Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010296

Physical Location & Seq

Genomic Coordinates Forward (+)

9521514 .. 9523003

Gene Structure 1490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00168680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCAGAAGCACCAAAACCCAACACGGCGAGCAAGAATGATCAGTCGCTGACGCTTGAGAAGGTGAGACAGGCATTGATCAGCCAAGAAGACACCATCGTAGCACTGAGGCCCTTCAATCTCAGGCCGGTAGATATGAAATCCCTGAAGAACTGCCTTTTTTTCCCAGAAAACTTACCACCTTCATTGCTGCCGCCTCCTGCTGATCCACCGGTATTGCATCCTGCTGCAGCTTCCATTAATCTTAACAAAAAGATATTGGATATATATTTGAAACAACTGCTTCCTCTGTTTGCTGTCCCCGGTGATGATGGAAACTATGCAGCAACTGCCTCCAGTGATCTTGATTGTTTACAGGCAATCTCTAGAAGGATTCATTATGGATACTATGTTGCTGAGGTCAAATTCAGGGACGCCCCTCAAGATTATGAGCCTGCAATTCGCGCTCAGGACAGAGAAGGTCTCATGAAATTGTTGACATTTACGAATGTGGAAGAGCAGGTGAAGAAGAGAGTTGAGAAGAAAGCAGTGATCTTTGGGCAAGAAGTGAGCCTTGACAACAACACTAACAGTGTAAAACAAAATGGAACTCTAAATGGAAAATACAAGGTTGATCCGTCTCTAGTTTCTCGTCTCTATGCAGAATGGGTAATGCCTCTCACAAAGGATGTTCAAGTTGAGTACCTCCTTAGACGCCTAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

26.32

Weight (kDa)

7.68

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	108 - 225	3.5e-08	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10870
fragaria_vesca	FvH4_2g41100
malus_domestica	MD08G1057400.v1.1 MD15G1040000.v1.1
prunus_persica	Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1
pyrus_communis	pycom08g04690 pycom15g03750
rosa_chinensis	RchiOBHm_Chr6g0299441
rosa_laevigata	RLG00000011431
rosa_multiflora	Rmu_sc0017526.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168680
rosa_rugosa	Rorug06G0288200 Rorug06G0288300
rosa_samantha	Rh6AG400100 Rh6BG408700 Rh6CG414200 Rh6DG401200
rosa_wichuraiana	Rw6G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	490
Acc36I	ACCTGC	1 cut(s)	490
AccII	CGCG	1 cut(s)	444
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	2 cut(s)	200, 608
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	167
AcyI	GRCGYC	2 cut(s)	414, 694
AfaI	GTAC	1 cut(s)	683
AgeI	ACCGGT	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	118, 274, 674
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw26I	GTCTC	4 cut(s)	61, 467, 624, 638
AlwI	GGATC	2 cut(s)	200, 608
AlwNI	CAGNNNCTG	2 cut(s)	49, 329
AoxI	GGCC	2 cut(s)	110, 125
ApeKI	GCWGC	4 cut(s)	190, 227, 230, 323
ApoI	RAATTY	1 cut(s)	404
AseI	ATTAAT	1 cut(s)	240
AsiGI	ACCGGT	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	111
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	3 cut(s)	76, 317, 514
BbsI	GAAGAC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	4 cut(s)	177, 214, 242, 335
BccI	CCATC	2 cut(s)	104, 305
BceAI	ACGGC	1 cut(s)	42
BciVI	GTATCC	1 cut(s)	377
BclI	TGATCA	2 cut(s)	40, 78
BcnI	CCSGG	1 cut(s)	303
BcoDI	GTCTC	4 cut(s)	61, 467, 624, 638
BfaI	CTAG	4 cut(s)	366, 623, 698, 703
BfmI	CTRYAG	1 cut(s)	228
BfuAI	ACCTGC	1 cut(s)	490
BfuI	GTATCC	1 cut(s)	377
BisI	GCNGC	5 cut(s)	191, 194, 228, 231, 324
BlsI	GCNGC	5 cut(s)	192, 195, 229, 232, 325
Bme1390I	CCNGG	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	96
BplI	GAGNNNNNCTC	2 cut(s)	447, 479
BpmI	CTGGAG	1 cut(s)	319
Bpu10I	CCTNAGC	2 cut(s)	396, 447
BpuEI	CTTGAG	2 cut(s)	77, 405
BpuMI	CCSGG	1 cut(s)	303
BsaHI	GRCGYC	2 cut(s)	414, 694
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	301
BsaWI	WCCGGW	1 cut(s)	211
Bse118I	RCCGGY	2 cut(s)	127, 211
Bse1I	ACTGG	1 cut(s)	336
Bse3DI	GCAATG	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	2 cut(s)	220, 673
BseMI	GCAATG	1 cut(s)	185
BseMII	CTCAG	4 cut(s)	98, 136, 387, 461
BseNI	ACTGG	1 cut(s)	336
BseXI	GCAGC	4 cut(s)	177, 214, 242, 335
Bsh1236I	CGCG	1 cut(s)	444
BshFI	GGCC	2 cut(s)	112, 127
BshTI	ACCGGT	1 cut(s)	211
BsiSI	CCGG	3 cut(s)	128, 212, 303
BslFI	GGGAC	2 cut(s)	284, 425
BsmAI	GTCTC	4 cut(s)	61, 467, 624, 638
BsmBI	CGTCTC	2 cut(s)	624, 638
BsmFI	GGGAC	2 cut(s)	284, 425
BsnI	GGCC	2 cut(s)	112, 127
Bso31I	GGTCTC	1 cut(s)	467
Bsp143I	GATC	6 cut(s)	40, 78, 205, 340, 531, 613
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	2 cut(s)	112, 127
BspCNI	CTCAG	4 cut(s)	99, 135, 388, 460
BspFNI	CGCG	1 cut(s)	444
BspHI	TCATGA	1 cut(s)	465
BspMAI	CTGCAG	1 cut(s)	232
BspMI	ACCTGC	1 cut(s)	490
BspPI	GGATC	2 cut(s)	200, 608
BspQI	GCTCTTC	1 cut(s)	489
BspTNI	GGTCTC	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	185
BsrFI	RCCGGY	2 cut(s)	127, 211
BsrI	ACTGG	1 cut(s)	336
BssAI	RCCGGY	2 cut(s)	127, 211
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	6 cut(s)	40, 78, 205, 340, 531, 613
BssNI	GRCGYC	2 cut(s)	414, 694
Bst4CI	ACNGT	1 cut(s)	572
Bst6I	CTCTTC	2 cut(s)	489, 503
BstACI	GRCGYC	2 cut(s)	414, 694
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	31, 435
BstDEI	CTNAG	5 cut(s)	107, 122, 396, 447, 689
BstF5I	GGATG	2 cut(s)	220, 673
BstFNI	CGCG	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	6 cut(s)	43, 81, 208, 343, 534, 616
BstMAI	GTCTC	4 cut(s)	61, 467, 624, 638
BstMBI	GATC	6 cut(s)	40, 78, 205, 340, 531, 613
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 443
BstSCI	CCNGG	1 cut(s)	301
BstSFI	CTRYAG	1 cut(s)	228
BstUI	CGCG	1 cut(s)	444
BstV1I	GCAGC	4 cut(s)	177, 214, 242, 335
BstV2I	GAAGAC	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	377
BsuRI	GGCC	2 cut(s)	112, 127
BtsCI	GGATG	2 cut(s)	220, 673
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	4 cut(s)	104, 343, 534, 577
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	2 cut(s)	31, 435
CaiI	CAGNNNCTG	2 cut(s)	49, 329
CciI	TCATGA	1 cut(s)	465
CfoI	GCGC	1 cut(s)	446
Cfr10I	RCCGGY	2 cut(s)	127, 211
Cfr13I	GGNCC	1 cut(s)	111
CseI	GACGC	2 cut(s)	61, 422
Csp6I	GTAC	1 cut(s)	682
CspAI	ACCGGT	1 cut(s)	211
CspCI	CAANNNNNGTGG	4 cut(s)	168, 198, 203, 233
CviAII	CATG	1 cut(s)	466
CviJI	RGCY	6 cut(s)	84, 112, 127, 233, 433, 552
CviKI_1	RGCY	6 cut(s)	84, 112, 127, 233, 433, 552
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	5 cut(s)	107, 122, 396, 447, 689
DpnI	GATC	6 cut(s)	42, 80, 207, 342, 533, 615
DpnII	GATC	6 cut(s)	40, 78, 205, 340, 531, 613
Eam1104I	CTCTTC	2 cut(s)	489, 503
EarI	CTCTTC	2 cut(s)	489, 503
Eco31I	GGTCTC	1 cut(s)	467
Eco57I	CTGAAG	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	111
Esp3I	CGTCTC	2 cut(s)	624, 638
FaeI	CATG	1 cut(s)	469
FaiI	YATR	9 cut(s)	137, 266, 268, 321, 381, 390, 429, 467, 639
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FaqI	GGGAC	2 cut(s)	284, 425
FatI	CATG	1 cut(s)	465
FbaI	TGATCA	2 cut(s)	40, 78
Fnu4HI	GCNGC	5 cut(s)	191, 194, 228, 231, 324
FokI	GGATG	2 cut(s)	207, 680
Fsp4HI	GCNGC	5 cut(s)	191, 194, 228, 231, 324
FspBI	CTAG	4 cut(s)	366, 623, 698, 703
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	5 cut(s)	191, 194, 228, 231, 324
GsuI	CTGGAG	1 cut(s)	319
HaeIII	GGCC	2 cut(s)	112, 127
HapII	CCGG	3 cut(s)	128, 212, 303
HgaI	GACGC	2 cut(s)	61, 422
HhaI	GCGC	1 cut(s)	446
Hin1I	GRCGYC	2 cut(s)	414, 694
Hin1II	CATG	1 cut(s)	469
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HinfI	GANTC	1 cut(s)	373
HpaII	CCGG	3 cut(s)	128, 212, 303
HphI	GGTGA	3 cut(s)	76, 317, 514
Hpy166II	GTNNAC	2 cut(s)	353, 477
Hpy188III	TCNNGA	5 cut(s)	344, 366, 422, 449, 466
Hpy8I	GTNNAC	2 cut(s)	353, 477
HpyAV	CCTTC	5 cut(s)	55, 124, 192, 363, 452
HpyCH4III	ACNGT	1 cut(s)	572
HpyCH4V	TGCA	5 cut(s)	220, 230, 323, 437, 641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 443
HpyF3I	CTNAG	5 cut(s)	107, 122, 396, 447, 689
Hsp92I	GRCGYC	2 cut(s)	414, 694
Hsp92II	CATG	1 cut(s)	469
HspAI	GCGC	1 cut(s)	444
Ksp22I	TGATCA	2 cut(s)	40, 78
Kzo9I	GATC	6 cut(s)	40, 78, 205, 340, 531, 613
LguI	GCTCTTC	1 cut(s)	489
Lsp1109I	GCAGC	4 cut(s)	177, 214, 242, 335
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	4 cut(s)	366, 623, 698, 703
MalI	GATC	6 cut(s)	42, 80, 207, 342, 533, 615
MboI	GATC	6 cut(s)	40, 78, 205, 340, 531, 613
MboII	GAAGA	6 cut(s)	101, 160, 506, 517, 520, 532
MluCI	AATT	3 cut(s)	404, 438, 470
MnlI	CCTC	8 cut(s)	102, 207, 297, 343, 391, 429, 666, 695
MseI	TTAA	2 cut(s)	240, 246
MspI	CCGG	3 cut(s)	128, 212, 303
MspR9I	CCNGG	1 cut(s)	303
MvnI	CGCG	1 cut(s)	444
MwoI	GCNNNNNNNGC	2 cut(s)	329, 443
NciI	CCSGG	1 cut(s)	303
NdeII	GATC	6 cut(s)	40, 78, 205, 340, 531, 613
NlaIII	CATG	1 cut(s)	469
PagI	TCATGA	1 cut(s)	465
PaqCI	CACCTGC	1 cut(s)	490
PciSI	GCTCTTC	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	373
PinAI	ACCGGT	1 cut(s)	211
PkrI	GCNGC	5 cut(s)	192, 195, 229, 232, 325
PshBI	ATTAAT	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	232
PstNI	CAGNNNCTG	2 cut(s)	49, 329
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
SapI	GCTCTTC	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	240, 246
SatI	GCNGC	5 cut(s)	191, 194, 228, 231, 324
Sau3AI	GATC	6 cut(s)	40, 78, 205, 340, 531, 613
Sau96I	GGNCC	1 cut(s)	111
ScrFI	CCNGG	1 cut(s)	303
SetI	ASST	8 cut(s)	66, 184, 235, 402, 463, 504, 612, 687
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	56, 420
SmoI	CTYRAG	2 cut(s)	56, 420
Sse9I	AATT	3 cut(s)	404, 438, 470
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	4 cut(s)	366, 623, 698, 703
StyD4I	CCNGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	572
TasI	AATT	3 cut(s)	404, 438, 470
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	2 cut(s)	240, 246
Tru9I	TTAA	2 cut(s)	240, 246
TscAI	CASTG	4 cut(s)	111, 343, 534, 577
TseI	GCWGC	4 cut(s)	190, 227, 230, 323
TspDTI	ATGAA	4 cut(s)	152, 174, 365, 482
TspGWI	ACGGA	1 cut(s)	606
TspRI	CASTG	4 cut(s)	111, 343, 534, 577
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	1 cut(s)	404
XbaI	TCTAGA	1 cut(s)	365
XspI	CTAG	4 cut(s)	366, 623, 698, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.