Rmu_sc0042889.1_g000001

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042889.1
OG0008511
Physical Location & Seq
Reverse (-)
2 .. 834
833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042889.1_g000001.1.cds

Sequence Viewer

Length: 319 bp
atggcggcagatctggtgctagacactgcgatcagagactgggttctgatccctctctcggtcgtcatggtcctcatcggagtcctccgatacttcgtctccaagctcatgcgctccagccaagtccccgatgccaaaatcgtcaaagaagggcaattggttattagggctcggaatttgcgtgcttctgctaatttcatacctcccaagtcgtttcgtgctcgccgattttacttcagcaacgaggaaaatgggttgttatttgttcctaagggtcaggcacagaatccacaggcgcagatgttctctgatcccaaca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF106

Protein Analysis

106

Amino Acids

11.98

Weight (kDa)

10.34

Isoelectric Point (pI)

29.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 43, 305
AcsI RAATTY 1 cut(s) 175
AcuI CTGAAG 1 cut(s) 220
AfiI CCNNNNNNNGG 1 cut(s) 58
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 2 cut(s) 30, 103
AlwI GGATC 2 cut(s) 43, 305
AlwNI CAGNNNCTG 1 cut(s) 39
ApoI RAATTY 1 cut(s) 175
AspLEI GCGC 2 cut(s) 114, 298
AspS9I GGNCC 1 cut(s) 70
AvaII GGWCC 1 cut(s) 70
AxyI CCTNAGG 1 cut(s) 270
BanII GRGCYC 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 223
BcoDI GTCTC 2 cut(s) 30, 103
BfaI CTAG 1 cut(s) 20
BglII AGATCT 1 cut(s) 10
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmrI ACTGGG 1 cut(s) 49
BmsI GCATC 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 49
BpmI CTGGAG 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 44
Bse21I CCTNAGG 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 44
Bsh1285I CGRYCG 1 cut(s) 63
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 223
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 2 cut(s) 30, 103
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 172, 223
Bsp143I GATC 4 cut(s) 10, 30, 48, 310
BspACI CCGC 1 cut(s) 5
BspPI GGATC 2 cut(s) 43, 305
BsrI ACTGG 1 cut(s) 44
BssMI GATC 4 cut(s) 10, 30, 48, 310
BstC8I GCNNGC 2 cut(s) 183, 223
BstDEI CTNAG 1 cut(s) 270
BstHHI GCGC 2 cut(s) 114, 298
BstKTI GATC 4 cut(s) 13, 33, 51, 313
BstMAI GTCTC 2 cut(s) 30, 103
BstMBI GATC 4 cut(s) 10, 30, 48, 310
BstMCI CGRYCG 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
Bsu36I CCTNAGG 1 cut(s) 270
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 2 cut(s) 183, 223
CaiI CAGNNNCTG 1 cut(s) 39
CfoI GCGC 2 cut(s) 114, 298
Cfr13I GGNCC 1 cut(s) 70
CviAII CATG 2 cut(s) 67, 109
CviJI RGCY 3 cut(s) 106, 120, 170
CviKI_1 RGCY 3 cut(s) 106, 120, 170
DdeI CTNAG 1 cut(s) 270
DpnI GATC 4 cut(s) 12, 32, 50, 312
DpnII GATC 4 cut(s) 10, 30, 48, 310
Eco24I GRGCYC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 220
Eco81I CCTNAGG 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 172
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 2 cut(s) 70, 112
FaiI YATR 3 cut(s) 68, 110, 200
FaqI GGGAC 1 cut(s) 110
FatI CATG 2 cut(s) 66, 108
Fnu4HI GCNGC 1 cut(s) 6
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 20
GlaI GCGC 2 cut(s) 113, 297
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 100
HhaI GCGC 2 cut(s) 114, 298
Hin1II CATG 2 cut(s) 70, 112
Hin6I GCGC 2 cut(s) 112, 296
HinP1I GCGC 2 cut(s) 112, 296
HinfI GANTC 2 cut(s) 81, 286
Hpy188I TCNGA 6 cut(s) 35, 48, 80, 89, 174, 310
HpyAV CCTTC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 270
Hsp92II CATG 2 cut(s) 70, 112
HspAI GCGC 2 cut(s) 112, 296
Kzo9I GATC 4 cut(s) 10, 30, 48, 310
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 4 cut(s) 25, 130, 263, 278
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 20
MalI GATC 4 cut(s) 12, 32, 50, 312
MboI GATC 4 cut(s) 10, 30, 48, 310
MfeI CAATTG 1 cut(s) 155
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 2 cut(s) 172, 223
MluCI AATT 3 cut(s) 155, 175, 193
MlyI GAGTC 1 cut(s) 90
MnlI CCTC 5 cut(s) 63, 83, 95, 213, 238
MunI CAATTG 1 cut(s) 155
NdeII GATC 4 cut(s) 10, 30, 48, 310
NlaIII CATG 2 cut(s) 70, 112
PcsI WCGNNNNNNNCGW 2 cut(s) 178, 223
PfeI GAWTC 1 cut(s) 286
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 39
PsuI RGATCY 1 cut(s) 10
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 4 cut(s) 10, 30, 48, 310
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 90
SduI GDGCHC 2 cut(s) 172, 223
SetI ASST 2 cut(s) 108, 205
SfaNI GCATC 1 cut(s) 121
SinI GGWCC 1 cut(s) 70
Sse9I AATT 3 cut(s) 155, 175, 193
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 20
TaqII GACCGA 1 cut(s) 49
TasI AATT 3 cut(s) 155, 175, 193
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 286
TscAI CASTG 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 187
TspRI CASTG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 1 cut(s) 175
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.