC	2 cut(s)	289, 582
CseI	GACGC	2 cut(s)	81, 142
CspAI	ACCGGT	1 cut(s)	388
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	7 cut(s)	165, 190, 203, 290, 305, 410, 583
CviKI_1	RGCY	7 cut(s)	165, 190, 203, 290, 305, 410, 583
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	3 cut(s)	161, 384, 519
DpnII	GATC	3 cut(s)	159, 382, 517
Eco57I	CTGAAG	1 cut(s)	345
EcoO109I	RGGNCCY	1 cut(s)	289
EcoT22I	ATGCAT	1 cut(s)	669
FaeI	CATG	1 cut(s)	88
FaqI	GGGAC	2 cut(s)	27, 461
FatI	CATG	1 cut(s)	84
FbaI	TGATCA	2 cut(s)	159, 382
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	7 cut(s)	67, 204, 368, 371, 405, 408, 501
FokI	GGATG	1 cut(s)	384
Fsp4HI	GCNGC	7 cut(s)	67, 204, 368, 371, 405, 408, 501
FspAI	RTGCGCAY	1 cut(s)	605
FspBI	CTAG	2 cut(s)	17, 679
FspI	TGCGCA	1 cut(s)	605
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	7 cut(s)	67, 204, 368, 371, 405, 408, 501
GsuI	CTGGAG	1 cut(s)	496
HaeIII	GGCC	3 cut(s)	290, 305, 583
HapII	CCGG	3 cut(s)	306, 389, 480
HgaI	GACGC	2 cut(s)	81, 142
HhaI	GCGC	1 cut(s)	606
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	3 cut(s)	306, 389, 480
HphI	GGTGA	3 cut(s)	157, 243, 494
Hpy166II	GTNNAC	3 cut(s)	530, 546, 676
Hpy188III	TCNNGA	2 cut(s)	277, 521
Hpy8I	GTNNAC	3 cut(s)	530, 546, 676
HpyAV	CCTTC	5 cut(s)	136, 217, 264, 302, 369
HpyCH4V	TGCA	6 cut(s)	60, 66, 397, 407, 500, 667
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 72, 506
HpyF3I	CTNAG	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	1 cut(s)	604
Ksp22I	TGATCA	2 cut(s)	159, 382
Kzo9I	GATC	3 cut(s)	159, 382, 517
Lsp1109I	GCAGC	5 cut(s)	78, 354, 391, 419, 512
LweI	GCATC	2 cut(s)	406, 604
MaeI	CTAG	2 cut(s)	17, 679
MaeIII	GTNAC	1 cut(s)	574
MalI	GATC	3 cut(s)	161, 384, 519
MboI	GATC	3 cut(s)	159, 382, 517
MboII	GAAGA	5 cut(s)	17, 20, 182, 240, 338
MfeI	CAATTG	1 cut(s)	455
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	3 cut(s)	240, 455, 653
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	5 cut(s)	222, 280, 384, 474, 520
Mph1103I	ATGCAT	1 cut(s)	669
MseI	TTAA	7 cut(s)	44, 264, 417, 423, 632, 645, 651
MslI	CAYNNNNRTG	1 cut(s)	179
MspI	CCGG	3 cut(s)	306, 389, 480
MspR9I	CCNGG	1 cut(s)	480
MunI	CAATTG	1 cut(s)	455
Mva1269I	GAATGC	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	66, 72, 506
NciI	CCSGG	1 cut(s)	480
NdeII	GATC	3 cut(s)	159, 382, 517
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	584
NmeAIII	GCCGAG	1 cut(s)	89
NsbI	TGCGCA	1 cut(s)	605
NsiI	ATGCAT	1 cut(s)	669
OliI	CACNNNNGTG	1 cut(s)	179
PctI	GAATGC	1 cut(s)	75
PinAI	ACCGGT	1 cut(s)	388
PkrI	GCNGC	7 cut(s)	68, 205, 369, 372, 406, 409, 502
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PshBI	ATTAAT	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	584
PspPI	GGNCC	2 cut(s)	289, 582
PstI	CTGCAG	1 cut(s)	409
PstNI	CAGNNNCTG	1 cut(s)	506
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	7 cut(s)	44, 264, 417, 423, 632, 645, 651
SatI	GCNGC	7 cut(s)	67, 204, 368, 371, 405, 408, 501
Sau3AI	GATC	3 cut(s)	159, 382, 517
Sau96I	GGNCC	2 cut(s)	289, 582
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	480
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	6 cut(s)	147, 230, 256, 361, 412, 537
SfaNI	GCATC	2 cut(s)	406, 604
SfcI	CTRYAG	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SpeI	ACTAGT	1 cut(s)	16
Sse9I	AATT	3 cut(s)	240, 455, 653
SsiI	CCGC	2 cut(s)	204, 371
SspMI	CTAG	2 cut(s)	17, 679
StyD4I	CCNGG	1 cut(s)	478
TasI	AATT	3 cut(s)	240, 455, 653
TauI	GCSGC	2 cut(s)	206, 373
Tru1I	TTAA	7 cut(s)	44, 264, 417, 423, 632, 645, 651
Tru9I	TTAA	7 cut(s)	44, 264, 417, 423, 632, 645, 651
TscAI	CASTG	1 cut(s)	520
TseI	GCWGC	5 cut(s)	66, 367, 404, 407, 500
TspDTI	ATGAA	6 cut(s)	11, 259, 330, 351, 586, 614
TspRI	CASTG	1 cut(s)	520
VspI	ATTAAT	1 cut(s)	417
XapI	RAATTY	1 cut(s)	240
XmiI	GTMKAC	1 cut(s)	675
XspI	CTAG	2 cut(s)	17, 679
Zsp2I	ATGCAT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.