Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008511

Physical Location & Seq

Genomic Coordinates Forward (+)

31808403 .. 31811148

Gene Structure 2746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCGGCAGATCTGGTGCTCGACACAGCCATCAGAGACTGGGTTCTCATCCCTCTCTCGGTGGTCATGGTCCTCATCGGCGTCCTCCGATACTTCGTCTCCAAGCTCATGCGCTCCAACCAAGTCCCCGATGCCAAAATCGTCAAAGAAGGGTATTACACTTGCTTACTATACTACATGGATCTGCAATTAATTATTAGGGCTCGGAATTTACGTGCTGCTGCTAATTTCATACCTCCAAAGTCGTTTCGTGCTCGCCGATTGTATTATAACAATGAGGAAAATGGGCTGTTAATTGTTCCTAAGGGTCAGGCACAGAATCCACAAGCGCAAATGTTCTCTGATCCCAACATGGCCATGGATATGATGAAGAAAAATCTGTCCATGATAATACCCCAGACTCTTACTTTTGCATGGGTCAATTTTTTCTTCTCTGGATTTGTTGCAGCCAAAATTCCCTTTCCTCTTACTCAAAGGTTCAGGTCTATGCTGCAGAATGGGATTGACTTGAGCACTGTTGATGTTAGCTACGTCAGTAGCCGCTCATGGTACTTTCTTAATCTGTTTGGATTAAGAGGTTTGTTCAGTCTCATTTTGGGAGAAGAAAATGCCATGGATGATACTCAGAAAATGATGCAAATGAGTGGCTTTGGCTTTGATCCATCAAAGAGTTTGGGAGCCGAGAAGGACAGCCTCGATATAGTCCAGCATGACTGGGCCTTACCAAAATTTGAGCATCGCGCTGAAGCAGTATTGAGAAAACGTGCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF106

Protein Analysis

258

Amino Acids

29.46

Weight (kDa)

9.49

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12590
fragaria_vesca	FvH4_3g00930 FvH4_3g00930 FvH4_3g00930 FvH4_3g00930 FvH4_3g00930
malus_domestica	MD05G1358200.v1.1 MD10G1332200.v1.1 MD10G1332300.v1.1
prunus_persica	Prupe.4G009900_v2.0.a1
pyrus_communis	pycom05g32400 pycom10g28170
rosa_chinensis	RchiOBHm_Chr5g0001451
rosa_laevigata	RLG00000030929
rosa_multiflora	Rmu_co8403483.1_g000001 Rmu_sc0042889.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074940
rosa_rugosa	Rorug04G0390400
rosa_samantha	Rh5AG011200 Rh5BG013700 Rh5CG012200 Rh5DG011400
rosa_wichuraiana	Rw5G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	270
AccBSI	CCGCTC	1 cut(s)	543
AccII	CGCG	1 cut(s)	741
AciI	CCGC	2 cut(s)	5, 541
AclWI	GGATC	3 cut(s)	189, 338, 653
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	3 cut(s)	208, 453, 728
AcuI	CTGAAG	1 cut(s)	765
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	1 cut(s)	58
AluBI	AGCT	2 cut(s)	106, 528
AluI	AGCT	2 cut(s)	106, 528
Alw21I	GWGCWC	3 cut(s)	21, 256, 515
Alw26I	GTCTC	3 cut(s)	30, 103, 593
AlwI	GGATC	3 cut(s)	189, 338, 653
AlwNI	CAGNNNCTG	1 cut(s)	39
AoxI	GGCC	2 cut(s)	354, 717
ApeKI	GCWGC	4 cut(s)	218, 221, 446, 490
ApoI	RAATTY	3 cut(s)	208, 453, 728
AseI	ATTAAT	1 cut(s)	191
AspLEI	GCGC	3 cut(s)	114, 331, 743
AspS9I	GGNCC	2 cut(s)	70, 717
AvaII	GGWCC	1 cut(s)	70
AxyI	CCTNAGG	1 cut(s)	303
BalI	TGGCCA	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	3 cut(s)	21, 256, 515
BbvI	GCAGC	4 cut(s)	205, 208, 458, 477
BccI	CCATC	2 cut(s)	38, 670
BcoDI	GTCTC	3 cut(s)	30, 103, 593
BfmI	CTRYAG	1 cut(s)	491
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	6 cut(s)	6, 219, 222, 447, 491, 541
BlsI	GCNGC	6 cut(s)	7, 220, 223, 448, 492, 542
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	70, 717
BmiI	GGNNCC	1 cut(s)	679
BmrI	ACTGGG	2 cut(s)	49, 724
BmsI	GCATC	3 cut(s)	121, 624, 745
BmuI	ACTGGG	2 cut(s)	49, 724
BpuEI	CTTGAG	1 cut(s)	529
BsaAI	YACGTR	1 cut(s)	215
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	357, 612
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	2 cut(s)	44, 719
Bse21I	CCTNAGG	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	357, 612
BseGI	GGATG	2 cut(s)	48, 622
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	2 cut(s)	44, 719
BseXI	GCAGC	4 cut(s)	205, 208, 458, 477
Bsh1236I	CGCG	1 cut(s)	741
BshFI	GGCC	2 cut(s)	356, 719
BsiHKAI	GWGCWC	3 cut(s)	21, 256, 515
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	3 cut(s)	30, 103, 593
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	2 cut(s)	356, 719
Bsp1286I	GDGCHC	4 cut(s)	21, 205, 256, 515
Bsp143I	GATC	4 cut(s)	10, 181, 343, 658
Bsp19I	CCATGG	2 cut(s)	357, 612
BspACI	CCGC	2 cut(s)	5, 541
BspANI	GGCC	2 cut(s)	356, 719
BspCNI	CTCAG	1 cut(s)	637
BspFNI	CGCG	1 cut(s)	741
BspLI	GGNNCC	1 cut(s)	679
BspMAI	CTGCAG	1 cut(s)	495
BspPI	GGATC	3 cut(s)	189, 338, 653
BsrBI	CCGCTC	1 cut(s)	543
BsrI	ACTGG	2 cut(s)	44, 719
BssECI	CCNNGG	2 cut(s)	357, 612
BssMI	GATC	4 cut(s)	10, 181, 343, 658
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	2 cut(s)	357, 612
Bst4CI	ACNGT	1 cut(s)	517
BstACI	GRCGYC	1 cut(s)	81
BstBAI	YACGTR	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	2 cut(s)	303, 624
BstDSI	CCRYGG	2 cut(s)	357, 612
BstF5I	GGATG	2 cut(s)	48, 622
BstFNI	CGCG	1 cut(s)	741
BstHHI	GCGC	3 cut(s)	114, 331, 743
BstKTI	GATC	4 cut(s)	13, 184, 346, 661
BstMAI	GTCTC	3 cut(s)	30, 103, 593
BstMBI	GATC	4 cut(s)	10, 181, 343, 658
BstSFI	CTRYAG	1 cut(s)	491
BstUI	CGCG	1 cut(s)	741
BstV1I	GCAGC	4 cut(s)	205, 208, 458, 477
BstX2I	RGATCY	2 cut(s)	10, 181
BstYI	RGATCY	2 cut(s)	10, 181
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	356, 719
BtgI	CCRYGG	2 cut(s)	357, 612
BtgZI	GCGATG	1 cut(s)	722
BtsCI	GGATG	2 cut(s)	48, 622
BtsIMutI	CAGTG	1 cut(s)	513
Cac8I	GCNNGC	1 cut(s)	256
CaiI	CAGNNNCTG	1 cut(s)	39
CfoI	GCGC	3 cut(s)	114, 331, 743
Cfr13I	GGNCC	2 cut(s)	70, 717
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	550
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	2 cut(s)	303, 624
DpnI	GATC	4 cut(s)	12, 183, 345, 660
DpnII	GATC	4 cut(s)	10, 181, 343, 658
EaeI	YGGCCR	1 cut(s)	354
Eco130I	CCWWGG	2 cut(s)	357, 612
Eco24I	GRGCYC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	765
Eco81I	CCTNAGG	1 cut(s)	303
EcoT14I	CCWWGG	2 cut(s)	357, 612
EcoT38I	GRGCYC	1 cut(s)	205
ErhI	CCWWGG	2 cut(s)	357, 612
Esp3I	CGTCTC	1 cut(s)	103
FaqI	GGGAC	1 cut(s)	110
Fnu4HI	GCNGC	6 cut(s)	6, 219, 222, 447, 491, 541
FokI	GGATG	2 cut(s)	35, 629
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	6 cut(s)	6, 219, 222, 447, 491, 541
GlaI	GCGC	3 cut(s)	113, 330, 742
GluI	GCNGC	6 cut(s)	6, 219, 222, 447, 491, 541
HaeIII	GGCC	2 cut(s)	356, 719
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	3 cut(s)	114, 331, 743
Hin1I	GRCGYC	1 cut(s)	81
Hin6I	GCGC	3 cut(s)	112, 329, 741
HinP1I	GCGC	3 cut(s)	112, 329, 741
HinfI	GANTC	2 cut(s)	319, 400
Hpy188I	TCNGA	5 cut(s)	35, 89, 207, 343, 627
Hpy188III	TCNNGA	1 cut(s)	435
HpyAV	CCTTC	2 cut(s)	143, 679
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	3 cut(s)	214, 531, 763
HpyCH4V	TGCA	5 cut(s)	187, 413, 446, 493, 637
HpyF3I	CTNAG	2 cut(s)	303, 624
HpySE526I	ACGT	3 cut(s)	214, 531, 763
Hsp92I	GRCGYC	1 cut(s)	81
HspAI	GCGC	3 cut(s)	112, 329, 741
Kzo9I	GATC	4 cut(s)	10, 181, 343, 658
LmnI	GCTCC	2 cut(s)	119, 677
LpnPI	CCDG	7 cut(s)	25, 296, 410, 420, 466, 700, 719
Lsp1109I	GCAGC	4 cut(s)	205, 208, 458, 477
LweI	GCATC	3 cut(s)	121, 624, 745
MaeII	ACGT	3 cut(s)	214, 531, 763
MalI	GATC	4 cut(s)	12, 183, 345, 660
MbiI	CCGCTC	1 cut(s)	543
MboI	GATC	4 cut(s)	10, 181, 343, 658
MboII	GAAGA	3 cut(s)	382, 421, 614
MflI	RGATCY	2 cut(s)	10, 181
MhlI	GDGCHC	4 cut(s)	21, 205, 256, 515
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	8 cut(s)	188, 192, 208, 226, 294, 421, 453, 728
MluNI	TGGCCA	1 cut(s)	356
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	8 cut(s)	63, 83, 95, 246, 271, 474, 569, 704
Mox20I	TGGCCA	1 cut(s)	356
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	4 cut(s)	191, 293, 558, 572
MslI	CAYNNNNRTG	2 cut(s)	356, 362
Msp20I	TGGCCA	1 cut(s)	356
MvnI	CGCG	1 cut(s)	741
NcoI	CCATGG	2 cut(s)	357, 612
NdeII	GATC	4 cut(s)	10, 181, 343, 658
NlaIV	GGNNCC	1 cut(s)	679
NmeAIII	GCCGAG	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	2 cut(s)	211, 256
PfeI	GAWTC	1 cut(s)	319
PkrI	GCNGC	6 cut(s)	7, 220, 223, 448, 492, 542
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
Ppu21I	YACGTR	1 cut(s)	215
PshBI	ATTAAT	1 cut(s)	191
PsiI	TTATAA	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	679
PspPI	GGNCC	2 cut(s)	70, 717
PstI	CTGCAG	1 cut(s)	495
PstNI	CAGNNNCTG	1 cut(s)	39
PsuI	RGATCY	2 cut(s)	10, 181
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
RseI	CAYNNNNRTG	2 cut(s)	356, 362
SaqAI	TTAA	4 cut(s)	191, 293, 558, 572
SatI	GCNGC	6 cut(s)	6, 219, 222, 447, 491, 541
Sau3AI	GATC	4 cut(s)	10, 181, 343, 658
Sau96I	GGNCC	2 cut(s)	70, 717
SchI	GAGTC	1 cut(s)	394
SduI	GDGCHC	4 cut(s)	21, 205, 256, 515
SetI	ASST	9 cut(s)	108, 217, 238, 479, 485, 530, 534, 580, 766
SfaNI	GCATC	3 cut(s)	121, 624, 745
SfcI	CTRYAG	1 cut(s)	491
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	2 cut(s)	356, 362
SmlI	CTYRAG	1 cut(s)	508
SmoI	CTYRAG	1 cut(s)	508
Sse9I	AATT	8 cut(s)	188, 192, 208, 226, 294, 421, 453, 728
SsiI	CCGC	2 cut(s)	5, 541
StyI	CCWWGG	2 cut(s)	357, 612
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	3 cut(s)	217, 534, 766
TaqI	TCGA	2 cut(s)	21, 696
TasI	AATT	8 cut(s)	188, 192, 208, 226, 294, 421, 453, 728
TauI	GCSGC	2 cut(s)	8, 543
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	4 cut(s)	191, 293, 558, 572
Tru9I	TTAA	4 cut(s)	191, 293, 558, 572
TscAI	CASTG	1 cut(s)	520
TseI	GCWGC	4 cut(s)	218, 221, 446, 490
TspDTI	ATGAA	2 cut(s)	220, 383
TspRI	CASTG	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	70
VspI	ATTAAT	1 cut(s)	191
XapI	RAATTY	3 cut(s)	208, 453, 728
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.