Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008511

Physical Location & Seq

Genomic Coordinates Reverse (-)

488662 .. 492394

Gene Structure 3733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G009900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCGGCAGATCTGGTGCTAGACACAGCCATCAGAGATTGGGTTCTCATCCCTCTCTCGGTGGTCATGGTTCTCATAGGTGTCCTCCGATACTTCGTCTCCAAGCTCATGCGCTCCAACCAAGTCCCCGATGCAAAAATCATCAAAGAAGGGCAATTGATTATTAGGGCTCGGAATTTACGTGCTGCTGCTAATTTCATACCTCCCAAGTCGTTTCGCGCTCGCCGGTTTTATTTCAGCAATGAGGAAAATGGGTTGTTAATTGTTCCCAAGGGTCAGGTACAGAATGCACAAGCGCAAATGTTCTCTGATCCCAACATGGCTATGGACATGATGAAGAAAAATCTGTCTATGATCATACCCCAGACTCTTACTTTTGCATGGGTCAACTTTTTCTTTTCTGGATTTGTAGCAGCCAAAATACCCTTTCCTCTTACTCAAAGGTTCAGGTCAATGCTGCAGAATGGGATTGACTTAAGCACTGTTGATGTTAGCTATGTCAGTAGCCGCTCATGGTACTTTCTTAATCTGTTTGGATTAAGAGGTTTGTTTAGTCTCATTCTGGGAGAAGAAAATGCAATGGATGATACTCAGCGTATGATGCAAATGAGTGGGTTTGGTTTTGATCCATCAAAGAGCTTGGGCGCTGAGAAGGACAGTCTTGACATAGTCCAGCATGATTGGGCCTTACCAAAATTTGAGCACCGTGCTGAAGCAGTGTTGAAGAAACTTGCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF106

Protein Analysis

247

Amino Acids

27.94

Weight (kDa)

9.61

Isoelectric Point (pI)

24.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12590
fragaria_vesca	FvH4_3g00930 FvH4_3g00930 FvH4_3g00930 FvH4_3g00930 FvH4_3g00930
malus_domestica	MD05G1358200.v1.1 MD10G1332200.v1.1 MD10G1332300.v1.1
prunus_persica	Prupe.4G009900_v2.0.a1
pyrus_communis	pycom05g32400 pycom10g28170
rosa_chinensis	RchiOBHm_Chr5g0001451
rosa_laevigata	RLG00000030929
rosa_multiflora	Rmu_co8403483.1_g000001 Rmu_sc0042889.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074940
rosa_rugosa	Rorug04G0390400
rosa_samantha	Rh5AG011200 Rh5BG013700 Rh5CG012200 Rh5DG011400
rosa_wichuraiana	Rw5G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	510
AccII	CGCG	1 cut(s)	219
AciI	CCGC	2 cut(s)	5, 508
AclWI	GGATC	2 cut(s)	305, 620
AcsI	RAATTY	2 cut(s)	175, 695
AcuI	CTGAAG	1 cut(s)	732
AfaI	GTAC	2 cut(s)	282, 518
AfiI	CCNNNNNNNGG	1 cut(s)	58
AflII	CTTAAG	1 cut(s)	475
AgsI	TTSAA	1 cut(s)	724
AluBI	AGCT	3 cut(s)	106, 495, 639
AluI	AGCT	3 cut(s)	106, 495, 639
Alw21I	GWGCWC	1 cut(s)	705
Alw26I	GTCTC	2 cut(s)	103, 560
AlwI	GGATC	2 cut(s)	305, 620
AoxI	GGCC	1 cut(s)	684
ApeKI	GCWGC	4 cut(s)	185, 188, 413, 457
ApoI	RAATTY	2 cut(s)	175, 695
AspLEI	GCGC	4 cut(s)	114, 221, 298, 647
AspS9I	GGNCC	1 cut(s)	684
BanII	GRGCYC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	705
BbvI	GCAGC	4 cut(s)	172, 175, 425, 444
BccI	CCATC	2 cut(s)	38, 637
BclI	TGATCA	1 cut(s)	354
BcoDI	GTCTC	2 cut(s)	103, 560
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	458
BfoI	RGCGCY	1 cut(s)	648
BfrI	CTTAAG	1 cut(s)	475
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	6 cut(s)	6, 186, 189, 414, 458, 508
BlsI	GCNGC	6 cut(s)	7, 187, 190, 415, 459, 509
BmgT120I	GGNCC	1 cut(s)	684
BmsI	GCATC	2 cut(s)	121, 591
BsaAI	YACGTR	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	270
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse118I	RCCGGY	1 cut(s)	225
Bse3DI	GCAATG	2 cut(s)	247, 585
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	48, 589
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	2 cut(s)	247, 585
BseMII	CTCAG	2 cut(s)	605, 639
BseXI	GCAGC	4 cut(s)	172, 175, 425, 444
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	686
BsiHKAI	GWGCWC	1 cut(s)	705
BsiSI	CCGG	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	2 cut(s)	103, 560
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	686
Bsp1286I	GDGCHC	2 cut(s)	172, 705
Bsp143I	GATC	4 cut(s)	10, 310, 354, 625
BspACI	CCGC	2 cut(s)	5, 508
BspANI	GGCC	1 cut(s)	686
BspCNI	CTCAG	2 cut(s)	604, 640
BspFNI	CGCG	1 cut(s)	219
BspMAI	CTGCAG	1 cut(s)	462
BspPI	GGATC	2 cut(s)	305, 620
BspTI	CTTAAG	1 cut(s)	475
BsrBI	CCGCTC	1 cut(s)	510
BsrDI	GCAATG	2 cut(s)	247, 585
BsrFI	RCCGGY	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	4 cut(s)	10, 310, 354, 625
BssT1I	CCWWGG	1 cut(s)	270
Bst4CI	ACNGT	3 cut(s)	484, 659, 707
BstAFI	CTTAAG	1 cut(s)	475
BstBAI	YACGTR	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	2 cut(s)	591, 648
BstF5I	GGATG	2 cut(s)	48, 589
BstFNI	CGCG	1 cut(s)	219
BstH2I	RGCGCY	1 cut(s)	648
BstHHI	GCGC	4 cut(s)	114, 221, 298, 647
BstKTI	GATC	4 cut(s)	13, 313, 357, 628
BstMAI	GTCTC	2 cut(s)	103, 560
BstMBI	GATC	4 cut(s)	10, 310, 354, 625
BstMWI	GCNNNNNNNGC	1 cut(s)	601
BstSFI	CTRYAG	1 cut(s)	458
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	4 cut(s)	172, 175, 425, 444
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	686
BtsCI	GGATG	2 cut(s)	48, 589
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	2 cut(s)	480, 723
Cac8I	GCNNGC	1 cut(s)	223
CfoI	GCGC	4 cut(s)	114, 221, 298, 647
Cfr10I	RCCGGY	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	684
Csp6I	GTAC	2 cut(s)	281, 517
CviAII	CATG	7 cut(s)	67, 109, 319, 331, 381, 513, 677
CviJI	RGCY	9 cut(s)	29, 106, 170, 323, 416, 495, 507, 639, 686
CviKI_1	RGCY	9 cut(s)	29, 106, 170, 323, 416, 495, 507, 639, 686
CviQI	GTAC	2 cut(s)	281, 517
DdeI	CTNAG	2 cut(s)	591, 648
DpnI	GATC	4 cut(s)	12, 312, 356, 627
DpnII	GATC	4 cut(s)	10, 310, 354, 625
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	732
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	7 cut(s)	70, 112, 322, 334, 384, 516, 680
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	7 cut(s)	66, 108, 318, 330, 380, 512, 676
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	6 cut(s)	6, 186, 189, 414, 458, 508
FokI	GGATG	2 cut(s)	35, 596
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	6 cut(s)	6, 186, 189, 414, 458, 508
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	4 cut(s)	113, 220, 297, 646
GluI	GCNGC	6 cut(s)	6, 186, 189, 414, 458, 508
HaeII	RGCGCY	1 cut(s)	648
HaeIII	GGCC	1 cut(s)	686
HapII	CCGG	1 cut(s)	226
HhaI	GCGC	4 cut(s)	114, 221, 298, 647
Hin1II	CATG	7 cut(s)	70, 112, 322, 334, 384, 516, 680
Hin6I	GCGC	4 cut(s)	112, 219, 296, 645
HinP1I	GCGC	4 cut(s)	112, 219, 296, 645
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	1 cut(s)	367
HpaII	CCGG	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	4 cut(s)	35, 89, 174, 310
Hpy188III	TCNNGA	2 cut(s)	402, 662
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	2 cut(s)	143, 646
HpyCH4III	ACNGT	3 cut(s)	484, 659, 707
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	6 cut(s)	134, 290, 380, 460, 578, 604
HpyF10VI	GCNNNNNNNGC	1 cut(s)	601
HpyF3I	CTNAG	2 cut(s)	591, 648
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	7 cut(s)	70, 112, 322, 334, 384, 516, 680
HspAI	GCGC	4 cut(s)	112, 219, 296, 645
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	4 cut(s)	10, 310, 354, 625
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	7 cut(s)	239, 263, 377, 387, 433, 548, 686
Lsp1109I	GCAGC	4 cut(s)	172, 175, 425, 444
LweI	GCATC	2 cut(s)	121, 591
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	181
MalI	GATC	4 cut(s)	12, 312, 356, 627
MbiI	CCGCTC	1 cut(s)	510
MboI	GATC	4 cut(s)	10, 310, 354, 625
MboII	GAAGA	3 cut(s)	349, 581, 736
MfeI	CAATTG	1 cut(s)	155
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	2 cut(s)	172, 705
MluCI	AATT	5 cut(s)	155, 175, 193, 261, 695
MlyI	GAGTC	1 cut(s)	361
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	6 cut(s)	63, 95, 213, 238, 441, 536
MseI	TTAA	4 cut(s)	260, 476, 525, 539
MslI	CAYNNNNRTG	1 cut(s)	323
MspCI	CTTAAG	1 cut(s)	475
MspI	CCGG	1 cut(s)	226
MunI	CAATTG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	292
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	601
NdeII	GATC	4 cut(s)	10, 310, 354, 625
NlaIII	CATG	7 cut(s)	70, 112, 322, 334, 384, 516, 680
PcsI	WCGNNNNNNNCGW	1 cut(s)	178
PctI	GAATGC	1 cut(s)	292
PflFI	GACNNNGTC	1 cut(s)	668
PkrI	GCNGC	6 cut(s)	7, 187, 190, 415, 459, 509
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Ppu21I	YACGTR	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	684
PstI	CTGCAG	1 cut(s)	462
PsuI	RGATCY	1 cut(s)	10
PsyI	GACNNNGTC	1 cut(s)	668
RsaI	GTAC	2 cut(s)	282, 518
RsaNI	GTAC	2 cut(s)	281, 517
RseI	CAYNNNNRTG	1 cut(s)	323
SaqAI	TTAA	4 cut(s)	260, 476, 525, 539
SatI	GCNGC	6 cut(s)	6, 186, 189, 414, 458, 508
Sau3AI	GATC	4 cut(s)	10, 310, 354, 625
Sau96I	GGNCC	1 cut(s)	684
SchI	GAGTC	1 cut(s)	361
SduI	GDGCHC	2 cut(s)	172, 705
SfaNI	GCATC	2 cut(s)	121, 591
SfcI	CTRYAG	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	475
SmoI	CTYRAG	1 cut(s)	475
Sse9I	AATT	5 cut(s)	155, 175, 193, 261, 695
SsiI	CCGC	2 cut(s)	5, 508
SspMI	CTAG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	3 cut(s)	484, 659, 707
TaiI	ACGT	1 cut(s)	184
TasI	AATT	5 cut(s)	155, 175, 193, 261, 695
TauI	GCSGC	2 cut(s)	8, 510
Tru1I	TTAA	4 cut(s)	260, 476, 525, 539
Tru9I	TTAA	4 cut(s)	260, 476, 525, 539
TscAI	CASTG	2 cut(s)	487, 723
TseI	GCWGC	4 cut(s)	185, 188, 413, 457
TspDTI	ATGAA	2 cut(s)	187, 350
TspRI	CASTG	2 cut(s)	487, 723
Tth111I	GACNNNGTC	1 cut(s)	668
Vha464I	CTTAAG	1 cut(s)	475
XapI	RAATTY	2 cut(s)	175, 695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.