Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010296

Physical Location & Seq

Genomic Coordinates Reverse (-)

59536622 .. 59538106

Gene Structure 1485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G035020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCAGAAGCACCGAAACCCAACTCGGCGAGCAAGAATGAGTCGCTGACGCTTGAGAAGGTGAGACAGGCATTGATCAGCCAAGAAGACACCATCGTGTTTAGGCTGATTGAGAGAGCCGCCTTCCCTCTCAACTCTCCTACCTACCACCACAAAATTTCGTCTTCACCTTCTTTGTTTAACTTCATTGTCAAGAGCACCGAGGCCCTTCAATCTCAGGCCGGTAGATATGAAATCCCTGAAGAACTGCCTTTTTTCCCAGAAAACTTACCACCTTCATTGCTGCCGCCTCCTGCTGATCAACCGGTATTGCATCCTGCTGCAGCTTCCATTAATCTTAACAAAAAGATATTGGATATATATTTGAAACAATTGCTTCCTCTGTTTGCTGTCCCCGGTGATGATGGAAACTATGCAGCAACTGCCTCCAGTGATCTTGATTGTTTACAGAGTTTAGTATTCATCACACTTGCTGCTACTGCAGGCAATTCTAGAAGGATTCATTATGGATACTATGTTGCTGAGGTCAAATTCAGGGACGCCCCTCACGATTATGAGCCTGCAATTCGCGCTCAGGACAGAGAAGGTCTCATGAAATTGTTGACATTTACGAATGTGGAAGAGCAGGTGAAGAAGAGAGTTGAGAAGAAAGCAGTGATCTTTGGGCAAGAAGTGAGCCTTGACGACAACACTAACAGTGTAAAACAAAATGGCACTGTAAATGGAAAATACAAGGTTGATCCGTCTCTAGTTTCTCGTCTCTATGGAGAATGGGTAATGCCTCTCACAAAGGATGTTCAAGTTGAGTACCTCCTTAGACGCCTAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

30.88

Weight (kDa)

6.01

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10870
fragaria_vesca	FvH4_2g41100
malus_domestica	MD08G1057400.v1.1 MD15G1040000.v1.1
prunus_persica	Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1
pyrus_communis	pycom08g04690 pycom15g03750
rosa_chinensis	RchiOBHm_Chr6g0299441
rosa_laevigata	RLG00000011431
rosa_multiflora	Rmu_sc0017526.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168680
rosa_rugosa	Rorug06G0288200 Rorug06G0288300
rosa_samantha	Rh6AG400100 Rh6BG408700 Rh6CG414200 Rh6DG401200
rosa_wichuraiana	Rw6G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	616
Acc36I	ACCTGC	1 cut(s)	616
AccII	CGCG	1 cut(s)	570
AciI	CCGC	2 cut(s)	120, 287
AclWI	GGATC	1 cut(s)	734
AcsI	RAATTY	2 cut(s)	156, 530
AcuI	CTGAAG	1 cut(s)	261
AcyI	GRCGYC	2 cut(s)	540, 820
AfaI	GTAC	1 cut(s)	809
AgeI	ACCGGT	1 cut(s)	304
AgsI	TTSAA	3 cut(s)	212, 367, 800
AleI	CACNNNNGTG	1 cut(s)	95
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
Alw21I	GWGCWC	1 cut(s)	200
Alw26I	GTCTC	4 cut(s)	58, 593, 750, 764
AlwI	GGATC	1 cut(s)	734
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	2 cut(s)	204, 219
ApeKI	GCWGC	5 cut(s)	283, 320, 323, 416, 473
ApoI	RAATTY	2 cut(s)	156, 530
AseI	ATTAAT	1 cut(s)	333
AsiGI	ACCGGT	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	572
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	4 cut(s)	73, 159, 410, 640
BbsI	GAAGAC	2 cut(s)	93, 156
Bbv12I	GWGCWC	1 cut(s)	200
BbvCI	CCTCAGC	1 cut(s)	522
BbvI	GCAGC	5 cut(s)	270, 307, 335, 428, 460
BccI	CCATC	2 cut(s)	101, 398
BciVI	GTATCC	1 cut(s)	503
BclI	TGATCA	2 cut(s)	75, 298
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	4 cut(s)	58, 593, 750, 764
BfaI	CTAG	4 cut(s)	492, 749, 824, 829
BfmI	CTRYAG	2 cut(s)	321, 480
BfuAI	ACCTGC	1 cut(s)	616
BfuI	GTATCC	1 cut(s)	503
BisI	GCNGC	7 cut(s)	120, 284, 287, 321, 324, 417, 474
BlsI	GCNGC	7 cut(s)	121, 285, 288, 322, 325, 418, 475
Bme1390I	CCNGG	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	322
BpiI	GAAGAC	2 cut(s)	93, 156
BplI	GAGNNNNNCTC	2 cut(s)	573, 605
BpmI	CTGGAG	1 cut(s)	412
Bpu10I	CCTNAGC	2 cut(s)	522, 573
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	396
BsaHI	GRCGYC	2 cut(s)	540, 820
BsaI	GGTCTC	1 cut(s)	593
BsaJI	CCNNGG	2 cut(s)	201, 394
BsaWI	WCCGGW	1 cut(s)	304
BsaXI	ACNNNNNCTCC	2 cut(s)	759, 789
Bse118I	RCCGGY	2 cut(s)	221, 304
Bse1I	ACTGG	1 cut(s)	429
Bse3DI	GCAATG	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	201, 394
BseGI	GGATG	2 cut(s)	313, 799
BseMI	GCAATG	1 cut(s)	278
BseMII	CTCAG	3 cut(s)	230, 513, 587
BseNI	ACTGG	1 cut(s)	429
BseXI	GCAGC	5 cut(s)	270, 307, 335, 428, 460
Bsh1236I	CGCG	1 cut(s)	570
BshFI	GGCC	2 cut(s)	206, 221
BshTI	ACCGGT	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	200
BsiSI	CCGG	3 cut(s)	222, 305, 396
BslFI	GGGAC	2 cut(s)	377, 551
BsmAI	GTCTC	4 cut(s)	58, 593, 750, 764
BsmBI	CGTCTC	2 cut(s)	750, 764
BsmFI	GGGAC	2 cut(s)	377, 551
BsnI	GGCC	2 cut(s)	206, 221
Bso31I	GGTCTC	1 cut(s)	593
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	5 cut(s)	75, 298, 433, 657, 739
BspACI	CCGC	2 cut(s)	120, 287
BspANI	GGCC	2 cut(s)	206, 221
BspCNI	CTCAG	3 cut(s)	229, 514, 586
BspFNI	CGCG	1 cut(s)	570
BspHI	TCATGA	1 cut(s)	591
BspMAI	CTGCAG	2 cut(s)	325, 484
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	1 cut(s)	734
BspQI	GCTCTTC	1 cut(s)	615
BspTNI	GGTCTC	1 cut(s)	593
BsrDI	GCAATG	1 cut(s)	278
BsrFI	RCCGGY	2 cut(s)	221, 304
BsrI	ACTGG	1 cut(s)	429
BssAI	RCCGGY	2 cut(s)	221, 304
BssECI	CCNNGG	2 cut(s)	201, 394
BssMI	GATC	5 cut(s)	75, 298, 433, 657, 739
BssNI	GRCGYC	2 cut(s)	540, 820
Bst4CI	ACNGT	2 cut(s)	698, 718
Bst6I	CTCTTC	2 cut(s)	615, 629
BstACI	GRCGYC	2 cut(s)	540, 820
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstC8I	GCNNGC	3 cut(s)	31, 484, 561
BstDEI	CTNAG	4 cut(s)	216, 522, 573, 815
BstF5I	GGATG	2 cut(s)	313, 799
BstFNI	CGCG	1 cut(s)	570
BstHHI	GCGC	1 cut(s)	572
BstKTI	GATC	5 cut(s)	78, 301, 436, 660, 742
BstMAI	GTCTC	4 cut(s)	58, 593, 750, 764
BstMBI	GATC	5 cut(s)	75, 298, 433, 657, 739
BstMWI	GCNNNNNNNGC	3 cut(s)	422, 479, 569
BstSCI	CCNGG	1 cut(s)	394
BstSFI	CTRYAG	2 cut(s)	321, 480
BstUI	CGCG	1 cut(s)	570
BstV1I	GCAGC	5 cut(s)	270, 307, 335, 428, 460
BstV2I	GAAGAC	2 cut(s)	93, 156
BsuI	GTATCC	1 cut(s)	503
BsuRI	GGCC	2 cut(s)	206, 221
BtsCI	GGATG	2 cut(s)	313, 799
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	4 cut(s)	436, 660, 703, 714
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	3 cut(s)	31, 484, 561
CaiI	CAGNNNCTG	1 cut(s)	422
CciI	TCATGA	1 cut(s)	591
CfoI	GCGC	1 cut(s)	572
Cfr10I	RCCGGY	2 cut(s)	221, 304
Cfr13I	GGNCC	1 cut(s)	205
CseI	GACGC	2 cut(s)	58, 548
Csp6I	GTAC	1 cut(s)	808
CspAI	ACCGGT	1 cut(s)	304
CspCI	CAANNNNNGTGG	2 cut(s)	261, 296
CviAII	CATG	1 cut(s)	592
CviJI	RGCY	8 cut(s)	81, 106, 119, 206, 221, 326, 559, 678
CviKI_1	RGCY	8 cut(s)	81, 106, 119, 206, 221, 326, 559, 678
CviQI	GTAC	1 cut(s)	808
DdeI	CTNAG	4 cut(s)	216, 522, 573, 815
DpnI	GATC	5 cut(s)	77, 300, 435, 659, 741
DpnII	GATC	5 cut(s)	75, 298, 433, 657, 739
Eam1104I	CTCTTC	2 cut(s)	615, 629
EarI	CTCTTC	2 cut(s)	615, 629
Eco31I	GGTCTC	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	205
Esp3I	CGTCTC	2 cut(s)	750, 764
FaeI	CATG	1 cut(s)	595
FaiI	YATR	9 cut(s)	231, 359, 361, 414, 507, 516, 555, 593, 765
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FaqI	GGGAC	2 cut(s)	377, 551
FatI	CATG	1 cut(s)	591
FbaI	TGATCA	2 cut(s)	75, 298
Fnu4HI	GCNGC	7 cut(s)	120, 284, 287, 321, 324, 417, 474
FokI	GGATG	2 cut(s)	300, 806
Fsp4HI	GCNGC	7 cut(s)	120, 284, 287, 321, 324, 417, 474
FspBI	CTAG	4 cut(s)	492, 749, 824, 829
GlaI	GCGC	1 cut(s)	571
GluI	GCNGC	7 cut(s)	120, 284, 287, 321, 324, 417, 474
GsuI	CTGGAG	1 cut(s)	412
HaeIII	GGCC	2 cut(s)	206, 221
HapII	CCGG	3 cut(s)	222, 305, 396
HgaI	GACGC	2 cut(s)	58, 548
HhaI	GCGC	1 cut(s)	572
Hin1I	GRCGYC	2 cut(s)	540, 820
Hin1II	CATG	1 cut(s)	595
Hin6I	GCGC	1 cut(s)	570
HinP1I	GCGC	1 cut(s)	570
HincII	GTYRAC	1 cut(s)	603
HindII	GTYRAC	1 cut(s)	603
HinfI	GANTC	2 cut(s)	41, 499
HpaII	CCGG	3 cut(s)	222, 305, 396
HphI	GGTGA	4 cut(s)	73, 159, 410, 640
Hpy166II	GTNNAC	2 cut(s)	446, 603
Hpy188III	TCNNGA	6 cut(s)	193, 437, 492, 548, 575, 592
Hpy8I	GTNNAC	2 cut(s)	446, 603
HpyAV	CCTTC	7 cut(s)	52, 133, 180, 218, 285, 489, 578
HpyCH4III	ACNGT	2 cut(s)	698, 718
HpyCH4V	TGCA	5 cut(s)	313, 323, 416, 482, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	422, 479, 569
HpyF3I	CTNAG	4 cut(s)	216, 522, 573, 815
Hsp92I	GRCGYC	2 cut(s)	540, 820
Hsp92II	CATG	1 cut(s)	595
HspAI	GCGC	1 cut(s)	570
Ksp22I	TGATCA	2 cut(s)	75, 298
Kzo9I	GATC	5 cut(s)	75, 298, 433, 657, 739
LguI	GCTCTTC	1 cut(s)	615
Lsp1109I	GCAGC	5 cut(s)	270, 307, 335, 428, 460
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	4 cut(s)	492, 749, 824, 829
MalI	GATC	5 cut(s)	77, 300, 435, 659, 741
MboI	GATC	5 cut(s)	75, 298, 433, 657, 739
MboII	GAAGA	7 cut(s)	98, 156, 254, 632, 643, 646, 658
MfeI	CAATTG	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	200
MluCI	AATT	6 cut(s)	156, 371, 487, 530, 564, 596
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	9 cut(s)	138, 196, 300, 390, 436, 517, 555, 792, 821
MseI	TTAA	3 cut(s)	180, 333, 339
MslI	CAYNNNNRTG	2 cut(s)	95, 552
MspI	CCGG	3 cut(s)	222, 305, 396
MspR9I	CCNGG	1 cut(s)	396
MunI	CAATTG	1 cut(s)	371
MvnI	CGCG	1 cut(s)	570
MwoI	GCNNNNNNNGC	3 cut(s)	422, 479, 569
NciI	CCSGG	1 cut(s)	396
NdeII	GATC	5 cut(s)	75, 298, 433, 657, 739
NlaIII	CATG	1 cut(s)	595
NmeAIII	GCCGAG	1 cut(s)	5
OliI	CACNNNNGTG	1 cut(s)	95
PagI	TCATGA	1 cut(s)	591
PaqCI	CACCTGC	1 cut(s)	616
PciSI	GCTCTTC	1 cut(s)	615
PcsI	WCGNNNNNNNCGW	1 cut(s)	546
PfeI	GAWTC	1 cut(s)	499
PinAI	ACCGGT	1 cut(s)	304
PkrI	GCNGC	7 cut(s)	121, 285, 288, 322, 325, 418, 475
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PshBI	ATTAAT	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	205
PstI	CTGCAG	2 cut(s)	325, 484
PstNI	CAGNNNCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	809
RsaNI	GTAC	1 cut(s)	808
RseI	CAYNNNNRTG	2 cut(s)	95, 552
SapI	GCTCTTC	1 cut(s)	615
SaqAI	TTAA	3 cut(s)	180, 333, 339
SatI	GCNGC	7 cut(s)	120, 284, 287, 321, 324, 417, 474
Sau3AI	GATC	5 cut(s)	75, 298, 433, 657, 739
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	200
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	2 cut(s)	321, 480
SmiMI	CAYNNNNRTG	2 cut(s)	95, 552
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	6 cut(s)	156, 371, 487, 530, 564, 596
SsiI	CCGC	2 cut(s)	120, 287
SspMI	CTAG	4 cut(s)	492, 749, 824, 829
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	2 cut(s)	698, 718
TasI	AATT	6 cut(s)	156, 371, 487, 530, 564, 596
TauI	GCSGC	2 cut(s)	122, 289
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	3 cut(s)	180, 333, 339
Tru9I	TTAA	3 cut(s)	180, 333, 339
TscAI	CASTG	4 cut(s)	436, 660, 703, 721
TseI	GCWGC	5 cut(s)	283, 320, 323, 416, 473
TspDTI	ATGAA	6 cut(s)	175, 246, 267, 451, 491, 608
TspGWI	ACGGA	1 cut(s)	732
TspRI	CASTG	4 cut(s)	436, 660, 703, 721
VspI	ATTAAT	1 cut(s)	333
XapI	RAATTY	2 cut(s)	156, 530
XbaI	TCTAGA	1 cut(s)	491
XspI	CTAG	4 cut(s)	492, 749, 824, 829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.