Rh5DG011400

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0008511
Physical Location & Seq
Reverse (-)
776786 .. 779190
2405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG011400.1

Sequence Viewer

Length: 534 bp
ATGGCGGCAGATCTGGTGCTAGACACGGCGATCAGAGACTGGGTTCTGATCCCTCTCTCGGTCGTCATGGTCCTCATCGGAGTCCTCCGATACTTCGTCTCCAAGCTCATGCGCTCCAGCCAAGTCCCCGATGCCAAAATCGTCAAAGAAGGGCAATTGGTTATTAGGGCTCGGAATTTGCGTGCTTCTGCTAATTTCATACCTCCCAAGTCGTTTCGTGCTCGCCGATTTTACTTCAGCAACGAGGAAAATGGGTTGTTATTTGTTCCTAAGGGTCAGGCACAGAATCCACAGGCGCAGATGTTCTCTGATCCCAACATGGCTATGGACATGATGAAGAAAAATTTGTCTATGATCATACCCCAGACTCTTACATTTGCGTGGGTCAACTTTTTCTTTTCTGGATTTGTAGCAGCCAAAATACCTTTTCCTCTTACTCAGAGGTTCAGGTCAATGTTGCAGAATGGGATTGACTTGAGCACTGTTGATGTCAGCTATGTCAGTAGCCGCTCATGGTACTTACCTATGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF106

Protein Analysis

177

Amino Acids

20.15

Weight (kDa)

10.27

Isoelectric Point (pI)

33.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMC3_TMCO1 PF01956 4 - 174 3.7e-44 Integral membrane protein EMC3/TMCO1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 510
AciI CCGC 2 cut(s) 5, 508
AclWI GGATC 2 cut(s) 43, 305
AcsI RAATTY 2 cut(s) 175, 343
AcuI CTGAAG 1 cut(s) 220
AfaI GTAC 1 cut(s) 518
AfiI CCNNNNNNNGG 1 cut(s) 58
AluBI AGCT 2 cut(s) 106, 495
AluI AGCT 2 cut(s) 106, 495
Alw21I GWGCWC 2 cut(s) 223, 482
Alw26I GTCTC 2 cut(s) 30, 103
AlwI GGATC 2 cut(s) 43, 305
AlwNI CAGNNNCTG 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 413
ApoI RAATTY 2 cut(s) 175, 343
AspLEI GCGC 2 cut(s) 114, 298
AspS9I GGNCC 1 cut(s) 70
AvaII GGWCC 1 cut(s) 70
AxyI CCTNAGG 1 cut(s) 270
BanII GRGCYC 1 cut(s) 172
Bbv12I GWGCWC 2 cut(s) 223, 482
BbvI GCAGC 1 cut(s) 425
BceAI ACGGC 1 cut(s) 42
BclI TGATCA 1 cut(s) 354
BcoDI GTCTC 2 cut(s) 30, 103
BfaI CTAG 1 cut(s) 20
BglII AGATCT 1 cut(s) 10
BisI GCNGC 3 cut(s) 6, 414, 508
BlsI GCNGC 3 cut(s) 7, 415, 509
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmrI ACTGGG 1 cut(s) 49
BmsI GCATC 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 49
BpmI CTGGAG 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 496
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 44
Bse21I CCTNAGG 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 452
BseNI ACTGG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 425
Bsh1285I CGRYCG 1 cut(s) 63
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 2 cut(s) 223, 482
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 2 cut(s) 30, 103
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 110
Bsp1286I GDGCHC 3 cut(s) 172, 223, 482
Bsp143I GATC 5 cut(s) 10, 30, 48, 310, 354
BspACI CCGC 2 cut(s) 5, 508
BspCNI CTCAG 1 cut(s) 451
BspPI GGATC 2 cut(s) 43, 305
BsrBI CCGCTC 1 cut(s) 510
BsrI ACTGG 1 cut(s) 44
BssMI GATC 5 cut(s) 10, 30, 48, 310, 354
Bst4CI ACNGT 1 cut(s) 484
BstC8I GCNNGC 2 cut(s) 183, 223
BstDEI CTNAG 2 cut(s) 270, 438
BstHHI GCGC 2 cut(s) 114, 298
BstKTI GATC 5 cut(s) 13, 33, 51, 313, 357
BstMAI GTCTC 2 cut(s) 30, 103
BstMBI GATC 5 cut(s) 10, 30, 48, 310, 354
BstMCI CGRYCG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 425
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
Bsu36I CCTNAGG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 480
Cac8I GCNNGC 2 cut(s) 183, 223
CaiI CAGNNNCTG 1 cut(s) 39
CfoI GCGC 2 cut(s) 114, 298
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 517
CviAII CATG 5 cut(s) 67, 109, 319, 331, 513
CviJI RGCY 7 cut(s) 106, 120, 170, 323, 416, 495, 507
CviKI_1 RGCY 7 cut(s) 106, 120, 170, 323, 416, 495, 507
CviQI GTAC 1 cut(s) 517
DdeI CTNAG 2 cut(s) 270, 438
DpnI GATC 5 cut(s) 12, 32, 50, 312, 356
DpnII GATC 5 cut(s) 10, 30, 48, 310, 354
Eco24I GRGCYC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 220
Eco81I CCTNAGG 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 172
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 5 cut(s) 70, 112, 322, 334, 516
FaqI GGGAC 1 cut(s) 110
FatI CATG 5 cut(s) 66, 108, 318, 330, 512
FbaI TGATCA 1 cut(s) 354
Fnu4HI GCNGC 3 cut(s) 6, 414, 508
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 3 cut(s) 6, 414, 508
FspBI CTAG 1 cut(s) 20
GlaI GCGC 2 cut(s) 113, 297
GluI GCNGC 3 cut(s) 6, 414, 508
GsuI CTGGAG 1 cut(s) 100
HhaI GCGC 2 cut(s) 114, 298
Hin1II CATG 5 cut(s) 70, 112, 322, 334, 516
Hin6I GCGC 2 cut(s) 112, 296
HinP1I GCGC 2 cut(s) 112, 296
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 3 cut(s) 81, 286, 367
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 7 cut(s) 35, 48, 80, 89, 174, 310, 441
Hpy188III TCNNGA 1 cut(s) 402
Hpy8I GTNNAC 1 cut(s) 388
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 484
HpyCH4V TGCA 1 cut(s) 460
HpyF3I CTNAG 2 cut(s) 270, 438
Hsp92II CATG 5 cut(s) 70, 112, 322, 334, 516
HspAI GCGC 2 cut(s) 112, 296
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 5 cut(s) 10, 30, 48, 310, 354
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 7 cut(s) 25, 130, 263, 278, 377, 387, 433
Lsp1109I GCAGC 1 cut(s) 425
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 20
MalI GATC 5 cut(s) 12, 32, 50, 312, 356
MbiI CCGCTC 1 cut(s) 510
MboI GATC 5 cut(s) 10, 30, 48, 310, 354
MboII GAAGA 1 cut(s) 349
MfeI CAATTG 1 cut(s) 155
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 3 cut(s) 172, 223, 482
MluCI AATT 4 cut(s) 155, 175, 193, 343
MlyI GAGTC 2 cut(s) 90, 361
MnlI CCTC 7 cut(s) 63, 83, 95, 213, 238, 435, 441
MseI TTAA 1 cut(s) 532
MslI CAYNNNNRTG 2 cut(s) 323, 379
MunI CAATTG 1 cut(s) 155
NdeII GATC 5 cut(s) 10, 30, 48, 310, 354
NlaIII CATG 5 cut(s) 70, 112, 322, 334, 516
PcsI WCGNNNNNNNCGW 2 cut(s) 178, 223
PfeI GAWTC 1 cut(s) 286
PkrI GCNGC 3 cut(s) 7, 415, 509
PleI GAGTC 2 cut(s) 89, 361
PpsI GAGTC 2 cut(s) 89, 361
PspPI GGNCC 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 39
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 1 cut(s) 518
RsaNI GTAC 1 cut(s) 517
RseI CAYNNNNRTG 2 cut(s) 323, 379
SaqAI TTAA 1 cut(s) 532
SatI GCNGC 3 cut(s) 6, 414, 508
Sau3AI GATC 5 cut(s) 10, 30, 48, 310, 354
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 2 cut(s) 90, 361
SduI GDGCHC 3 cut(s) 172, 223, 482
SetI ASST 7 cut(s) 108, 205, 427, 446, 452, 497, 526
SfaNI GCATC 1 cut(s) 121
SinI GGWCC 1 cut(s) 70
SmiMI CAYNNNNRTG 2 cut(s) 323, 379
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
Sse9I AATT 4 cut(s) 155, 175, 193, 343
SsiI CCGC 2 cut(s) 5, 508
SspMI CTAG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 484
TaqII GACCGA 1 cut(s) 49
TasI AATT 4 cut(s) 155, 175, 193, 343
TauI GCSGC 2 cut(s) 8, 510
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 1 cut(s) 532
Tru9I TTAA 1 cut(s) 532
TscAI CASTG 1 cut(s) 487
TseI GCWGC 1 cut(s) 413
TspDTI ATGAA 2 cut(s) 187, 350
TspRI CASTG 1 cut(s) 487
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 2 cut(s) 175, 343
XcmI CCANNNNNNNNNTGG 1 cut(s) 322
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.