Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012930

Physical Location & Seq

Genomic Coordinates Reverse (-)

1712123 .. 1715078

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g03220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCGACTCAGTTCCCGGAAGATTTCTTTTGCCCAATTTCGCTGGAAATAATGTCCGACCCGGTTATACTCCCTTCGGGTCACACCTTCGACCGGCCCAGCATCCAACGCTGGCTCGACGCCGGCCACCGTACTTGTCCACTTACCAAACTACCCCTCCCTGAACACCCTTCCCTAATCCCCAACCACGCCCTCCGCAGCTTAATTTCCAATTATACCCTCCCCTCTCCTACACCGCAGCCCCACCGCAACCAGAGCCACCACAACCCCTCCCAGCCCCAAACCCTAATCTCCACCCTCACTTCACCGGCGTCGAGCCTCGACTCCAAGCTCGACTCGCTCGACCGGCTCAACAAGACGGCCAAGGACGACGCGGCGTTCCGCCTCAAGCTGACGGAGTTCGGCGCCGTCGCCGCCGGTCTGAAGTGCCTGGACTCCGGCGAGCCGTGCCTGCAGGCGAAGGCTCTGACTTTGCTGCTGAATGTTAGCCTGGACGACGACGGCAACAAGGTGGGGATGGTAGCCGAGGGAGTGCTCGACAGAGTCGTGGCGGTGCTGCAAGGCGGCTTGCCGAAGAGCCGCGCCGTGGCGGCGACGGTGTTGACCAGCCTGGCCCTCGTGGAGGTCAACAAGGGCACAATTGGGGCGGATCCGTATGTGATTCCGGCTCTTGTTTCGCTTCTCCGGGACGGCAAGTGGCCGGAGAAGAAAGAGGCGGCGACGGCGCTTCATACTCTCTGTTCTTTTTCTGATAATCGGCGGCGGGCGGTGGAGTGCGGTGCGGTTGCGATTTTGCTCCGAATTGCGGATTCGGGTCTGGACCGGGCCGTTGAGGTTTTGGGCCAGCTGGCGAGAAGCAAGGATGGGAGAGAAGAGATGCAGAGGTTTAGTGGGTGTGTGAGGATTTTAGTGAGGGTTTTAGAGAATGGAACTACCAGAGGAGTTCAGCATGCTCTGCTCACATTGAGCTCGCTTTGCCGTTTCAGTGAGAAAATGCGTGTGGAAGCAAGAAACCAAGGGGTGTTAGCGATTTGTATGTGTTTGGTTGAAGTTGATAATGAAAAGATTAGAGAAAATGCTTGTTATTTGATTCAGGTCCTGGATGGGAACCATTCCATGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

375

Amino Acids

40.67

Weight (kDa)

7.12

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	6 - 72	6.3e-20	U-box domain
zf-RING_UBOX	PF13445	11 - 47	1.4e-07	RING-type zinc-finger
ARM_PUB	PF25598	109 - 369	2.4e-18	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21350
fragaria_vesca	FvH4_3g03220
malus_domestica	MD05G1334100.v1.1 MD10G1309000.v1.1
prunus_persica	Prupe.4G031100_v2.0.a1 Prupe.4G031100_v2.0.a1
pyrus_communis	pycom05g30580 pycom10g26040
rosa_chinensis	RchiOBHm_Chr5g0004861
rosa_laevigata	RLG00000031267
rosa_multiflora	Rmu_sc0010871.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070760
rosa_rugosa	Rorug04G0414800
rosa_samantha	Rh5AG042300 Rh5BG042000 Rh5CG045800 Rh5DG042400
rosa_wichuraiana	Rw5G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AccII	CGCG	2 cut(s)	374, 582
AclWI	GGATC	2 cut(s)	644, 657
AcoI	YGGCCR	3 cut(s)	124, 360, 698
AcuI	CTGAAG	1 cut(s)	443
AcyI	GRCGYC	3 cut(s)	120, 311, 405
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	4 cut(s)	93, 586, 622, 805
AgsI	TTSAA	1 cut(s)	1049
AjnI	CCWGG	4 cut(s)	429, 489, 609, 1098
AluBI	AGCT	5 cut(s)	201, 331, 391, 847, 969
AluI	AGCT	5 cut(s)	201, 331, 391, 847, 969
Alw21I	GWGCWC	2 cut(s)	537, 971
AlwI	GGATC	2 cut(s)	644, 657
AlwNI	CAGNNNCTG	1 cut(s)	1099
AoxI	GGCC	7 cut(s)	95, 124, 360, 612, 698, 825, 841
ApeKI	GCWGC	4 cut(s)	198, 238, 475, 556
AspLEI	GCGC	3 cut(s)	407, 584, 727
AspS9I	GGNCC	6 cut(s)	96, 613, 820, 825, 841, 1096
AsuC2I	CCSGG	4 cut(s)	17, 62, 686, 824
AsuHPI	GGTGA	1 cut(s)	297
AvaII	GGWCC	2 cut(s)	820, 1096
BaeGI	GKGCMC	1 cut(s)	638
BamHI	GGATCC	1 cut(s)	649
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	971
BauI	CACGAG	1 cut(s)	617
Bbv12I	GWGCWC	2 cut(s)	537, 971
BbvI	GCAGC	4 cut(s)	210, 250, 462, 543
BccI	CCATC	3 cut(s)	511, 857, 1097
BceAI	ACGGC	9 cut(s)	375, 392, 430, 517, 569, 706, 738, 812, 963
BciT130I	CCWGG	4 cut(s)	431, 491, 611, 1100
BcnI	CCSGG	4 cut(s)	17, 62, 686, 824
BfmI	CTRYAG	1 cut(s)	452
BfoI	RGCGCY	2 cut(s)	408, 728
BglI	GCCNNNNNGGC	1 cut(s)	590
Bme1390I	CCNGG	8 cut(s)	17, 62, 431, 491, 611, 686, 824, 1100
Bme18I	GGWCC	2 cut(s)	820, 1096
BmgT120I	GGNCC	6 cut(s)	96, 613, 820, 825, 841, 1096
BmiI	GGNNCC	3 cut(s)	406, 651, 1109
BmrFI	CCNGG	8 cut(s)	17, 62, 431, 491, 611, 686, 824, 1100
BmsI	GCATC	2 cut(s)	111, 867
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	4 cut(s)	17, 62, 686, 824
BsaHI	GRCGYC	3 cut(s)	120, 311, 405
BsaJI	CCNNGG	4 cut(s)	363, 525, 585, 1015
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 254, 284
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 586, 622, 805
Bse118I	RCCGGY	5 cut(s)	93, 122, 307, 345, 416
BseBI	CCWGG	4 cut(s)	431, 491, 611, 1100
BseDI	CCNNGG	4 cut(s)	363, 525, 585, 1015
BseGI	GGATG	4 cut(s)	102, 522, 868, 1108
BseLI	CCNNNNNNNGG	4 cut(s)	93, 586, 622, 805
BseMII	CTCAG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	954
BseSI	GKGCMC	1 cut(s)	638
BseXI	GCAGC	4 cut(s)	210, 250, 462, 543
BseYI	CCCAGC	2 cut(s)	98, 273
Bsh1236I	CGCG	2 cut(s)	374, 582
Bsh1285I	CGRYCG	2 cut(s)	94, 346
BshFI	GGCC	7 cut(s)	97, 126, 362, 614, 700, 827, 843
BshNI	GGYRCC	1 cut(s)	404
BsiEI	CGRYCG	2 cut(s)	94, 346
BsiHKAI	GWGCWC	2 cut(s)	537, 971
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	4 cut(s)	93, 586, 622, 805
BsmFI	GGGAC	1 cut(s)	701
BsnI	GGCC	7 cut(s)	97, 126, 362, 614, 700, 827, 843
Bsp1286I	GDGCHC	3 cut(s)	537, 638, 971
Bsp143I	GATC	1 cut(s)	649
BspANI	GGCC	7 cut(s)	97, 126, 362, 614, 700, 827, 843
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	2 cut(s)	374, 582
BspLI	GGNNCC	3 cut(s)	406, 651, 1109
BspMAI	CTGCAG	1 cut(s)	456
BspPI	GGATC	2 cut(s)	644, 657
BspQI	GCTCTTC	1 cut(s)	569
BspT107I	GGYRCC	1 cut(s)	404
BsrFI	RCCGGY	5 cut(s)	93, 122, 307, 345, 416
BssAI	RCCGGY	5 cut(s)	93, 122, 307, 345, 416
BssECI	CCNNGG	4 cut(s)	363, 525, 585, 1015
BssMI	GATC	1 cut(s)	649
BssNI	GRCGYC	3 cut(s)	120, 311, 405
BssSI	CACGAG	1 cut(s)	617
BssT1I	CCWWGG	2 cut(s)	363, 1015
Bst2BI	CACGAG	1 cut(s)	617
Bst2UI	CCWGG	4 cut(s)	431, 491, 611, 1100
Bst4CI	ACNGT	2 cut(s)	131, 598
Bst6I	CTCTTC	2 cut(s)	569, 867
BstACI	GRCGYC	3 cut(s)	120, 311, 405
BstAPI	GCANNNNNTGC	1 cut(s)	955
BstDEI	CTNAG	1 cut(s)	9
BstDSI	CCRYGG	1 cut(s)	585
BstENI	CCTNNNNNAGG	1 cut(s)	620
BstF5I	GGATG	4 cut(s)	102, 522, 868, 1108
BstFNI	CGCG	2 cut(s)	374, 582
BstH2I	RGCGCY	2 cut(s)	408, 728
BstHHI	GCGC	3 cut(s)	407, 584, 727
BstKTI	GATC	1 cut(s)	652
BstMBI	GATC	1 cut(s)	649
BstMCI	CGRYCG	2 cut(s)	94, 346
BstNI	CCWGG	4 cut(s)	431, 491, 611, 1100
BstNSI	RCATGY	1 cut(s)	953
BstSCI	CCNGG	8 cut(s)	15, 60, 429, 489, 609, 684, 822, 1098
BstSFI	CTRYAG	1 cut(s)	452
BstSLI	GKGCMC	1 cut(s)	638
BstUI	CGCG	2 cut(s)	374, 582
BstV1I	GCAGC	4 cut(s)	210, 250, 462, 543
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BsuRI	GGCC	7 cut(s)	97, 126, 362, 614, 700, 827, 843
BtgI	CCRYGG	1 cut(s)	585
BtsCI	GGATG	4 cut(s)	102, 522, 868, 1108
BtsIMutI	CAGTG	1 cut(s)	991
CaiI	CAGNNNCTG	1 cut(s)	1099
CfoI	GCGC	3 cut(s)	407, 584, 727
Cfr10I	RCCGGY	5 cut(s)	93, 122, 307, 345, 416
Cfr13I	GGNCC	6 cut(s)	96, 613, 820, 825, 841, 1096
CseI	GACGC	3 cut(s)	128, 300, 380
Csp6I	GTAC	1 cut(s)	132
CspCI	CAANNNNNGTGG	2 cut(s)	116, 151
CviAII	CATG	2 cut(s)	950, 1117
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	1 cut(s)	9
DinI	GGCGCC	1 cut(s)	406
DpnI	GATC	1 cut(s)	651
DpnII	GATC	1 cut(s)	649
EaeI	YGGCCR	3 cut(s)	124, 360, 698
Eam1104I	CTCTTC	2 cut(s)	569, 867
EarI	CTCTTC	2 cut(s)	569, 867
EciI	GGCGGA	2 cut(s)	371, 662
Ecl136II	GAGCTC	1 cut(s)	969
Eco130I	CCWWGG	2 cut(s)	363, 1015
Eco24I	GRGCYC	1 cut(s)	971
Eco47I	GGWCC	2 cut(s)	820, 1096
Eco53kI	GAGCTC	1 cut(s)	969
Eco57I	CTGAAG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	969
EcoNI	CCTNNNNNAGG	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	1096
EcoRII	CCWGG	4 cut(s)	429, 489, 609, 1098
EcoT14I	CCWWGG	2 cut(s)	363, 1015
EcoT38I	GRGCYC	1 cut(s)	971
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
ErhI	CCWWGG	2 cut(s)	363, 1015
FaeI	CATG	2 cut(s)	953, 1120
FaiI	YATR	7 cut(s)	68, 216, 657, 732, 951, 1037, 1118
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	2 cut(s)	949, 1116
FauI	CCCGC	1 cut(s)	756
FokI	GGATG	4 cut(s)	89, 529, 875, 1115
FriOI	GRGCYC	1 cut(s)	971
GlaI	GCGC	3 cut(s)	406, 583, 726
GsaI	CCCAGC	2 cut(s)	102, 277
HaeII	RGCGCY	2 cut(s)	408, 728
HaeIII	GGCC	7 cut(s)	97, 126, 362, 614, 700, 827, 843
HgaI	GACGC	3 cut(s)	128, 300, 380
HhaI	GCGC	3 cut(s)	407, 584, 727
Hin1I	GRCGYC	3 cut(s)	120, 311, 405
Hin1II	CATG	2 cut(s)	953, 1120
Hin6I	GCGC	3 cut(s)	405, 582, 725
HinP1I	GCGC	3 cut(s)	405, 582, 725
HincII	GTYRAC	2 cut(s)	603, 628
HindII	GTYRAC	2 cut(s)	603, 628
HinfI	GANTC	8 cut(s)	7, 323, 335, 434, 543, 661, 809, 1090
HphI	GGTGA	1 cut(s)	297
Hpy166II	GTNNAC	3 cut(s)	140, 603, 628
Hpy188I	TCNGA	5 cut(s)	58, 423, 468, 751, 800
Hpy188III	TCNNGA	1 cut(s)	818
Hpy8I	GTNNAC	3 cut(s)	140, 603, 628
Hpy99I	CGWCG	8 cut(s)	122, 316, 374, 413, 500, 503, 598, 724
HpyAV	CCTTC	4 cut(s)	84, 97, 180, 454
HpyCH4III	ACNGT	2 cut(s)	131, 598
HpyCH4V	TGCA	3 cut(s)	454, 559, 880
HpyF3I	CTNAG	1 cut(s)	9
Hsp92I	GRCGYC	3 cut(s)	120, 311, 405
Hsp92II	CATG	2 cut(s)	953, 1120
HspAI	GCGC	3 cut(s)	405, 582, 725
KasI	GGCGCC	1 cut(s)	404
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	649
LguI	GCTCTTC	1 cut(s)	569
LmnI	GCTCC	1 cut(s)	801
Lsp1109I	GCAGC	4 cut(s)	210, 250, 462, 543
LweI	GCATC	2 cut(s)	111, 867
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	1 cut(s)	651
MboI	GATC	1 cut(s)	649
MboII	GAAGA	4 cut(s)	32, 586, 718, 884
MfeI	CAATTG	1 cut(s)	639
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	3 cut(s)	537, 638, 971
MluCI	AATT	5 cut(s)	36, 204, 211, 639, 801
Mly113I	GGCGCC	1 cut(s)	405
MlyI	GAGTC	4 cut(s)	317, 329, 428, 552
MmeI	TCCRAC	2 cut(s)	81, 130
MroNI	GCCGGC	1 cut(s)	122
MseI	TTAA	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	847
MspR9I	CCNGG	8 cut(s)	17, 62, 431, 491, 611, 686, 824, 1100
MunI	CAATTG	1 cut(s)	639
MvaI	CCWGG	4 cut(s)	431, 491, 611, 1100
MvnI	CGCG	2 cut(s)	374, 582
NaeI	GCCGGC	1 cut(s)	124
NarI	GGCGCC	1 cut(s)	405
NciI	CCSGG	4 cut(s)	17, 62, 686, 824
NdeII	GATC	1 cut(s)	649
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	2 cut(s)	953, 1120
NlaIV	GGNNCC	3 cut(s)	406, 651, 1109
NmeAIII	GCCGAG	1 cut(s)	550
NmuCI	GTSAC	1 cut(s)	80
NspI	RCATGY	1 cut(s)	953
PaeI	GCATGC	1 cut(s)	953
PciSI	GCTCTTC	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	2 cut(s)	339, 543
PdiI	GCCGGC	1 cut(s)	124
PfeI	GAWTC	3 cut(s)	661, 809, 1090
PflFI	GACNNNGTC	1 cut(s)	542
PfoI	TCCNGGA	3 cut(s)	15, 684, 1098
PleI	GAGTC	4 cut(s)	317, 329, 428, 551
PluTI	GGCGCC	1 cut(s)	408
PpsI	GAGTC	4 cut(s)	317, 329, 428, 551
PpuMI	RGGWCCY	1 cut(s)	1096
Psp124BI	GAGCTC	1 cut(s)	971
Psp5II	RGGWCCY	1 cut(s)	1096
Psp6I	CCWGG	4 cut(s)	429, 489, 609, 1098
PspFI	CCCAGC	2 cut(s)	98, 273
PspGI	CCWGG	4 cut(s)	429, 489, 609, 1098
PspN4I	GGNNCC	3 cut(s)	406, 651, 1109
PspPI	GGNCC	6 cut(s)	96, 613, 820, 825, 841, 1096
PspPPI	RGGWCCY	1 cut(s)	1096
PstI	CTGCAG	1 cut(s)	456
PstNI	CAGNNNCTG	1 cut(s)	1099
PsuI	RGATCY	1 cut(s)	649
PsyI	GACNNNGTC	1 cut(s)	542
PvuII	CAGCTG	1 cut(s)	847
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	971
SapI	GCTCTTC	1 cut(s)	569
SaqAI	TTAA	1 cut(s)	203
Sau3AI	GATC	1 cut(s)	649
Sau96I	GGNCC	6 cut(s)	96, 613, 820, 825, 841, 1096
SbfI	CCTGCAGG	1 cut(s)	456
SchI	GAGTC	4 cut(s)	317, 329, 428, 552
ScrFI	CCNGG	8 cut(s)	17, 62, 431, 491, 611, 686, 824, 1100
SdaI	CCTGCAGG	1 cut(s)	456
SduI	GDGCHC	3 cut(s)	537, 638, 971
SfaNI	GCATC	2 cut(s)	111, 867
SfcI	CTRYAG	1 cut(s)	452
SfoI	GGCGCC	1 cut(s)	406
SgrAI	CRCCGGYG	1 cut(s)	307
SinI	GGWCC	2 cut(s)	820, 1096
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SphI	GCATGC	1 cut(s)	953
Sse8387I	CCTGCAGG	1 cut(s)	456
Sse9I	AATT	5 cut(s)	36, 204, 211, 639, 801
SspDI	GGCGCC	1 cut(s)	404
SstI	GAGCTC	1 cut(s)	971
StyD4I	CCNGG	8 cut(s)	15, 60, 429, 489, 609, 684, 822, 1098
StyI	CCWWGG	2 cut(s)	363, 1015
TaaI	ACNGT	2 cut(s)	131, 598
TaqI	TCGA	7 cut(s)	90, 117, 314, 321, 333, 342, 537
TasI	AATT	5 cut(s)	36, 204, 211, 639, 801
TauI	GCSGC	7 cut(s)	377, 416, 567, 582, 593, 719, 763
TfiI	GAWTC	3 cut(s)	661, 809, 1090
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	1 cut(s)	991
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	4 cut(s)	198, 238, 475, 556
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	719, 1074
TspGWI	ACGGA	2 cut(s)	410, 642
TspRI	CASTG	1 cut(s)	991
Tth111I	GACNNNGTC	1 cut(s)	542
VpaK11BI	GGWCC	2 cut(s)	820, 1096
XagI	CCTNNNNNAGG	1 cut(s)	620
XceI	RCATGY	1 cut(s)	953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.