Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8403483.1

Orthogroup ID

OG0008511

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1272

Gene Structure 1272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8403483.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 502 bp

ttgccaggaaaatgggttgttatttgttcctaagggtcaggcacagaatccacaggcgcagatgttctctgatcccaacatggctatggacatgatgaagaaaaatttgtctatgatcataccccagactcttacatttgcgtgggtcaactttttcttttctggatttgtagcagccaaaataccttttcctcttactcagaggttcaggtcaatgttgcagaatgggattgacttgagcactgttgatgtcagctatgtcagtagccgctcatggtactttctcaatctgttcggattgagaggcttgttcagtctcattctgggagaagaaaatgccatggatgatactcagcgtatgatgcaaatgagtgggttcggcatggatccatcaaagagtttgggtgctgagaaggacagtcttgatataatccagcacgattgggccttaccaaaatttgagcatcgtgcggaagttgtattgaagaaacttgtccggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF106

Protein Analysis

166

Amino Acids

18.91

Weight (kDa)

6.94

Isoelectric Point (pI)

25.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12590
fragaria_vesca	FvH4_3g00930 FvH4_3g00930 FvH4_3g00930 FvH4_3g00930 FvH4_3g00930
malus_domestica	MD05G1358200.v1.1 MD10G1332200.v1.1 MD10G1332300.v1.1
prunus_persica	Prupe.4G009900_v2.0.a1
pyrus_communis	pycom05g32400 pycom10g28170
rosa_chinensis	RchiOBHm_Chr5g0001451
rosa_laevigata	RLG00000030929
rosa_multiflora	Rmu_co8403483.1_g000001 Rmu_sc0042889.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074940
rosa_rugosa	Rorug04G0390400
rosa_samantha	Rh5AG011200 Rh5BG013700 Rh5CG012200 Rh5DG011400
rosa_wichuraiana	Rw5G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	271
AciI	CCGC	2 cut(s)	269, 471
AclWI	GGATC	3 cut(s)	66, 381, 394
AcsI	RAATTY	2 cut(s)	104, 456
AfaI	GTAC	1 cut(s)	279
AgsI	TTSAA	1 cut(s)	485
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	3 cut(s)	66, 381, 394
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	1 cut(s)	174
ApoI	RAATTY	2 cut(s)	104, 456
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	445
AxyI	CCTNAGG	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	1 cut(s)	398
BciT130I	CCWGG	1 cut(s)	6
BclI	TGATCA	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	321
BisI	GCNGC	2 cut(s)	175, 269
BlsI	GCNGC	2 cut(s)	176, 270
Bme1390I	CCNGG	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	1 cut(s)	388
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	2 cut(s)	352, 473
BpuEI	CTTGAG	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	340
BsaWI	WCCGGW	1 cut(s)	496
Bse21I	CCTNAGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	350
BseMII	CTCAG	3 cut(s)	213, 366, 400
BseXI	GCAGC	1 cut(s)	186
BshFI	GGCC	1 cut(s)	447
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	3 cut(s)	71, 115, 386
Bsp19I	CCATGG	1 cut(s)	340
BspACI	CCGC	2 cut(s)	269, 471
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	3 cut(s)	212, 365, 401
BspLI	GGNNCC	1 cut(s)	388
BspPI	GGATC	3 cut(s)	66, 381, 394
BsrBI	CCGCTC	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	3 cut(s)	71, 115, 386
BssT1I	CCWWGG	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	245, 420
BstDEI	CTNAG	4 cut(s)	31, 199, 352, 409
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	3 cut(s)	74, 118, 389
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	3 cut(s)	71, 115, 386
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	1 cut(s)	4
BstV1I	GCAGC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	386
BstXI	CCANNNNNNTGG	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	386
Bsu36I	CCTNAGG	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	447
BtgI	CCRYGG	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	350
BtsIMutI	CAGTG	1 cut(s)	241
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	445
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	5 cut(s)	80, 92, 274, 341, 383
CviJI	RGCY	6 cut(s)	84, 177, 256, 268, 307, 447
CviKI_1	RGCY	6 cut(s)	84, 177, 256, 268, 307, 447
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	4 cut(s)	31, 199, 352, 409
DpnI	GATC	3 cut(s)	73, 117, 388
DpnII	GATC	3 cut(s)	71, 115, 386
Eco130I	CCWWGG	1 cut(s)	340
Eco81I	CCTNAGG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	5 cut(s)	83, 95, 277, 344, 386
FatI	CATG	5 cut(s)	79, 91, 273, 340, 382
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	175, 269
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	2 cut(s)	175, 269
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	2 cut(s)	175, 269
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	1 cut(s)	497
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	5 cut(s)	83, 95, 277, 344, 386
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	149
HindII	GTYRAC	1 cut(s)	149
HinfI	GANTC	2 cut(s)	47, 128
HpaII	CCGG	1 cut(s)	497
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	3 cut(s)	71, 202, 297
Hpy188III	TCNNGA	2 cut(s)	163, 423
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	407
HpyCH4III	ACNGT	2 cut(s)	245, 420
HpyCH4V	TGCA	2 cut(s)	221, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	4 cut(s)	31, 199, 352, 409
Hsp92II	CATG	5 cut(s)	83, 95, 277, 344, 386
HspAI	GCGC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	71, 115, 386
LpnPI	CCDG	8 cut(s)	18, 24, 39, 138, 148, 194, 309, 447
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	2 cut(s)	352, 473
MalI	GATC	3 cut(s)	73, 117, 388
MbiI	CCGCTC	1 cut(s)	271
MboI	GATC	3 cut(s)	71, 115, 386
MboII	GAAGA	3 cut(s)	110, 342, 497
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	2 cut(s)	104, 456
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	3 cut(s)	196, 202, 297
MslI	CAYNNNNRTG	2 cut(s)	84, 140
MspI	CCGG	1 cut(s)	497
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	362
NcoI	CCATGG	1 cut(s)	340
NdeII	GATC	3 cut(s)	71, 115, 386
NlaIII	CATG	5 cut(s)	83, 95, 277, 344, 386
NlaIV	GGNNCC	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	176, 270
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	388
PspPI	GGNCC	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	386
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
RseI	CAYNNNNRTG	2 cut(s)	84, 140
SatI	GCNGC	2 cut(s)	175, 269
Sau3AI	GATC	3 cut(s)	71, 115, 386
Sau96I	GGNCC	1 cut(s)	445
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	4 cut(s)	188, 207, 213, 258
SfaNI	GCATC	2 cut(s)	352, 473
SmiMI	CAYNNNNRTG	2 cut(s)	84, 140
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	2 cut(s)	104, 456
SsiI	CCGC	2 cut(s)	269, 471
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	2 cut(s)	245, 420
TasI	AATT	2 cut(s)	104, 456
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	1 cut(s)	47
TscAI	CASTG	1 cut(s)	248
TseI	GCWGC	1 cut(s)	174
TspDTI	ATGAA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	248
XapI	RAATTY	2 cut(s)	104, 456
XcmI	CCANNNNNNNNNTGG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.