Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008511

Physical Location & Seq

Genomic Coordinates Reverse (-)

1028366 .. 1031416

Gene Structure 3051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG013700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCGGCAGATCTGGTGCTAGACACGGCGATCAGAGACTGGGTTCTGATCCCTCTCTCGGTCGTCATGGTCCTCATCGGAGTCCTCCGATACTTCGTCTCCAAGCTCATGCGCTCCAGCCAAGTCCCCGATGCCAAAATCGTCAAAGAAGGGCAATTGGTTATTAGGGCTCGGAATTTGCGTGCTTCTGCTAATTTCATACCTCCCAAGTCGTTTCGTGCTCGCCGATTTTACTTCAGCAACGAGGAAAATGGGTTGTTATTTGTTCCTAAGGGTCAGGCACAGAATCCACAGGCGCAGATGTTCTCTGATCCCAACATGGCTATGGACATGATGAAGAAAAATTTGTCTATGATCATACCCCAGACTCTTACATTTGCGTGGGTCAACTTTTTCTTCTCTGGATTTGTAGCAGCCAAAATACCTTTTCCTCTTACTCAGAGGTTCAGGTCAATGTTGCAGAATGGGATTGACTTGAGCACTGTTGATGTCAGCTATGTCAGTAGCCGCTCATGGTACTTTCTCAATCTGTTTGGATTGAGAGGCTTGTTCAGTCTCATTCTGGGAGAAGAAAATGCCATGGATGATACTCAGCGTATGATGCAAATGAGTGGGTTCGGCATGGATCCATCAAAGGTAATAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF106

Protein Analysis

215

Amino Acids

24.42

Weight (kDa)

9.92

Isoelectric Point (pI)

30.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMC3_TMCO1	PF01956	4 - 192	4.2e-52	Integral membrane protein EMC3/TMCO1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12590
fragaria_vesca	FvH4_3g00930 FvH4_3g00930 FvH4_3g00930 FvH4_3g00930 FvH4_3g00930
malus_domestica	MD05G1358200.v1.1 MD10G1332200.v1.1 MD10G1332300.v1.1
prunus_persica	Prupe.4G009900_v2.0.a1
pyrus_communis	pycom05g32400 pycom10g28170
rosa_chinensis	RchiOBHm_Chr5g0001451
rosa_laevigata	RLG00000030929
rosa_multiflora	Rmu_co8403483.1_g000001 Rmu_sc0042889.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074940
rosa_rugosa	Rorug04G0390400
rosa_samantha	Rh5AG011200 Rh5BG013700 Rh5CG012200 Rh5DG011400
rosa_wichuraiana	Rw5G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	510
AciI	CCGC	2 cut(s)	5, 508
AclWI	GGATC	4 cut(s)	43, 305, 620, 633
AcsI	RAATTY	2 cut(s)	175, 343
AcuI	CTGAAG	1 cut(s)	220
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	1 cut(s)	58
AluBI	AGCT	2 cut(s)	106, 495
AluI	AGCT	2 cut(s)	106, 495
Alw21I	GWGCWC	2 cut(s)	223, 482
Alw26I	GTCTC	3 cut(s)	30, 103, 560
AlwI	GGATC	4 cut(s)	43, 305, 620, 633
AlwNI	CAGNNNCTG	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	2 cut(s)	175, 343
AspLEI	GCGC	2 cut(s)	114, 298
AspS9I	GGNCC	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	70
AxyI	CCTNAGG	1 cut(s)	270
BamHI	GGATCC	1 cut(s)	625
BanII	GRGCYC	1 cut(s)	172
Bbv12I	GWGCWC	2 cut(s)	223, 482
BbvI	GCAGC	1 cut(s)	425
BccI	CCATC	1 cut(s)	637
BceAI	ACGGC	1 cut(s)	42
BclI	TGATCA	1 cut(s)	354
BcoDI	GTCTC	3 cut(s)	30, 103, 560
BfaI	CTAG	1 cut(s)	20
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	3 cut(s)	6, 414, 508
BlsI	GCNGC	3 cut(s)	7, 415, 509
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	627
BmrI	ACTGGG	1 cut(s)	49
BmsI	GCATC	2 cut(s)	121, 591
BmuI	ACTGGG	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	496
BsaJI	CCNNGG	1 cut(s)	579
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	44
Bse21I	CCTNAGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	579
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	2 cut(s)	452, 605
BseNI	ACTGG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	425
Bsh1285I	CGRYCG	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	2 cut(s)	223, 482
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	3 cut(s)	30, 103, 560
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	110
Bsp1286I	GDGCHC	3 cut(s)	172, 223, 482
Bsp143I	GATC	6 cut(s)	10, 30, 48, 310, 354, 625
Bsp19I	CCATGG	1 cut(s)	579
BspACI	CCGC	2 cut(s)	5, 508
BspCNI	CTCAG	2 cut(s)	451, 604
BspLI	GGNNCC	1 cut(s)	627
BspPI	GGATC	4 cut(s)	43, 305, 620, 633
BsrBI	CCGCTC	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	579
BssMI	GATC	6 cut(s)	10, 30, 48, 310, 354, 625
BssT1I	CCWWGG	1 cut(s)	579
Bst4CI	ACNGT	1 cut(s)	484
BstC8I	GCNNGC	2 cut(s)	183, 223
BstDEI	CTNAG	3 cut(s)	270, 438, 591
BstDSI	CCRYGG	1 cut(s)	579
BstF5I	GGATG	1 cut(s)	589
BstHHI	GCGC	2 cut(s)	114, 298
BstKTI	GATC	6 cut(s)	13, 33, 51, 313, 357, 628
BstMAI	GTCTC	3 cut(s)	30, 103, 560
BstMBI	GATC	6 cut(s)	10, 30, 48, 310, 354, 625
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	601
BstV1I	GCAGC	1 cut(s)	425
BstX2I	RGATCY	2 cut(s)	10, 625
BstYI	RGATCY	2 cut(s)	10, 625
Bsu36I	CCTNAGG	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	579
BtsCI	GGATG	1 cut(s)	589
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	2 cut(s)	183, 223
CaiI	CAGNNNCTG	1 cut(s)	39
CfoI	GCGC	2 cut(s)	114, 298
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	7 cut(s)	67, 109, 319, 331, 513, 580, 622
CviJI	RGCY	8 cut(s)	106, 120, 170, 323, 416, 495, 507, 546
CviKI_1	RGCY	8 cut(s)	106, 120, 170, 323, 416, 495, 507, 546
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	3 cut(s)	270, 438, 591
DpnI	GATC	6 cut(s)	12, 32, 50, 312, 356, 627
DpnII	GATC	6 cut(s)	10, 30, 48, 310, 354, 625
Eco130I	CCWWGG	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	220
Eco81I	CCTNAGG	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	579
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	579
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	7 cut(s)	70, 112, 322, 334, 516, 583, 625
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	7 cut(s)	66, 108, 318, 330, 512, 579, 621
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	3 cut(s)	6, 414, 508
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	3 cut(s)	6, 414, 508
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	2 cut(s)	113, 297
GluI	GCNGC	3 cut(s)	6, 414, 508
GsuI	CTGGAG	1 cut(s)	100
HhaI	GCGC	2 cut(s)	114, 298
Hin1II	CATG	7 cut(s)	70, 112, 322, 334, 516, 583, 625
Hin6I	GCGC	2 cut(s)	112, 296
HinP1I	GCGC	2 cut(s)	112, 296
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	3 cut(s)	81, 286, 367
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	7 cut(s)	35, 48, 80, 89, 174, 310, 441
Hpy188III	TCNNGA	1 cut(s)	402
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4V	TGCA	2 cut(s)	460, 604
HpyF10VI	GCNNNNNNNGC	1 cut(s)	601
HpyF3I	CTNAG	3 cut(s)	270, 438, 591
Hsp92II	CATG	7 cut(s)	70, 112, 322, 334, 516, 583, 625
HspAI	GCGC	2 cut(s)	112, 296
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	6 cut(s)	10, 30, 48, 310, 354, 625
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	8 cut(s)	25, 130, 263, 278, 377, 387, 433, 548
Lsp1109I	GCAGC	1 cut(s)	425
LweI	GCATC	2 cut(s)	121, 591
MaeI	CTAG	1 cut(s)	20
MalI	GATC	6 cut(s)	12, 32, 50, 312, 356, 627
MbiI	CCGCTC	1 cut(s)	510
MboI	GATC	6 cut(s)	10, 30, 48, 310, 354, 625
MboII	GAAGA	3 cut(s)	349, 388, 581
MfeI	CAATTG	1 cut(s)	155
MflI	RGATCY	2 cut(s)	10, 625
MhlI	GDGCHC	3 cut(s)	172, 223, 482
MluCI	AATT	4 cut(s)	155, 175, 193, 343
MlyI	GAGTC	2 cut(s)	90, 361
MnlI	CCTC	8 cut(s)	63, 83, 95, 213, 238, 435, 441, 536
MslI	CAYNNNNRTG	2 cut(s)	323, 379
MunI	CAATTG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	601
NcoI	CCATGG	1 cut(s)	579
NdeII	GATC	6 cut(s)	10, 30, 48, 310, 354, 625
NlaIII	CATG	7 cut(s)	70, 112, 322, 334, 516, 583, 625
NlaIV	GGNNCC	1 cut(s)	627
PcsI	WCGNNNNNNNCGW	2 cut(s)	178, 223
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	3 cut(s)	7, 415, 509
PleI	GAGTC	2 cut(s)	89, 361
PpsI	GAGTC	2 cut(s)	89, 361
PspN4I	GGNNCC	1 cut(s)	627
PspPI	GGNCC	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	39
PsuI	RGATCY	2 cut(s)	10, 625
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	2 cut(s)	323, 379
SatI	GCNGC	3 cut(s)	6, 414, 508
Sau3AI	GATC	6 cut(s)	10, 30, 48, 310, 354, 625
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	2 cut(s)	90, 361
SduI	GDGCHC	3 cut(s)	172, 223, 482
SetI	ASST	8 cut(s)	108, 205, 427, 446, 452, 497, 639, 647
SfaNI	GCATC	2 cut(s)	121, 591
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	2 cut(s)	323, 379
SmlI	CTYRAG	1 cut(s)	475
SmoI	CTYRAG	1 cut(s)	475
Sse9I	AATT	4 cut(s)	155, 175, 193, 343
SsiI	CCGC	2 cut(s)	5, 508
SspMI	CTAG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	1 cut(s)	484
TaqII	GACCGA	1 cut(s)	49
TasI	AATT	4 cut(s)	155, 175, 193, 343
TauI	GCSGC	2 cut(s)	8, 510
TfiI	GAWTC	1 cut(s)	286
TscAI	CASTG	1 cut(s)	487
TseI	GCWGC	1 cut(s)	413
TspDTI	ATGAA	2 cut(s)	187, 350
TspRI	CASTG	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	2 cut(s)	175, 343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.