Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008511

Physical Location & Seq

Genomic Coordinates Forward (+)

28862994 .. 28865964

Gene Structure 2971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28170.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGATTGGCTTGGGCCTTTTACTCTGTCTTCATTGGGACACGGATATCCCCTCTGCGTTTGGTCTTTTCACATTCGCATTCCTGGACCGACTGAAAGACAAACACCGTGTAGTGAAAATCCAATCGATAAGGAGGCGAGGCAGAGCAGAACAGAGAGAGATATACCCAAAGCGCAACCAAAGACTGTCGTTTAGCTCTGATTCTTTGACTGCCCGCGAAGCTCCAACAATGGCGGCAGATCTGGTACTTGACACAGCCATCAGAGACTGGGTTCTCATCCCTCTCTCGGTGGTCATGGTTCTCATCGGCGTCCTCCGATACTTCGTCTCCAAGCTCATGCGATCCAACCAAGTCCCCGATGCCAAAATTGTCAAAGAAGGGGCTCGGAACTTACGTGCTGCTGCTAATTTCATACCTCCAAAGTCGTTTCGTGCTCGCCGATTGTATTACAACAACGAGGAAAATGGGTTGTTAATTGTTCCTAAGGGTCAGGCACAGAATCCACAAGCGCAAATGTTCTCTGATCCCAACATGGCCATGGATATGATGAAGAAAAATCTGTCCATGATAATACCCCAGACTCTTACTTTTGCATGGGTCAACTTTTTCTTCTCTGGATTTGTAGCAGCCAAAATTCCCTTTCCTCTTACTCAAAGGTTCAGGTCTATGCTTCAGAATGGGATTGACTTGAGCACTGTTGATGTTAGCTACGTCAGTAGCCGCTCATGGTACTTTCTTAATCTGTTTGGATTAAGGGGTTTGTTTAGTCTCATTCTGGGAGAAGAAAATGCCATGGACGATACTCAGAAAATGATGCAAATGAGTGGCTTTGGATTTGATCCATCAAAGAGCTTGGGAGCTGAGAAGGACAGTCTTGATATAGTCCAGCATGACTGGGCCTTACCAAAATTTGAGCATCGCGCCGAAGCAGTATTGAGAGAACTTGCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF106

Protein Analysis

318

Amino Acids

36.18

Weight (kDa)

9.76

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12590
fragaria_vesca	FvH4_3g00930 FvH4_3g00930 FvH4_3g00930 FvH4_3g00930 FvH4_3g00930
malus_domestica	MD05G1358200.v1.1 MD10G1332200.v1.1 MD10G1332300.v1.1
prunus_persica	Prupe.4G009900_v2.0.a1
pyrus_communis	pycom05g32400 pycom10g28170
rosa_chinensis	RchiOBHm_Chr5g0001451
rosa_laevigata	RLG00000030929
rosa_multiflora	Rmu_co8403483.1_g000001 Rmu_sc0042889.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074940
rosa_rugosa	Rorug04G0390400
rosa_samantha	Rh5AG011200 Rh5BG013700 Rh5CG012200 Rh5DG011400
rosa_wichuraiana	Rw5G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	723
AccII	CGCG	2 cut(s)	216, 921
AciI	CCGC	3 cut(s)	214, 233, 721
AclWI	GGATC	3 cut(s)	336, 518, 833
AcoI	YGGCCR	1 cut(s)	534
AcsI	RAATTY	2 cut(s)	633, 908
AcuI	CTGAAG	1 cut(s)	656
AcyI	GRCGYC	1 cut(s)	309
AfaI	GTAC	2 cut(s)	246, 731
AfiI	CCNNNNNNNGG	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	6 cut(s)	195, 221, 334, 708, 852, 860
AluI	AGCT	6 cut(s)	195, 221, 334, 708, 852, 860
Alw21I	GWGCWC	2 cut(s)	436, 695
Alw26I	GTCTC	3 cut(s)	258, 331, 773
AlwI	GGATC	3 cut(s)	336, 518, 833
AlwNI	CAGNNNCTG	1 cut(s)	267
AoxI	GGCC	3 cut(s)	13, 534, 897
ApeKI	GCWGC	3 cut(s)	398, 401, 626
ApoI	RAATTY	2 cut(s)	633, 908
AspLEI	GCGC	3 cut(s)	174, 511, 923
AspS9I	GGNCC	3 cut(s)	13, 85, 897
AvaII	GGWCC	1 cut(s)	85
AxyI	CCTNAGG	1 cut(s)	483
BalI	TGGCCA	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	2 cut(s)	436, 695
BbvI	GCAGC	3 cut(s)	385, 388, 638
BccI	CCATC	2 cut(s)	266, 850
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	3 cut(s)	258, 331, 773
BglII	AGATCT	1 cut(s)	238
BisI	GCNGC	5 cut(s)	234, 399, 402, 627, 721
BlsI	GCNGC	5 cut(s)	235, 400, 403, 628, 722
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	3 cut(s)	13, 85, 897
BmrFI	CCNGG	1 cut(s)	83
BmrI	ACTGGG	2 cut(s)	277, 904
BmsI	GCATC	3 cut(s)	349, 804, 925
BmuI	ACTGGG	2 cut(s)	277, 904
BpiI	GAAGAC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	709
Bsa29I	ATCGAT	1 cut(s)	125
BsaAI	YACGTR	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	309
BsaJI	CCNNGG	2 cut(s)	537, 792
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse1I	ACTGG	2 cut(s)	272, 899
Bse21I	CCTNAGG	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	83
BseCI	ATCGAT	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	537, 792
BseGI	GGATG	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMII	CTCAG	2 cut(s)	818, 852
BseNI	ACTGG	2 cut(s)	272, 899
BseXI	GCAGC	3 cut(s)	385, 388, 638
Bsh1236I	CGCG	2 cut(s)	216, 921
BshFI	GGCC	3 cut(s)	15, 536, 899
BshVI	ATCGAT	1 cut(s)	125
BsiHKAI	GWGCWC	2 cut(s)	436, 695
BslFI	GGGAC	2 cut(s)	50, 338
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	3 cut(s)	258, 331, 773
BsmBI	CGTCTC	1 cut(s)	331
BsmFI	GGGAC	2 cut(s)	50, 338
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	3 cut(s)	15, 536, 899
Bsp1286I	GDGCHC	3 cut(s)	385, 436, 695
Bsp143I	GATC	4 cut(s)	238, 341, 523, 838
Bsp19I	CCATGG	2 cut(s)	537, 792
BspACI	CCGC	3 cut(s)	214, 233, 721
BspANI	GGCC	3 cut(s)	15, 536, 899
BspCNI	CTCAG	2 cut(s)	817, 853
BspDI	ATCGAT	1 cut(s)	125
BspFNI	CGCG	2 cut(s)	216, 921
BspPI	GGATC	3 cut(s)	336, 518, 833
BsrBI	CCGCTC	1 cut(s)	723
BsrI	ACTGG	2 cut(s)	272, 899
BssECI	CCNNGG	2 cut(s)	537, 792
BssMI	GATC	4 cut(s)	238, 341, 523, 838
BssNI	GRCGYC	1 cut(s)	309
BssT1I	CCWWGG	2 cut(s)	537, 792
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	4 cut(s)	107, 186, 697, 872
BstACI	GRCGYC	1 cut(s)	309
BstBAI	YACGTR	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	214, 436
BstDEI	CTNAG	3 cut(s)	483, 804, 861
BstDSI	CCRYGG	2 cut(s)	537, 792
BstF5I	GGATG	1 cut(s)	276
BstFNI	CGCG	2 cut(s)	216, 921
BstHHI	GCGC	3 cut(s)	174, 511, 923
BstKTI	GATC	4 cut(s)	241, 344, 526, 841
BstMAI	GTCTC	3 cut(s)	258, 331, 773
BstMBI	GATC	4 cut(s)	238, 341, 523, 838
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BstUI	CGCG	2 cut(s)	216, 921
BstV1I	GCAGC	3 cut(s)	385, 388, 638
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	125
Bsu36I	CCTNAGG	1 cut(s)	483
BsuRI	GGCC	3 cut(s)	15, 536, 899
BsuTUI	ATCGAT	1 cut(s)	125
BtgI	CCRYGG	2 cut(s)	537, 792
BtgZI	GCGATG	1 cut(s)	902
BtsCI	GGATG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	693
Cac8I	GCNNGC	2 cut(s)	214, 436
CaiI	CAGNNNCTG	1 cut(s)	267
CfoI	GCGC	3 cut(s)	174, 511, 923
Cfr13I	GGNCC	3 cut(s)	13, 85, 897
ClaI	ATCGAT	1 cut(s)	125
CseI	GACGC	1 cut(s)	298
Csp6I	GTAC	2 cut(s)	245, 730
CviAII	CATG	9 cut(s)	295, 337, 532, 538, 565, 594, 726, 793, 890
CviQI	GTAC	2 cut(s)	245, 730
DdeI	CTNAG	3 cut(s)	483, 804, 861
DpnI	GATC	4 cut(s)	240, 343, 525, 840
DpnII	GATC	4 cut(s)	238, 341, 523, 838
EaeI	YGGCCR	1 cut(s)	534
Eco130I	CCWWGG	2 cut(s)	537, 792
Eco24I	GRGCYC	1 cut(s)	385
Eco32I	GATATC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	656
Eco81I	CCTNAGG	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	81
EcoRV	GATATC	1 cut(s)	46
EcoT14I	CCWWGG	2 cut(s)	537, 792
EcoT38I	GRGCYC	1 cut(s)	385
ErhI	CCWWGG	2 cut(s)	537, 792
Esp3I	CGTCTC	1 cut(s)	331
FaeI	CATG	9 cut(s)	298, 340, 535, 541, 568, 597, 729, 796, 893
FaqI	GGGAC	2 cut(s)	50, 338
FatI	CATG	9 cut(s)	294, 336, 531, 537, 564, 593, 725, 792, 889
FauI	CCCGC	1 cut(s)	221
Fnu4HI	GCNGC	5 cut(s)	234, 399, 402, 627, 721
FokI	GGATG	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	385
Fsp4HI	GCNGC	5 cut(s)	234, 399, 402, 627, 721
GlaI	GCGC	3 cut(s)	173, 510, 922
GluI	GCNGC	5 cut(s)	234, 399, 402, 627, 721
HaeIII	GGCC	3 cut(s)	15, 536, 899
HgaI	GACGC	1 cut(s)	298
HhaI	GCGC	3 cut(s)	174, 511, 923
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	9 cut(s)	298, 340, 535, 541, 568, 597, 729, 796, 893
Hin6I	GCGC	3 cut(s)	172, 509, 921
HinP1I	GCGC	3 cut(s)	172, 509, 921
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HinfI	GANTC	3 cut(s)	200, 499, 580
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188I	TCNGA	7 cut(s)	199, 263, 317, 387, 523, 675, 807
Hpy188III	TCNNGA	2 cut(s)	615, 875
Hpy8I	GTNNAC	1 cut(s)	601
HpyAV	CCTTC	2 cut(s)	371, 859
HpyCH4III	ACNGT	4 cut(s)	107, 186, 697, 872
HpyCH4IV	ACGT	2 cut(s)	394, 711
HpyCH4V	TGCA	2 cut(s)	593, 817
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	3 cut(s)	483, 804, 861
HpySE526I	ACGT	2 cut(s)	394, 711
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	9 cut(s)	298, 340, 535, 541, 568, 597, 729, 796, 893
HspAI	GCGC	3 cut(s)	172, 509, 921
Kzo9I	GATC	4 cut(s)	238, 341, 523, 838
LmnI	GCTCC	2 cut(s)	226, 857
Lsp1109I	GCAGC	3 cut(s)	385, 388, 638
LweI	GCATC	3 cut(s)	349, 804, 925
MaeII	ACGT	2 cut(s)	394, 711
MalI	GATC	4 cut(s)	240, 343, 525, 840
MbiI	CCGCTC	1 cut(s)	723
MboI	GATC	4 cut(s)	238, 341, 523, 838
MboII	GAAGA	4 cut(s)	20, 562, 601, 794
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	3 cut(s)	385, 436, 695
MlsI	TGGCCA	1 cut(s)	536
MluCI	AATT	5 cut(s)	366, 406, 474, 633, 908
MluNI	TGGCCA	1 cut(s)	536
MlyI	GAGTC	1 cut(s)	574
MmeI	TCCRAC	2 cut(s)	248, 369
MnlI	CCTC	8 cut(s)	61, 126, 131, 291, 323, 426, 451, 654
Mox20I	TGGCCA	1 cut(s)	536
MscI	TGGCCA	1 cut(s)	536
MseI	TTAA	3 cut(s)	473, 738, 752
MslI	CAYNNNNRTG	2 cut(s)	536, 542
Msp20I	TGGCCA	1 cut(s)	536
MspR9I	CCNGG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	2 cut(s)	216, 921
MwoI	GCNNNNNNNGC	1 cut(s)	218
NcoI	CCATGG	2 cut(s)	537, 792
NdeII	GATC	4 cut(s)	238, 341, 523, 838
NlaIII	CATG	9 cut(s)	298, 340, 535, 541, 568, 597, 729, 796, 893
PcsI	WCGNNNNNNNCGW	2 cut(s)	391, 436
PctI	GAATGC	1 cut(s)	77
PfeI	GAWTC	2 cut(s)	200, 499
PfoI	TCCNGGA	1 cut(s)	81
PkrI	GCNGC	5 cut(s)	235, 400, 403, 628, 722
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
Ppu21I	YACGTR	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspPI	GGNCC	3 cut(s)	13, 85, 897
PstNI	CAGNNNCTG	1 cut(s)	267
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	2 cut(s)	246, 731
RsaNI	GTAC	2 cut(s)	245, 730
RseI	CAYNNNNRTG	2 cut(s)	536, 542
SaqAI	TTAA	3 cut(s)	473, 738, 752
SatI	GCNGC	5 cut(s)	234, 399, 402, 627, 721
Sau3AI	GATC	4 cut(s)	238, 341, 523, 838
Sau96I	GGNCC	3 cut(s)	13, 85, 897
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	3 cut(s)	385, 436, 695
SfaNI	GCATC	3 cut(s)	349, 804, 925
SinI	GGWCC	1 cut(s)	85
SmiMI	CAYNNNNRTG	2 cut(s)	536, 542
SmlI	CTYRAG	1 cut(s)	688
SmoI	CTYRAG	1 cut(s)	688
Sse9I	AATT	5 cut(s)	366, 406, 474, 633, 908
SsiI	CCGC	3 cut(s)	214, 233, 721
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	537, 792
TaaI	ACNGT	4 cut(s)	107, 186, 697, 872
TaiI	ACGT	2 cut(s)	397, 714
TaqI	TCGA	1 cut(s)	125
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	5 cut(s)	366, 406, 474, 633, 908
TauI	GCSGC	2 cut(s)	236, 723
TfiI	GAWTC	2 cut(s)	200, 499
Tru1I	TTAA	3 cut(s)	473, 738, 752
Tru9I	TTAA	3 cut(s)	473, 738, 752
TscAI	CASTG	1 cut(s)	700
TseI	GCWGC	3 cut(s)	398, 401, 626
TspDTI	ATGAA	3 cut(s)	20, 400, 563
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	700
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	2 cut(s)	633, 908
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.