Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008511

Physical Location & Seq

Genomic Coordinates Reverse (-)

472301 .. 475183

Gene Structure 2883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00930.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCGGCAGATCTGGTGCTAGACACGGCGATCAGAGACTGGGTTCTGATCCCTCTCTCGGTGGTCATGGTCCTCATCGGAGTCCTCCGTTACTTCGTCTCCAAGCTCATGCGCTCCAACCAAGTCCCCGACGCCAAAATCGTCAAAGAAGGGCAATTGGTTATTAGGGCTCGCAATTTGCGTGCTTCTGCTAATTTCATACCTCCCAAGTCGTTTCGCGCTCGCCGGTTTTACTTCAGCAACGAGGAAAATGGTTTGTTATTTGTTCCCAAGGGTCAGGCACAGAATCCACAAGCGCAGATGTTCTCTGATCCCAACATGGCTATGGACATGATGAAGAAAAATTTGTCTATGATCGTACCCCAGACTCTTACATTTGCATGGGTCAACTTTTTCTTCTCTGGATTTGTAGCAGCCAAAATACCCTTTCCTCTTACTCAGAGGTTCAGGTCGATGTTGCAAAATGGGATTGACTTGAGCACTGTTGATGTCAGCTATGTCAGCAGCCGCTCATGGTACTTTCTCAATCTGTTTGGATTGAGAGGCTTGTTCAGTCTCATTCTGGGTGAAGAAAATGCAATGGATGATACTCAGCGTATGATGCAAATGAGTGGGTTCGGCTTTGATCCATCAAAGAGTCTGGGTGCTGAGAAGGACAGCCTTGATATAATCCAGCACGATTGGGCCTTACCGAAATTTGAGCATCGTGCTGAAGCTGTATTGAAGAAACTTGTCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF106

Protein Analysis

247

Amino Acids

28.03

Weight (kDa)

9.73

Isoelectric Point (pI)

26.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMC3_TMCO1	PF01956	4 - 192	8.2e-52	Integral membrane protein EMC3/TMCO1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12590
fragaria_vesca	FvH4_3g00930 FvH4_3g00930 FvH4_3g00930 FvH4_3g00930 FvH4_3g00930
malus_domestica	MD05G1358200.v1.1 MD10G1332200.v1.1 MD10G1332300.v1.1
prunus_persica	Prupe.4G009900_v2.0.a1
pyrus_communis	pycom05g32400 pycom10g28170
rosa_chinensis	RchiOBHm_Chr5g0001451
rosa_laevigata	RLG00000030929
rosa_multiflora	Rmu_co8403483.1_g000001 Rmu_sc0042889.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074940
rosa_rugosa	Rorug04G0390400
rosa_samantha	Rh5AG011200 Rh5BG013700 Rh5CG012200 Rh5DG011400
rosa_wichuraiana	Rw5G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	510
AccII	CGCG	1 cut(s)	219
AciI	CCGC	2 cut(s)	5, 508
AclWI	GGATC	3 cut(s)	43, 305, 620
AcsI	RAATTY	2 cut(s)	343, 695
AcuI	CTGAAG	2 cut(s)	220, 732
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	2 cut(s)	360, 518
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	724
AluBI	AGCT	3 cut(s)	106, 495, 716
AluI	AGCT	3 cut(s)	106, 495, 716
Alw21I	GWGCWC	1 cut(s)	482
Alw26I	GTCTC	3 cut(s)	30, 103, 560
AlwI	GGATC	3 cut(s)	43, 305, 620
AlwNI	CAGNNNCTG	1 cut(s)	39
AoxI	GGCC	1 cut(s)	684
ApeKI	GCWGC	2 cut(s)	413, 504
ApoI	RAATTY	2 cut(s)	343, 695
AspLEI	GCGC	3 cut(s)	114, 221, 298
AspS9I	GGNCC	2 cut(s)	70, 684
AsuHPI	GGTGA	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	482
BbvI	GCAGC	2 cut(s)	425, 516
BccI	CCATC	1 cut(s)	637
BceAI	ACGGC	1 cut(s)	42
BcoDI	GTCTC	3 cut(s)	30, 103, 560
BfaI	CTAG	1 cut(s)	20
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	4 cut(s)	6, 414, 505, 508
BlsI	GCNGC	4 cut(s)	7, 415, 506, 509
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	70, 684
BmrI	ACTGGG	1 cut(s)	49
BmsI	GCATC	2 cut(s)	591, 712
BmuI	ACTGGG	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	496
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	270
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse118I	RCCGGY	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	585
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	3 cut(s)	452, 605, 639
BseNI	ACTGG	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	425, 516
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	686
BsiHKAI	GWGCWC	1 cut(s)	482
BsiSI	CCGG	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	3 cut(s)	30, 103, 560
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	686
Bsp1286I	GDGCHC	2 cut(s)	172, 482
Bsp143I	GATC	6 cut(s)	10, 30, 48, 310, 354, 625
BspACI	CCGC	2 cut(s)	5, 508
BspANI	GGCC	1 cut(s)	686
BspCNI	CTCAG	3 cut(s)	451, 604, 640
BspFNI	CGCG	1 cut(s)	219
BspPI	GGATC	3 cut(s)	43, 305, 620
BsrBI	CCGCTC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	585
BsrFI	RCCGGY	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	6 cut(s)	10, 30, 48, 310, 354, 625
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	484
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	3 cut(s)	172, 183, 223
BstDEI	CTNAG	3 cut(s)	438, 591, 648
BstF5I	GGATG	1 cut(s)	589
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	3 cut(s)	114, 221, 298
BstKTI	GATC	6 cut(s)	13, 33, 51, 313, 357, 628
BstMAI	GTCTC	3 cut(s)	30, 103, 560
BstMBI	GATC	6 cut(s)	10, 30, 48, 310, 354, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	501, 601
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	425, 516
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	686
BtsCI	GGATG	1 cut(s)	589
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	3 cut(s)	172, 183, 223
CaiI	CAGNNNCTG	1 cut(s)	39
CfoI	GCGC	3 cut(s)	114, 221, 298
Cfr10I	RCCGGY	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	70, 684
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	359, 517
CviAII	CATG	6 cut(s)	67, 109, 319, 331, 381, 513
CviQI	GTAC	2 cut(s)	359, 517
DdeI	CTNAG	3 cut(s)	438, 591, 648
DpnI	GATC	6 cut(s)	12, 32, 50, 312, 356, 627
DpnII	GATC	6 cut(s)	10, 30, 48, 310, 354, 625
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	220, 732
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	6 cut(s)	70, 112, 322, 334, 384, 516
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	6 cut(s)	66, 108, 318, 330, 380, 512
Fnu4HI	GCNGC	4 cut(s)	6, 414, 505, 508
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	4 cut(s)	6, 414, 505, 508
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	3 cut(s)	113, 220, 297
GluI	GCNGC	4 cut(s)	6, 414, 505, 508
HaeIII	GGCC	1 cut(s)	686
HapII	CCGG	1 cut(s)	226
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	3 cut(s)	114, 221, 298
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	6 cut(s)	70, 112, 322, 334, 384, 516
Hin6I	GCGC	3 cut(s)	112, 219, 296
HinP1I	GCGC	3 cut(s)	112, 219, 296
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	4 cut(s)	81, 286, 367, 637
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	1 cut(s)	578
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	5 cut(s)	35, 48, 80, 310, 441
Hpy188III	TCNNGA	1 cut(s)	402
Hpy8I	GTNNAC	1 cut(s)	388
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	143, 646
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4V	TGCA	4 cut(s)	380, 460, 578, 604
HpyF10VI	GCNNNNNNNGC	2 cut(s)	501, 601
HpyF3I	CTNAG	3 cut(s)	438, 591, 648
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	6 cut(s)	70, 112, 322, 334, 384, 516
HspAI	GCGC	3 cut(s)	112, 219, 296
Kzo9I	GATC	6 cut(s)	10, 30, 48, 310, 354, 625
LmnI	GCTCC	1 cut(s)	119
Lsp1109I	GCAGC	2 cut(s)	425, 516
LweI	GCATC	2 cut(s)	591, 712
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	6 cut(s)	12, 32, 50, 312, 356, 627
MbiI	CCGCTC	1 cut(s)	510
MboI	GATC	6 cut(s)	10, 30, 48, 310, 354, 625
MboII	GAAGA	4 cut(s)	349, 388, 581, 736
MfeI	CAATTG	1 cut(s)	155
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	2 cut(s)	172, 482
MluCI	AATT	5 cut(s)	155, 175, 193, 343, 695
MlyI	GAGTC	3 cut(s)	90, 361, 646
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	8 cut(s)	63, 83, 95, 213, 238, 435, 441, 536
MslI	CAYNNNNRTG	2 cut(s)	323, 379
MspI	CCGG	1 cut(s)	226
MunI	CAATTG	1 cut(s)	155
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	501, 601
NdeII	GATC	6 cut(s)	10, 30, 48, 310, 354, 625
NlaIII	CATG	6 cut(s)	70, 112, 322, 334, 384, 516
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 178
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	4 cut(s)	7, 415, 506, 509
PleI	GAGTC	3 cut(s)	89, 361, 645
PpsI	GAGTC	3 cut(s)	89, 361, 645
PspPI	GGNCC	2 cut(s)	70, 684
PstNI	CAGNNNCTG	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	2 cut(s)	360, 518
RsaNI	GTAC	2 cut(s)	359, 517
RseI	CAYNNNNRTG	2 cut(s)	323, 379
SatI	GCNGC	4 cut(s)	6, 414, 505, 508
Sau3AI	GATC	6 cut(s)	10, 30, 48, 310, 354, 625
Sau96I	GGNCC	2 cut(s)	70, 684
SchI	GAGTC	3 cut(s)	90, 361, 646
SduI	GDGCHC	2 cut(s)	172, 482
SetI	ASST	7 cut(s)	108, 205, 446, 452, 497, 718, 740
SfaNI	GCATC	2 cut(s)	591, 712
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	2 cut(s)	323, 379
SmlI	CTYRAG	1 cut(s)	475
SmoI	CTYRAG	1 cut(s)	475
Sse9I	AATT	5 cut(s)	155, 175, 193, 343, 695
SsiI	CCGC	2 cut(s)	5, 508
SspMI	CTAG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	484
TaqI	TCGA	1 cut(s)	452
TasI	AATT	5 cut(s)	155, 175, 193, 343, 695
TauI	GCSGC	2 cut(s)	8, 510
TfiI	GAWTC	1 cut(s)	286
TscAI	CASTG	1 cut(s)	487
TseI	GCWGC	2 cut(s)	413, 504
TspDTI	ATGAA	2 cut(s)	187, 350
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	2 cut(s)	343, 695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.