RLG00000030929

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008511
Physical Location & Seq
Reverse (-)
733782 .. 738161
4380 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030929

Sequence Viewer

Length: 1053 bp
ATGGCGGCAGATCTGGTGCTAGACACGGCGATCAGAGACTGGGTTCTGATCCCTCTCTCGGTCGTCATGGTCCTCATCGGAGTCCTCCGATACTTCGTCTCCAAGCTCATGCGCTCCAGCCAAGTCCCCGATGCCAAAATCGTCAAAGAAGGGCAATTGGTTATTAGGGCTCGGAATTTGCGTGCTTCTGCTAATTTCATACCTCCCAAGTCGTTTCGTGCTCGCCGATTTTACTTCAGCAACGAGGAAAATGGGTTGTTATTTGTTCCTAAGGGTCAGGCACAGAATCCACAGGCACAGATGTTCTCTGATCCCAACATGGCTATGGACATGATGAAGAAAAATTTGTCTATGATCATACCCCAGACTCTTACATTTGCGTGGGTCAACTTTTTCTTCTCTGGATTTGTAGCAGCCAAAATACCTTTTCCTCTTACTCAGAGGTTCAGGTCAATGTTGCAGAATGGGATTGACTTGAGCACTGTTGATGTCAGCTATGTCAGTAGCCGCTCATGGTACTTTCTCAATTTGTTTGGATTGAGAGGCTTGTTCAGTCTCATTCTGGGAGAAGAAAATGCCATGGATGATACTCAGCGTATGATGCAAATGAGTGGGTTCGGCATGGATCCATCAAAGAGTTTGGGTGCTGAGAAGGACAGTCTTGATATAATCCAGCACGATTGGGCCTTACCAAAATTTGAGCATCGTGCGGAAGCTGTGTTGAAGAAACTTGTCCGGGAACATCGGACGGCTCGGAGTGGGTCCCGAGTCACGAGCGTCCTACCTGGAAAGCATGACGAACATGGCCCACGTGGCCCATGGGCCCGCCAAAAGCATGAAAGCGGGGCGGTTCCTAAAGCCAAGCGCAATGGGCCGAAAAAGCAAGAAAAAGTCGGACACGGCAGCGTTTTGATTAGTTTAGTGTGGGGCCCGCTTGGGGAGGCATATGGGGCGGTAATGATCGTTTATGGTGGTGTGGGTCGCGCACAGTACTGGCATCAGGCACCGTCCCTTGAAAGGTTTGGTTTCTTTTGCTTGGCTCACGTCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF106

Protein Analysis

351

Amino Acids

39.37

Weight (kDa)

9.96

Isoelectric Point (pI)

25.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMC3_TMCO1 PF01956 4 - 192 1.9e-51 Integral membrane protein EMC3/TMCO1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1003
AccBSI CCGCTC 1 cut(s) 510
AccII CGCG 1 cut(s) 984
AciI CCGC 8 cut(s) 5, 508, 710, 826, 843, 848, 932, 953
AclWI GGATC 4 cut(s) 43, 305, 620, 633
AcsI RAATTY 3 cut(s) 175, 343, 695
AcuI CTGAAG 1 cut(s) 220
AcvI CACGTG 1 cut(s) 812
AfaI GTAC 2 cut(s) 518, 992
AfiI CCNNNNNNNGG 3 cut(s) 58, 937, 1017
AgsI TTSAA 2 cut(s) 724, 1016
AjiI CACGTC 1 cut(s) 1045
AjnI CCWGG 1 cut(s) 784
AluBI AGCT 3 cut(s) 106, 495, 716
AluI AGCT 3 cut(s) 106, 495, 716
Alw21I GWGCWC 2 cut(s) 223, 482
Alw26I GTCTC 3 cut(s) 30, 103, 560
AlwI GGATC 4 cut(s) 43, 305, 620, 633
AlwNI CAGNNNCTG 1 cut(s) 39
Ama87I CYCGRG 1 cut(s) 765
AoxI GGCC 6 cut(s) 684, 805, 814, 822, 872, 928
ApaI GGGCCC 2 cut(s) 826, 932
ApeKI GCWGC 2 cut(s) 413, 903
ApoI RAATTY 3 cut(s) 175, 343, 695
AspLEI GCGC 3 cut(s) 114, 867, 986
AsuC2I CCSGG 1 cut(s) 737
AvaI CYCGRG 1 cut(s) 765
AvaII GGWCC 2 cut(s) 70, 762
AxyI CCTNAGG 1 cut(s) 270
BaeGI GKGCMC 2 cut(s) 826, 932
BamHI GGATCC 1 cut(s) 625
BanI GGYRCC 1 cut(s) 1003
BanII GRGCYC 3 cut(s) 172, 826, 932
BauI CACGAG 1 cut(s) 772
BbrPI CACGTG 1 cut(s) 812
Bbv12I GWGCWC 2 cut(s) 223, 482
BbvI GCAGC 2 cut(s) 425, 915
BccI CCATC 1 cut(s) 637
BceAI ACGGC 3 cut(s) 42, 765, 916
BciT130I CCWGG 1 cut(s) 786
BclI TGATCA 1 cut(s) 354
BcnI CCSGG 1 cut(s) 737
BcoDI GTCTC 3 cut(s) 30, 103, 560
BfaI CTAG 1 cut(s) 20
BglI GCCNNNNNGGC 1 cut(s) 813
BglII AGATCT 1 cut(s) 10
BisI GCNGC 4 cut(s) 6, 414, 508, 904
BlsI GCNGC 4 cut(s) 7, 415, 509, 905
BmcAI AGTACT 1 cut(s) 992
Bme1390I CCNGG 2 cut(s) 737, 786
Bme18I GGWCC 2 cut(s) 70, 762
BmeT110I CYCGRG 1 cut(s) 765
BmgBI CACGTC 1 cut(s) 1045
BmiI GGNNCC 8 cut(s) 627, 763, 764, 824, 852, 929, 930, 1005
BmrFI CCNGG 2 cut(s) 737, 786
BmrI ACTGGG 1 cut(s) 49
BmsI GCATC 4 cut(s) 121, 591, 712, 1006
BmuI ACTGGG 1 cut(s) 49
BpmI CTGGAG 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 496
BpuMI CCSGG 1 cut(s) 737
BsaAI YACGTR 1 cut(s) 812
BsaJI CCNNGG 2 cut(s) 579, 818
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 937, 1017
Bse1I ACTGG 2 cut(s) 44, 998
Bse21I CCTNAGG 1 cut(s) 270
Bse3DI GCAATG 1 cut(s) 874
BseBI CCWGG 1 cut(s) 786
BseDI CCNNGG 2 cut(s) 579, 818
BseGI GGATG 1 cut(s) 589
BseLI CCNNNNNNNGG 3 cut(s) 58, 937, 1017
BseMI GCAATG 1 cut(s) 874
BseMII CTCAG 3 cut(s) 452, 605, 639
BseNI ACTGG 2 cut(s) 44, 998
BseSI GKGCMC 2 cut(s) 826, 932
BseXI GCAGC 2 cut(s) 425, 915
Bsh1236I CGCG 1 cut(s) 984
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 6 cut(s) 686, 807, 816, 824, 874, 930
BshNI GGYRCC 1 cut(s) 1003
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 2 cut(s) 223, 482
BsiHKCI CYCGRG 1 cut(s) 765
BsiSI CCGG 1 cut(s) 736
BslFI GGGAC 3 cut(s) 110, 748, 994
BslI CCNNNNNNNGG 3 cut(s) 58, 937, 1017
BsmAI GTCTC 3 cut(s) 30, 103, 560
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 3 cut(s) 110, 748, 994
BsnI GGCC 6 cut(s) 686, 807, 816, 824, 874, 930
BsoBI CYCGRG 1 cut(s) 765
Bsp120I GGGCCC 2 cut(s) 822, 928
Bsp1286I GDGCHC 5 cut(s) 172, 223, 482, 826, 932
Bsp143I GATC 7 cut(s) 10, 30, 48, 310, 354, 625, 960
Bsp19I CCATGG 2 cut(s) 579, 818
BspACI CCGC 8 cut(s) 5, 508, 710, 826, 843, 848, 932, 953
BspANI GGCC 6 cut(s) 686, 807, 816, 824, 874, 930
BspCNI CTCAG 3 cut(s) 451, 604, 640
BspFNI CGCG 1 cut(s) 984
BspLI GGNNCC 8 cut(s) 627, 763, 764, 824, 852, 929, 930, 1005
BspPI GGATC 4 cut(s) 43, 305, 620, 633
BspT107I GGYRCC 1 cut(s) 1003
BsrBI CCGCTC 1 cut(s) 510
BsrDI GCAATG 1 cut(s) 874
BsrI ACTGG 2 cut(s) 44, 998
BssECI CCNNGG 2 cut(s) 579, 818
BssMI GATC 7 cut(s) 10, 30, 48, 310, 354, 625, 960
BssSI CACGAG 1 cut(s) 772
BssT1I CCWWGG 2 cut(s) 579, 818
Bst2BI CACGAG 1 cut(s) 772
Bst2UI CCWGG 1 cut(s) 786
Bst4CI ACNGT 4 cut(s) 484, 659, 990, 1008
BstBAI YACGTR 1 cut(s) 812
BstC8I GCNNGC 4 cut(s) 183, 223, 826, 932
BstDEI CTNAG 4 cut(s) 270, 438, 591, 648
BstDSI CCRYGG 2 cut(s) 579, 818
BstF5I GGATG 1 cut(s) 589
BstFNI CGCG 1 cut(s) 984
BstHHI GCGC 3 cut(s) 114, 867, 986
BstKTI GATC 7 cut(s) 13, 33, 51, 313, 357, 628, 963
BstMAI GTCTC 3 cut(s) 30, 103, 560
BstMBI GATC 7 cut(s) 10, 30, 48, 310, 354, 625, 960
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 5 cut(s) 601, 813, 871, 880, 950
BstNI CCWGG 1 cut(s) 786
BstSCI CCNGG 2 cut(s) 735, 784
BstSLI GKGCMC 2 cut(s) 826, 932
BstUI CGCG 1 cut(s) 984
BstV1I GCAGC 2 cut(s) 425, 915
BstX2I RGATCY 2 cut(s) 10, 625
BstYI RGATCY 2 cut(s) 10, 625
Bsu36I CCTNAGG 1 cut(s) 270
BsuRI GGCC 6 cut(s) 686, 807, 816, 824, 874, 930
BtgI CCRYGG 2 cut(s) 579, 818
BtrI CACGTC 1 cut(s) 1045
BtsCI GGATG 1 cut(s) 589
BtsIMutI CAGTG 2 cut(s) 480, 1048
Cac8I GCNNGC 4 cut(s) 183, 223, 826, 932
CaiI CAGNNNCTG 1 cut(s) 39
CfoI GCGC 3 cut(s) 114, 867, 986
CseI GACGC 1 cut(s) 766
Csp6I GTAC 2 cut(s) 517, 991
CviQI GTAC 2 cut(s) 517, 991
DdeI CTNAG 4 cut(s) 270, 438, 591, 648
DpnI GATC 7 cut(s) 12, 32, 50, 312, 356, 627, 962
DpnII GATC 7 cut(s) 10, 30, 48, 310, 354, 625, 960
Eco130I CCWWGG 2 cut(s) 579, 818
Eco24I GRGCYC 3 cut(s) 172, 826, 932
Eco47I GGWCC 2 cut(s) 70, 762
Eco57I CTGAAG 1 cut(s) 220
Eco72I CACGTG 1 cut(s) 812
Eco81I CCTNAGG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 765
EcoO109I RGGNCCY 2 cut(s) 762, 928
EcoRII CCWGG 1 cut(s) 784
EcoT14I CCWWGG 2 cut(s) 579, 818
EcoT38I GRGCYC 3 cut(s) 172, 826, 932
ErhI CCWWGG 2 cut(s) 579, 818
Esp3I CGTCTC 1 cut(s) 103
FaqI GGGAC 3 cut(s) 110, 748, 994
FauI CCCGC 3 cut(s) 833, 836, 939
FauNDI CATATG 1 cut(s) 946
FbaI TGATCA 1 cut(s) 354
Fnu4HI GCNGC 4 cut(s) 6, 414, 508, 904
FokI GGATG 1 cut(s) 596
FriOI GRGCYC 3 cut(s) 172, 826, 932
Fsp4HI GCNGC 4 cut(s) 6, 414, 508, 904
FspBI CTAG 1 cut(s) 20
GlaI GCGC 3 cut(s) 113, 866, 985
GluI GCNGC 4 cut(s) 6, 414, 508, 904
GsuI CTGGAG 1 cut(s) 100
HaeIII GGCC 6 cut(s) 686, 807, 816, 824, 874, 930
HapII CCGG 1 cut(s) 736
HgaI GACGC 1 cut(s) 766
HhaI GCGC 3 cut(s) 114, 867, 986
Hin6I GCGC 3 cut(s) 112, 865, 984
HinP1I GCGC 3 cut(s) 112, 865, 984
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 4 cut(s) 81, 286, 367, 768
HpaII CCGG 1 cut(s) 736
Hpy166II GTNNAC 2 cut(s) 388, 1048
Hpy188III TCNNGA 4 cut(s) 402, 662, 765, 772
Hpy8I GTNNAC 2 cut(s) 388, 1048
HpyAV CCTTC 2 cut(s) 143, 646
HpyCH4III ACNGT 4 cut(s) 484, 659, 990, 1008
HpyCH4IV ACGT 2 cut(s) 811, 1044
HpyCH4V TGCA 2 cut(s) 460, 604
HpyF10VI GCNNNNNNNGC 5 cut(s) 601, 813, 871, 880, 950
HpyF3I CTNAG 4 cut(s) 270, 438, 591, 648
HpySE526I ACGT 2 cut(s) 811, 1044
HspAI GCGC 3 cut(s) 112, 865, 984
KflI GGGWCCC 1 cut(s) 762
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 7 cut(s) 10, 30, 48, 310, 354, 625, 960
LmnI GCTCC 1 cut(s) 119
Lsp1109I GCAGC 2 cut(s) 425, 915
LweI GCATC 4 cut(s) 121, 591, 712, 1006
MaeI CTAG 1 cut(s) 20
MaeII ACGT 2 cut(s) 811, 1044
MaeIII GTNAC 1 cut(s) 769
MalI GATC 7 cut(s) 12, 32, 50, 312, 356, 627, 962
MbiI CCGCTC 1 cut(s) 510
MboI GATC 7 cut(s) 10, 30, 48, 310, 354, 625, 960
MboII GAAGA 4 cut(s) 349, 388, 581, 736
MfeI CAATTG 1 cut(s) 155
MflI RGATCY 2 cut(s) 10, 625
MhlI GDGCHC 5 cut(s) 172, 223, 482, 826, 932
MluCI AATT 6 cut(s) 155, 175, 193, 343, 526, 695
MlyI GAGTC 3 cut(s) 90, 361, 777
MmeI TCCRAC 1 cut(s) 874
MnlI CCTC 9 cut(s) 63, 83, 95, 213, 238, 435, 441, 536, 934
MslI CAYNNNNRTG 2 cut(s) 323, 379
MspI CCGG 1 cut(s) 736
MspR9I CCNGG 2 cut(s) 737, 786
MunI CAATTG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 786
MvnI CGCG 1 cut(s) 984
MwoI GCNNNNNNNGC 5 cut(s) 601, 813, 871, 880, 950
NciI CCSGG 1 cut(s) 737
NcoI CCATGG 2 cut(s) 579, 818
NdeI CATATG 1 cut(s) 946
NdeII GATC 7 cut(s) 10, 30, 48, 310, 354, 625, 960
NlaIV GGNNCC 8 cut(s) 627, 763, 764, 824, 852, 929, 930, 1005
NmuCI GTSAC 1 cut(s) 769
PcsI WCGNNNNNNNCGW 2 cut(s) 178, 223
PfeI GAWTC 1 cut(s) 286
PfoI TCCNGGA 1 cut(s) 735
PkrI GCNGC 4 cut(s) 7, 415, 509, 905
PleI GAGTC 3 cut(s) 89, 361, 776
PmaCI CACGTG 1 cut(s) 812
PmlI CACGTG 1 cut(s) 812
PpsI GAGTC 3 cut(s) 89, 361, 776
Ppu21I YACGTR 1 cut(s) 812
PpuMI RGGWCCY 1 cut(s) 762
Psp5II RGGWCCY 1 cut(s) 762
Psp6I CCWGG 1 cut(s) 784
PspCI CACGTG 1 cut(s) 812
PspGI CCWGG 1 cut(s) 784
PspN4I GGNNCC 8 cut(s) 627, 763, 764, 824, 852, 929, 930, 1005
PspOMI GGGCCC 2 cut(s) 822, 928
PspPPI RGGWCCY 1 cut(s) 762
PstNI CAGNNNCTG 1 cut(s) 39
PsuI RGATCY 2 cut(s) 10, 625
RsaI GTAC 2 cut(s) 518, 992
RsaNI GTAC 2 cut(s) 517, 991
RseI CAYNNNNRTG 2 cut(s) 323, 379
SatI GCNGC 4 cut(s) 6, 414, 508, 904
Sau3AI GATC 7 cut(s) 10, 30, 48, 310, 354, 625, 960
ScaI AGTACT 1 cut(s) 992
SchI GAGTC 3 cut(s) 90, 361, 777
ScrFI CCNGG 2 cut(s) 737, 786
SduI GDGCHC 5 cut(s) 172, 223, 482, 826, 932
SfaNI GCATC 4 cut(s) 121, 591, 712, 1006
SfiI GGCCNNNNNGGCC 1 cut(s) 813
SinI GGWCC 2 cut(s) 70, 762
SmiMI CAYNNNNRTG 2 cut(s) 323, 379
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
Sse9I AATT 6 cut(s) 155, 175, 193, 343, 526, 695
SsiI CCGC 8 cut(s) 5, 508, 710, 826, 843, 848, 932, 953
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 735, 784
StyI CCWWGG 2 cut(s) 579, 818
TaaI ACNGT 4 cut(s) 484, 659, 990, 1008
TaiI ACGT 2 cut(s) 814, 1047
TaqII GACCGA 1 cut(s) 49
TasI AATT 6 cut(s) 155, 175, 193, 343, 526, 695
TatI WGTACW 1 cut(s) 990
TauI GCSGC 2 cut(s) 8, 510
TfiI GAWTC 1 cut(s) 286
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 769
TseI GCWGC 2 cut(s) 413, 903
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 3 cut(s) 187, 350, 852
TspRI CASTG 1 cut(s) 487
VpaK11BI GGWCC 2 cut(s) 70, 762
XapI RAATTY 3 cut(s) 175, 343, 695
XcmI CCANNNNNNNNNTGG 2 cut(s) 322, 816
XspI CTAG 1 cut(s) 20
ZrmI AGTACT 1 cut(s) 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.