Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010296

Physical Location & Seq

Genomic Coordinates Reverse (-)

59870010 .. 59872208

Gene Structure 2199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG414200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCAGAAGCACCAAAACCCAACTCGGCGAGCAAGAATGAGTCGCTGACGCTTGAGAAGGTGAGACAGGGATTGATCAGCCAAGAAGACACCATCGTGTTTAGGCTGATTGAGAGAGCCGCCTTCCCTCTCAACTCTCCTACCTACCACCACAAAATTTCGTCTTCACCTTCTTTGTTTAACTTCATTGTCAAGAGCACCGAGGCCCTTCAATCTCAGGCCGGTAGATATGAAATCCCTGAAGAACTGCCTTTTTTTCTAGAAAACTTACCACCTTCATTGCTGCCGCCTCCTGCTGATCCACCGGTATTGCATCCTGCTGCAGCTTCCATTAATCTTAACAAAAAGATATTGGATATATATTTGAAACAATTGCTTCCTCTGTTTGCTGTCCCCGGTGATGATGGAAACTATGCAGCAACTGCCTCCAGTGATCTTGATTGTTTACAGGCAATCTCTAGAAGGATTCATTATGGATACTATGTTGCTGAGGTCAAATTCAGGGACGCCCCTCAAGATTATGAGCCTGCAATTCGCGCTCAGGACAGAGAAGGTCTCATGAAATTGTTGACATTTACGAATGTGGAAGAGCAGGTGAAGAAGAGAGTTGAGAAGAAAGCAGTGATCTTTGGGCAAGAAGTGAGCCTTGACAACAACACTAACAGTGTAAAACAAAATGGAACTGTAAATGGAAAATACAAGGTTGATCCGTCTCTAGTTTCTCGTCTCTATGGAGAATGGGTAATGCCTCTCACAAAGGATGTTCAAGTTGAGTACCTCCTTAGACGCCTAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

29.77

Weight (kDa)

6.15

Isoelectric Point (pI)

55.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	139 - 256	7.3e-08	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10870
fragaria_vesca	FvH4_2g41100
malus_domestica	MD08G1057400.v1.1 MD15G1040000.v1.1
prunus_persica	Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1
pyrus_communis	pycom08g04690 pycom15g03750
rosa_chinensis	RchiOBHm_Chr6g0299441
rosa_laevigata	RLG00000011431
rosa_multiflora	Rmu_sc0017526.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168680
rosa_rugosa	Rorug06G0288200 Rorug06G0288300
rosa_samantha	Rh6AG400100 Rh6BG408700 Rh6CG414200 Rh6DG401200
rosa_wichuraiana	Rw6G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	583
Acc36I	ACCTGC	1 cut(s)	583
AccII	CGCG	1 cut(s)	537
AciI	CCGC	2 cut(s)	120, 287
AclWI	GGATC	2 cut(s)	293, 701
AcsI	RAATTY	2 cut(s)	156, 497
AcuI	CTGAAG	1 cut(s)	261
AcyI	GRCGYC	2 cut(s)	507, 787
AfaI	GTAC	1 cut(s)	776
AgeI	ACCGGT	1 cut(s)	304
AgsI	TTSAA	3 cut(s)	212, 367, 767
AleI	CACNNNNGTG	1 cut(s)	95
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
Alw21I	GWGCWC	1 cut(s)	200
Alw26I	GTCTC	4 cut(s)	58, 560, 717, 731
AlwI	GGATC	2 cut(s)	293, 701
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	2 cut(s)	204, 219
ApeKI	GCWGC	4 cut(s)	283, 320, 323, 416
ApoI	RAATTY	2 cut(s)	156, 497
AseI	ATTAAT	1 cut(s)	333
AsiGI	ACCGGT	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	539
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	4 cut(s)	73, 159, 410, 607
BbsI	GAAGAC	2 cut(s)	93, 156
Bbv12I	GWGCWC	1 cut(s)	200
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	4 cut(s)	270, 307, 335, 428
BccI	CCATC	2 cut(s)	101, 398
BciVI	GTATCC	1 cut(s)	470
BclI	TGATCA	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	4 cut(s)	58, 560, 717, 731
BfaI	CTAG	5 cut(s)	260, 459, 716, 791, 796
BfmI	CTRYAG	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	583
BfuI	GTATCC	1 cut(s)	470
BisI	GCNGC	6 cut(s)	120, 284, 287, 321, 324, 417
BlsI	GCNGC	6 cut(s)	121, 285, 288, 322, 325, 418
Bme1390I	CCNGG	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	322
BpiI	GAAGAC	2 cut(s)	93, 156
BplI	GAGNNNNNCTC	2 cut(s)	540, 572
BpmI	CTGGAG	1 cut(s)	412
Bpu10I	CCTNAGC	2 cut(s)	489, 540
BpuEI	CTTGAG	2 cut(s)	74, 498
BpuMI	CCSGG	1 cut(s)	396
BsaHI	GRCGYC	2 cut(s)	507, 787
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	2 cut(s)	201, 394
BsaWI	WCCGGW	1 cut(s)	304
BsaXI	ACNNNNNCTCC	2 cut(s)	726, 756
Bse118I	RCCGGY	2 cut(s)	221, 304
Bse1I	ACTGG	1 cut(s)	429
Bse3DI	GCAATG	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	201, 394
BseGI	GGATG	2 cut(s)	313, 766
BseMI	GCAATG	1 cut(s)	278
BseMII	CTCAG	3 cut(s)	230, 480, 554
BseNI	ACTGG	1 cut(s)	429
BseXI	GCAGC	4 cut(s)	270, 307, 335, 428
Bsh1236I	CGCG	1 cut(s)	537
BshFI	GGCC	2 cut(s)	206, 221
BshTI	ACCGGT	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	200
BsiSI	CCGG	3 cut(s)	222, 305, 396
BslFI	GGGAC	2 cut(s)	377, 518
BsmAI	GTCTC	4 cut(s)	58, 560, 717, 731
BsmBI	CGTCTC	2 cut(s)	717, 731
BsmFI	GGGAC	2 cut(s)	377, 518
BsnI	GGCC	2 cut(s)	206, 221
Bso31I	GGTCTC	1 cut(s)	560
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	5 cut(s)	75, 298, 433, 624, 706
BspACI	CCGC	2 cut(s)	120, 287
BspANI	GGCC	2 cut(s)	206, 221
BspCNI	CTCAG	3 cut(s)	229, 481, 553
BspFNI	CGCG	1 cut(s)	537
BspHI	TCATGA	1 cut(s)	558
BspMAI	CTGCAG	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	583
BspPI	GGATC	2 cut(s)	293, 701
BspQI	GCTCTTC	1 cut(s)	582
BspTNI	GGTCTC	1 cut(s)	560
BsrDI	GCAATG	1 cut(s)	278
BsrFI	RCCGGY	2 cut(s)	221, 304
BsrI	ACTGG	1 cut(s)	429
BssAI	RCCGGY	2 cut(s)	221, 304
BssECI	CCNNGG	2 cut(s)	201, 394
BssMI	GATC	5 cut(s)	75, 298, 433, 624, 706
BssNI	GRCGYC	2 cut(s)	507, 787
Bst4CI	ACNGT	2 cut(s)	665, 685
Bst6I	CTCTTC	2 cut(s)	582, 596
BstACI	GRCGYC	2 cut(s)	507, 787
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstC8I	GCNNGC	2 cut(s)	31, 528
BstDEI	CTNAG	4 cut(s)	216, 489, 540, 782
BstF5I	GGATG	2 cut(s)	313, 766
BstFNI	CGCG	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	5 cut(s)	78, 301, 436, 627, 709
BstMAI	GTCTC	4 cut(s)	58, 560, 717, 731
BstMBI	GATC	5 cut(s)	75, 298, 433, 624, 706
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 536
BstSCI	CCNGG	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	4 cut(s)	270, 307, 335, 428
BstV2I	GAAGAC	2 cut(s)	93, 156
BsuI	GTATCC	1 cut(s)	470
BsuRI	GGCC	2 cut(s)	206, 221
BtsCI	GGATG	2 cut(s)	313, 766
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	3 cut(s)	436, 627, 670
BveI	ACCTGC	1 cut(s)	583
Cac8I	GCNNGC	2 cut(s)	31, 528
CaiI	CAGNNNCTG	1 cut(s)	422
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	1 cut(s)	539
Cfr10I	RCCGGY	2 cut(s)	221, 304
Cfr13I	GGNCC	1 cut(s)	205
CseI	GACGC	2 cut(s)	58, 515
Csp6I	GTAC	1 cut(s)	775
CspAI	ACCGGT	1 cut(s)	304
CspCI	CAANNNNNGTGG	4 cut(s)	261, 291, 296, 326
CviAII	CATG	1 cut(s)	559
CviJI	RGCY	8 cut(s)	81, 106, 119, 206, 221, 326, 526, 645
CviKI_1	RGCY	8 cut(s)	81, 106, 119, 206, 221, 326, 526, 645
CviQI	GTAC	1 cut(s)	775
DdeI	CTNAG	4 cut(s)	216, 489, 540, 782
DpnI	GATC	5 cut(s)	77, 300, 435, 626, 708
DpnII	GATC	5 cut(s)	75, 298, 433, 624, 706
Eam1104I	CTCTTC	2 cut(s)	582, 596
EarI	CTCTTC	2 cut(s)	582, 596
Eco31I	GGTCTC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	205
Esp3I	CGTCTC	2 cut(s)	717, 731
FaeI	CATG	1 cut(s)	562
FaiI	YATR	9 cut(s)	231, 359, 361, 414, 474, 483, 522, 560, 732
FalI	AAGNNNNNCTT	2 cut(s)	630, 662
FaqI	GGGAC	2 cut(s)	377, 518
FatI	CATG	1 cut(s)	558
FbaI	TGATCA	1 cut(s)	75
Fnu4HI	GCNGC	6 cut(s)	120, 284, 287, 321, 324, 417
FokI	GGATG	2 cut(s)	300, 773
Fsp4HI	GCNGC	6 cut(s)	120, 284, 287, 321, 324, 417
FspBI	CTAG	5 cut(s)	260, 459, 716, 791, 796
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	6 cut(s)	120, 284, 287, 321, 324, 417
GsuI	CTGGAG	1 cut(s)	412
HaeIII	GGCC	2 cut(s)	206, 221
HapII	CCGG	3 cut(s)	222, 305, 396
HgaI	GACGC	2 cut(s)	58, 515
HhaI	GCGC	1 cut(s)	539
Hin1I	GRCGYC	2 cut(s)	507, 787
Hin1II	CATG	1 cut(s)	562
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HinfI	GANTC	2 cut(s)	41, 466
HpaII	CCGG	3 cut(s)	222, 305, 396
HphI	GGTGA	4 cut(s)	73, 159, 410, 607
Hpy166II	GTNNAC	2 cut(s)	446, 570
Hpy188III	TCNNGA	7 cut(s)	193, 260, 437, 459, 515, 542, 559
Hpy8I	GTNNAC	2 cut(s)	446, 570
HpyAV	CCTTC	7 cut(s)	52, 133, 180, 218, 285, 456, 545
HpyCH4III	ACNGT	2 cut(s)	665, 685
HpyCH4V	TGCA	4 cut(s)	313, 323, 416, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 536
HpyF3I	CTNAG	4 cut(s)	216, 489, 540, 782
Hsp92I	GRCGYC	2 cut(s)	507, 787
Hsp92II	CATG	1 cut(s)	562
HspAI	GCGC	1 cut(s)	537
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	5 cut(s)	75, 298, 433, 624, 706
LguI	GCTCTTC	1 cut(s)	582
Lsp1109I	GCAGC	4 cut(s)	270, 307, 335, 428
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	5 cut(s)	260, 459, 716, 791, 796
MalI	GATC	5 cut(s)	77, 300, 435, 626, 708
MboI	GATC	5 cut(s)	75, 298, 433, 624, 706
MboII	GAAGA	7 cut(s)	98, 156, 254, 599, 610, 613, 625
MfeI	CAATTG	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	200
MluCI	AATT	5 cut(s)	156, 371, 497, 531, 563
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	9 cut(s)	138, 196, 300, 390, 436, 484, 522, 759, 788
MseI	TTAA	3 cut(s)	180, 333, 339
MslI	CAYNNNNRTG	1 cut(s)	95
MspI	CCGG	3 cut(s)	222, 305, 396
MspR9I	CCNGG	1 cut(s)	396
MunI	CAATTG	1 cut(s)	371
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	2 cut(s)	422, 536
NciI	CCSGG	1 cut(s)	396
NdeII	GATC	5 cut(s)	75, 298, 433, 624, 706
NlaIII	CATG	1 cut(s)	562
NmeAIII	GCCGAG	1 cut(s)	5
OliI	CACNNNNGTG	1 cut(s)	95
PagI	TCATGA	1 cut(s)	558
PaqCI	CACCTGC	1 cut(s)	583
PciSI	GCTCTTC	1 cut(s)	582
PfeI	GAWTC	1 cut(s)	466
PinAI	ACCGGT	1 cut(s)	304
PkrI	GCNGC	6 cut(s)	121, 285, 288, 322, 325, 418
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PshBI	ATTAAT	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	776
RsaNI	GTAC	1 cut(s)	775
RseI	CAYNNNNRTG	1 cut(s)	95
SapI	GCTCTTC	1 cut(s)	582
SaqAI	TTAA	3 cut(s)	180, 333, 339
SatI	GCNGC	6 cut(s)	120, 284, 287, 321, 324, 417
Sau3AI	GATC	5 cut(s)	75, 298, 433, 624, 706
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	200
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	2 cut(s)	53, 513
SmoI	CTYRAG	2 cut(s)	53, 513
Sse9I	AATT	5 cut(s)	156, 371, 497, 531, 563
SsiI	CCGC	2 cut(s)	120, 287
SspMI	CTAG	5 cut(s)	260, 459, 716, 791, 796
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	2 cut(s)	665, 685
TasI	AATT	5 cut(s)	156, 371, 497, 531, 563
TauI	GCSGC	2 cut(s)	122, 289
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	3 cut(s)	180, 333, 339
Tru9I	TTAA	3 cut(s)	180, 333, 339
TscAI	CASTG	3 cut(s)	436, 627, 670
TseI	GCWGC	4 cut(s)	283, 320, 323, 416
TspDTI	ATGAA	5 cut(s)	175, 246, 267, 458, 575
TspGWI	ACGGA	1 cut(s)	699
TspRI	CASTG	3 cut(s)	436, 627, 670
VspI	ATTAAT	1 cut(s)	333
XapI	RAATTY	2 cut(s)	156, 497
XbaI	TCTAGA	2 cut(s)	259, 458
XspI	CTAG	5 cut(s)	260, 459, 716, 791, 796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.