pycom05g30580

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
30653492 .. 30656123
2632 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g30580.2

Sequence Viewer

Length: 1203 bp
ATGGCGACTCAGTTCCCGGACGATTTCAAGTGCCCGATTTCCCTCGAAATAATGTCCGACCCTGTTATACTCTCCTCGGGTCACACCTTTGATCGGGCCTCCATCCAACGCTGGCTCGACGCCGGCCACCGTACCTGCCCAATCACCAAACTGCCCCTCCCCGAACACCCTTCCCTCATCCCCAACCACGCCCTCCGCAGCCTGATTTCCACTTATACCCTTCTCTCCCCTGCCAAATTACAACACCAGTATCACCACCACCACCACCAATACCATCACCACTGCCAGCAGCGCCACTCCCAGCCCCAAAACCCAATATCGACGCTTACCTCTCCAGCTTCCACCCTCGAGTCCAAGCTCGAATCGCTCGACCAGCTCACTCGCCTCTCCAAGCGCGACGCCGCCTTTCGCGCCAAGCTCACTGAGTCCGGCGCCGTCTCCACCGTCCTCAAGTGCGTCGACTCGGAGGAGCCCCGCCTCCAAGAAAAGGCGCTGACTTTGCTGCTCAATGTCAGCTTGGACGACGATAACAAAGTGGGTCTTGTCGCCGAGGGAGCAATCGCTCGAATCGTGGAGGTGCTCCAAGGTGGGTCCCCCAACAGCCGTGCCGTGGCAGCGACGATGTTGACGAGCTTGGCAGTGGTGGAGGTCAACAAGGCCACAATCGGGGCATACCCGTGTGCAATTCGGGCTCTAGTTTCGCTTCTCGGGGACGGCAAAAGTCGAGAGCAGAAAGAGGCGGCCACGGCGCTTTACACCATCTGTTTGTTCCCGGATAACCGGCGGCGGGCTGTGGAATGTGGGGTGGTGTCGATTTTGATCCGAATTGCTGAATCGGGCCTCGAACGGGCGGTTGAAGTTCTGGGTCTTTTGGCAAAGTGCAAGGAAGGTAGAGAAGAGATGGAGAGGTTTAATGGTTGTGTGGGGATTTTAGTGAGGGTTTTAGAAAATGGGAGCTCCAGGGGAGTTCAGTATGCCCTGCTTACTTTGAATTTGCTTTGTTCTTATAGCGAACAAATGCGTGTGGAAGCGAAAAATGAAGGGGCTTTGGCAATTTGTGTAGGTTTGGTTGAAGATGATAATGAAAGGATTGGAAAAAATGCTTCTAATTTGGTTCAGATTCTCAGTGGGAACCAATCCATGAGCGTGAGGGGAGTTTGCTCAAGTAATTCATATCTTTCATGTGAGTCGCTAGCAAGTTAA

Protein Analysis

401

Amino Acids

43.61

Weight (kDa)

6.7

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012930)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 431
AccI GTMKAC 1 cut(s) 459
AccII CGCG 2 cut(s) 396, 411
AciI CCGC 7 cut(s) 196, 402, 475, 740, 784, 787, 851
AclWI GGATC 1 cut(s) 814
AcoI YGGCCR 2 cut(s) 124, 741
AcsI RAATTY 1 cut(s) 991
AcyI GRCGYC 3 cut(s) 120, 399, 432
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 6 cut(s) 93, 487, 610, 666, 787, 847
AgsI TTSAA 4 cut(s) 28, 857, 991, 1073
AjnI CCWGG 1 cut(s) 959
AluBI AGCT 7 cut(s) 338, 358, 376, 418, 516, 633, 957
AluI AGCT 7 cut(s) 338, 358, 376, 418, 516, 633, 957
Alw21I GWGCWC 2 cut(s) 582, 959
Alw26I GTCTC 1 cut(s) 442
AlwI GGATC 1 cut(s) 814
Ama87I CYCGRG 3 cut(s) 76, 347, 707
AoxI GGCC 5 cut(s) 96, 124, 657, 741, 838
ApeKI GCWGC 4 cut(s) 198, 289, 502, 614
ApoI RAATTY 1 cut(s) 991
AspLEI GCGC 6 cut(s) 294, 396, 413, 434, 493, 751
AspS9I GGNCC 3 cut(s) 96, 591, 838
AsuC2I CCSGG 2 cut(s) 17, 773
AsuHPI GGTGA 3 cut(s) 136, 245, 269
AsuNHI GCTAGC 1 cut(s) 1192
AvaI CYCGRG 3 cut(s) 76, 347, 707
AvaII GGWCC 1 cut(s) 591
BaeGI GKGCMC 1 cut(s) 35
BaeI ACNNNNGTAYC 2 cut(s) 233, 266
BanI GGYRCC 1 cut(s) 431
BanII GRGCYC 3 cut(s) 474, 694, 959
Bbv12I GWGCWC 2 cut(s) 582, 959
BbvI GCAGC 4 cut(s) 210, 301, 489, 626
BccI CCATC 4 cut(s) 110, 282, 767, 895
BceAI ACGGC 5 cut(s) 419, 588, 593, 730, 762
BciT130I CCWGG 1 cut(s) 961
BcnI CCSGG 2 cut(s) 17, 773
BcoDI GTCTC 1 cut(s) 442
BfaI CTAG 2 cut(s) 695, 1193
BfoI RGCGCY 4 cut(s) 295, 435, 494, 752
BfuAI ACCTGC 1 cut(s) 143
BisI GCNGC 7 cut(s) 199, 290, 402, 503, 615, 741, 785
BlsI GCNGC 7 cut(s) 200, 291, 403, 504, 616, 742, 786
Bme1390I CCNGG 3 cut(s) 17, 773, 961
Bme18I GGWCC 1 cut(s) 591
BmeT110I CYCGRG 3 cut(s) 76, 347, 707
BmgT120I GGNCC 3 cut(s) 96, 591, 838
BmiI GGNNCC 5 cut(s) 433, 471, 592, 593, 1133
BmrFI CCNGG 3 cut(s) 17, 773, 961
BmtI GCTAGC 1 cut(s) 1196
BpmI CTGGAG 2 cut(s) 318, 943
BpuEI CTTGAG 2 cut(s) 434, 1147
BpuMI CCSGG 2 cut(s) 17, 773
BsaBI GATNNNNATC 1 cut(s) 818
BsaHI GRCGYC 3 cut(s) 120, 399, 432
BsaJI CCNNGG 6 cut(s) 75, 549, 583, 609, 744, 960
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 6 cut(s) 93, 487, 610, 666, 787, 847
Bse118I RCCGGY 2 cut(s) 122, 780
Bse1I ACTGG 1 cut(s) 247
Bse8I GATNNNNATC 1 cut(s) 818
BseBI CCWGG 1 cut(s) 961
BseDI CCNNGG 6 cut(s) 75, 549, 583, 609, 744, 960
BseGI GGATG 2 cut(s) 102, 177
BseJI GATNNNNATC 1 cut(s) 818
BseLI CCNNNNNNNGG 6 cut(s) 93, 487, 610, 666, 787, 847
BseMII CTCAG 3 cut(s) 23, 414, 1138
BseNI ACTGG 1 cut(s) 247
BseRI GAGGAG 2 cut(s) 64, 482
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 4 cut(s) 210, 301, 489, 626
BseYI CCCAGC 1 cut(s) 300
Bsh1236I CGCG 2 cut(s) 396, 411
BshFI GGCC 5 cut(s) 98, 126, 659, 743, 840
BshNI GGYRCC 1 cut(s) 431
BsiHKAI GWGCWC 2 cut(s) 582, 959
BsiHKCI CYCGRG 3 cut(s) 76, 347, 707
BsiSI CCGG 5 cut(s) 17, 123, 429, 773, 781
BslFI GGGAC 2 cut(s) 577, 725
BslI CCNNNNNNNGG 6 cut(s) 93, 487, 610, 666, 787, 847
BsmAI GTCTC 1 cut(s) 442
BsmBI CGTCTC 1 cut(s) 442
BsmFI GGGAC 2 cut(s) 577, 725
BsnI GGCC 5 cut(s) 98, 126, 659, 743, 840
BsoBI CYCGRG 3 cut(s) 76, 347, 707
Bsp1286I GDGCHC 5 cut(s) 35, 474, 582, 694, 959
Bsp143I GATC 2 cut(s) 91, 819
BspACI CCGC 7 cut(s) 196, 402, 475, 740, 784, 787, 851
BspANI GGCC 5 cut(s) 98, 126, 659, 743, 840
BspCNI CTCAG 3 cut(s) 22, 415, 1137
BspFNI CGCG 2 cut(s) 396, 411
BspLI GGNNCC 5 cut(s) 433, 471, 592, 593, 1133
BspMI ACCTGC 1 cut(s) 143
BspOI GCTAGC 1 cut(s) 1196
BspPI GGATC 1 cut(s) 814
BspT107I GGYRCC 1 cut(s) 431
BsrFI RCCGGY 2 cut(s) 122, 780
BsrI ACTGG 1 cut(s) 247
BssAI RCCGGY 2 cut(s) 122, 780
BssECI CCNNGG 6 cut(s) 75, 549, 583, 609, 744, 960
BssMI GATC 2 cut(s) 91, 819
BssNI GRCGYC 3 cut(s) 120, 399, 432
BssT1I CCWWGG 1 cut(s) 583
Bst2UI CCWGG 1 cut(s) 961
Bst4CI ACNGT 2 cut(s) 131, 445
Bst6I CTCTTC 1 cut(s) 891
BstACI GRCGYC 3 cut(s) 120, 399, 432
BstC8I GCNNGC 5 cut(s) 113, 124, 287, 789, 1194
BstDEI CTNAG 3 cut(s) 9, 423, 1124
BstDSI CCRYGG 2 cut(s) 609, 744
BstF5I GGATG 2 cut(s) 102, 177
BstFNI CGCG 2 cut(s) 396, 411
BstH2I RGCGCY 4 cut(s) 295, 435, 494, 752
BstHHI GCGC 6 cut(s) 294, 396, 413, 434, 493, 751
BstKTI GATC 2 cut(s) 94, 822
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 2 cut(s) 91, 819
BstMWI GCNNNNNNNGC 9 cut(s) 291, 364, 373, 410, 499, 554, 614, 689, 746
BstNI CCWGG 1 cut(s) 961
BstSCI CCNGG 3 cut(s) 15, 771, 959
BstSLI GKGCMC 1 cut(s) 35
BstUI CGCG 2 cut(s) 396, 411
BstV1I GCAGC 4 cut(s) 210, 301, 489, 626
BsuRI GGCC 5 cut(s) 98, 126, 659, 743, 840
BtgI CCRYGG 2 cut(s) 609, 744
BtsCI GGATG 2 cut(s) 102, 177
BtsI GCAGTG 2 cut(s) 280, 645
BtsIMutI CAGTG 4 cut(s) 280, 420, 645, 1132
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 5 cut(s) 113, 124, 287, 789, 1194
CfoI GCGC 6 cut(s) 294, 396, 413, 434, 493, 751
Cfr10I RCCGGY 2 cut(s) 122, 780
Cfr13I GGNCC 3 cut(s) 96, 591, 838
CseI GACGC 4 cut(s) 128, 331, 407, 445
Csp6I GTAC 1 cut(s) 132
CviAII CATG 2 cut(s) 1141, 1182
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 3 cut(s) 9, 423, 1124
DinI GGCGCC 1 cut(s) 433
DpnI GATC 2 cut(s) 93, 821
DpnII GATC 2 cut(s) 91, 819
EaeI YGGCCR 2 cut(s) 124, 741
Eam1104I CTCTTC 1 cut(s) 891
EarI CTCTTC 1 cut(s) 891
Ecl136II GAGCTC 1 cut(s) 957
Eco130I CCWWGG 1 cut(s) 583
Eco24I GRGCYC 3 cut(s) 474, 694, 959
Eco47I GGWCC 1 cut(s) 591
Eco53kI GAGCTC 1 cut(s) 957
Eco88I CYCGRG 3 cut(s) 76, 347, 707
EcoICRI GAGCTC 1 cut(s) 957
EcoO109I RGGNCCY 1 cut(s) 591
EcoRII CCWGG 1 cut(s) 959
EcoT14I CCWWGG 1 cut(s) 583
EcoT38I GRGCYC 3 cut(s) 474, 694, 959
EgeI GGCGCC 1 cut(s) 433
EheI GGCGCC 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 583
Esp3I CGTCTC 1 cut(s) 442
FaeI CATG 2 cut(s) 1144, 1185
FaiI YATR 8 cut(s) 68, 216, 673, 975, 1008, 1142, 1174, 1183
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FaqI GGGAC 2 cut(s) 577, 725
FatI CATG 2 cut(s) 1140, 1181
FauI CCCGC 2 cut(s) 482, 780
FblI GTMKAC 1 cut(s) 459
Fnu4HI GCNGC 7 cut(s) 199, 290, 402, 503, 615, 741, 785
FokI GGATG 2 cut(s) 89, 164
FriOI GRGCYC 3 cut(s) 474, 694, 959
Fsp4HI GCNGC 7 cut(s) 199, 290, 402, 503, 615, 741, 785
FspBI CTAG 2 cut(s) 695, 1193
GlaI GCGC 6 cut(s) 293, 395, 412, 433, 492, 750
GluI GCNGC 7 cut(s) 199, 290, 402, 503, 615, 741, 785
GsaI CCCAGC 1 cut(s) 304
GsuI CTGGAG 2 cut(s) 318, 943
HaeII RGCGCY 4 cut(s) 295, 435, 494, 752
HaeIII GGCC 5 cut(s) 98, 126, 659, 743, 840
HapII CCGG 5 cut(s) 17, 123, 429, 773, 781
HgaI GACGC 4 cut(s) 128, 331, 407, 445
HhaI GCGC 6 cut(s) 294, 396, 413, 434, 493, 751
Hin1I GRCGYC 3 cut(s) 120, 399, 432
Hin1II CATG 2 cut(s) 1144, 1185
Hin6I GCGC 6 cut(s) 292, 394, 411, 432, 491, 749
HinP1I GCGC 6 cut(s) 292, 394, 411, 432, 491, 749
HincII GTYRAC 3 cut(s) 460, 627, 652
HindII GTYRAC 3 cut(s) 460, 627, 652
HinfI GANTC 9 cut(s) 7, 350, 362, 425, 461, 567, 833, 1120, 1187
HpaII CCGG 5 cut(s) 17, 123, 429, 773, 781
HphI GGTGA 3 cut(s) 136, 245, 269
Hpy166II GTNNAC 3 cut(s) 460, 627, 652
Hpy188I TCNGA 4 cut(s) 58, 466, 824, 1119
Hpy188III TCNNGA 1 cut(s) 725
Hpy8I GTNNAC 3 cut(s) 460, 627, 652
Hpy99I CGWCG 6 cut(s) 122, 325, 401, 461, 527, 622
HpyAV CCTTC 4 cut(s) 180, 230, 881, 1034
HpyCH4III ACNGT 2 cut(s) 131, 445
HpyCH4V TGCA 2 cut(s) 683, 882
HpyF10VI GCNNNNNNNGC 9 cut(s) 291, 364, 373, 410, 499, 554, 614, 689, 746
HpyF3I CTNAG 3 cut(s) 9, 423, 1124
Hsp92I GRCGYC 3 cut(s) 120, 399, 432
Hsp92II CATG 2 cut(s) 1144, 1185
HspAI GCGC 6 cut(s) 292, 394, 411, 432, 491, 749
KasI GGCGCC 1 cut(s) 431
KflI GGGWCCC 1 cut(s) 591
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Kzo9I GATC 2 cut(s) 91, 819
LmnI GCTCC 5 cut(s) 469, 554, 585, 954, 962
Lsp1109I GCAGC 4 cut(s) 210, 301, 489, 626
MaeI CTAG 2 cut(s) 695, 1193
MaeIII GTNAC 1 cut(s) 80
MalI GATC 2 cut(s) 93, 821
MboI GATC 2 cut(s) 91, 819
MboII GAAGA 2 cut(s) 908, 1085
MhlI GDGCHC 5 cut(s) 35, 474, 582, 694, 959
MluCI AATT 7 cut(s) 236, 684, 825, 991, 1053, 1108, 1168
Mly113I GGCGCC 1 cut(s) 432
MlyI GAGTC 4 cut(s) 359, 434, 455, 1196
MmeI TCCRAC 2 cut(s) 81, 130
MroNI GCCGGC 1 cut(s) 122
MseI TTAA 2 cut(s) 912, 1201
MslI CAYNNNNRTG 2 cut(s) 676, 1145
MspI CCGG 5 cut(s) 17, 123, 429, 773, 781
MspR9I CCNGG 3 cut(s) 17, 773, 961
MvaI CCWGG 1 cut(s) 961
MvnI CGCG 2 cut(s) 396, 411
MwoI GCNNNNNNNGC 9 cut(s) 291, 364, 373, 410, 499, 554, 614, 689, 746
NaeI GCCGGC 1 cut(s) 124
NarI GGCGCC 1 cut(s) 432
NciI CCSGG 2 cut(s) 17, 773
NdeII GATC 2 cut(s) 91, 819
NgoMIV GCCGGC 1 cut(s) 122
NheI GCTAGC 1 cut(s) 1192
NlaIII CATG 2 cut(s) 1144, 1185
NlaIV GGNNCC 5 cut(s) 433, 471, 592, 593, 1133
NmeAIII GCCGAG 1 cut(s) 574
NmuCI GTSAC 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 347
PcsI WCGNNNNNNNCGW 3 cut(s) 366, 567, 626
PdiI GCCGGC 1 cut(s) 124
PfeI GAWTC 4 cut(s) 362, 567, 833, 1120
PfoI TCCNGGA 2 cut(s) 15, 771
PkrI GCNGC 7 cut(s) 200, 291, 403, 504, 616, 742, 786
PleI GAGTC 4 cut(s) 358, 433, 455, 1195
PluTI GGCGCC 1 cut(s) 435
PpsI GAGTC 4 cut(s) 358, 433, 455, 1195
PpuMI RGGWCCY 1 cut(s) 591
Psp124BI GAGCTC 1 cut(s) 959
Psp5II RGGWCCY 1 cut(s) 591
Psp6I CCWGG 1 cut(s) 959
PspFI CCCAGC 1 cut(s) 300
PspGI CCWGG 1 cut(s) 959
PspN4I GGNNCC 5 cut(s) 433, 471, 592, 593, 1133
PspPI GGNCC 3 cut(s) 96, 591, 838
PspPPI RGGWCCY 1 cut(s) 591
PspXI VCTCGAGB 1 cut(s) 347
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
RseI CAYNNNNRTG 2 cut(s) 676, 1145
SacI GAGCTC 1 cut(s) 959
SalI GTCGAC 1 cut(s) 458
SaqAI TTAA 2 cut(s) 912, 1201
SatI GCNGC 7 cut(s) 199, 290, 402, 503, 615, 741, 785
Sau3AI GATC 2 cut(s) 91, 819
Sau96I GGNCC 3 cut(s) 96, 591, 838
SchI GAGTC 4 cut(s) 359, 434, 455, 1196
ScrFI CCNGG 3 cut(s) 17, 773, 961
SduI GDGCHC 5 cut(s) 35, 474, 582, 694, 959
SfoI GGCGCC 1 cut(s) 433
Sfr274I CTCGAG 1 cut(s) 347
SinI GGWCC 1 cut(s) 591
SlaI CTCGAG 1 cut(s) 347
SmiMI CAYNNNNRTG 2 cut(s) 676, 1145
SmlI CTYRAG 3 cut(s) 347, 449, 1162
SmoI CTYRAG 3 cut(s) 347, 449, 1162
Sse9I AATT 7 cut(s) 236, 684, 825, 991, 1053, 1108, 1168
SsiI CCGC 7 cut(s) 196, 402, 475, 740, 784, 787, 851
SspDI GGCGCC 1 cut(s) 431
SspMI CTAG 2 cut(s) 695, 1193
SstI GAGCTC 1 cut(s) 959
StyD4I CCNGG 3 cut(s) 15, 771, 959
StyI CCWWGG 1 cut(s) 583
TaaI ACNGT 2 cut(s) 131, 445
TasI AATT 7 cut(s) 236, 684, 825, 991, 1053, 1108, 1168
TauI GCSGC 3 cut(s) 404, 743, 787
TfiI GAWTC 4 cut(s) 362, 567, 833, 1120
Tru1I TTAA 2 cut(s) 912, 1201
Tru9I TTAA 2 cut(s) 912, 1201
TscAI CASTG 4 cut(s) 287, 427, 645, 1132
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 4 cut(s) 198, 289, 502, 614
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 4 cut(s) 1053, 1098, 1161, 1170
TspRI CASTG 4 cut(s) 287, 427, 645, 1132
VpaK11BI GGWCC 1 cut(s) 591
XapI RAATTY 1 cut(s) 991
XhoI CTCGAG 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 459
XspI CTAG 2 cut(s) 695, 1193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.