RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G21350 |
| fragaria_vesca | FvH4_3g03220 |
| malus_domestica | MD05G1334100.v1.1 MD10G1309000.v1.1 |
| prunus_persica | Prupe.4G031100_v2.0.a1 Prupe.4G031100_v2.0.a1 |
| pyrus_communis | pycom05g30580 pycom10g26040 |
| rosa_chinensis | RchiOBHm_Chr5g0004861 |
| rosa_laevigata | RLG00000031267 |
| rosa_multiflora | Rmu_sc0010871.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00070760 |
| rosa_rugosa | Rorug04G0414800 |
| rosa_samantha | Rh5AG042300 Rh5BG042000 Rh5CG045800 Rh5DG042400 |
| rosa_wichuraiana | Rw5G004090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 143 |
| AccB1I | GGYRCC | 1 cut(s) | 431 |
| AccI | GTMKAC | 1 cut(s) | 459 |
| AccII | CGCG | 2 cut(s) | 396, 411 |
| AciI | CCGC | 7 cut(s) | 196, 402, 475, 740, 784, 787, 851 |
| AclWI | GGATC | 1 cut(s) | 814 |
| AcoI | YGGCCR | 2 cut(s) | 124, 741 |
| AcsI | RAATTY | 1 cut(s) | 991 |
| AcyI | GRCGYC | 3 cut(s) | 120, 399, 432 |
| AfaI | GTAC | 1 cut(s) | 133 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 93, 487, 610, 666, 787, 847 |
| AgsI | TTSAA | 4 cut(s) | 28, 857, 991, 1073 |
| AjnI | CCWGG | 1 cut(s) | 959 |
| AluBI | AGCT | 7 cut(s) | 338, 358, 376, 418, 516, 633, 957 |
| AluI | AGCT | 7 cut(s) | 338, 358, 376, 418, 516, 633, 957 |
| Alw21I | GWGCWC | 2 cut(s) | 582, 959 |
| Alw26I | GTCTC | 1 cut(s) | 442 |
| AlwI | GGATC | 1 cut(s) | 814 |
| Ama87I | CYCGRG | 3 cut(s) | 76, 347, 707 |
| AoxI | GGCC | 5 cut(s) | 96, 124, 657, 741, 838 |
| ApeKI | GCWGC | 4 cut(s) | 198, 289, 502, 614 |
| ApoI | RAATTY | 1 cut(s) | 991 |
| AspLEI | GCGC | 6 cut(s) | 294, 396, 413, 434, 493, 751 |
| AspS9I | GGNCC | 3 cut(s) | 96, 591, 838 |
| AsuC2I | CCSGG | 2 cut(s) | 17, 773 |
| AsuHPI | GGTGA | 3 cut(s) | 136, 245, 269 |
| AsuNHI | GCTAGC | 1 cut(s) | 1192 |
| AvaI | CYCGRG | 3 cut(s) | 76, 347, 707 |
| AvaII | GGWCC | 1 cut(s) | 591 |
| BaeGI | GKGCMC | 1 cut(s) | 35 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 233, 266 |
| BanI | GGYRCC | 1 cut(s) | 431 |
| BanII | GRGCYC | 3 cut(s) | 474, 694, 959 |
| Bbv12I | GWGCWC | 2 cut(s) | 582, 959 |
| BbvI | GCAGC | 4 cut(s) | 210, 301, 489, 626 |
| BccI | CCATC | 4 cut(s) | 110, 282, 767, 895 |
| BceAI | ACGGC | 5 cut(s) | 419, 588, 593, 730, 762 |
| BciT130I | CCWGG | 1 cut(s) | 961 |
| BcnI | CCSGG | 2 cut(s) | 17, 773 |
| BcoDI | GTCTC | 1 cut(s) | 442 |
| BfaI | CTAG | 2 cut(s) | 695, 1193 |
| BfoI | RGCGCY | 4 cut(s) | 295, 435, 494, 752 |
| BfuAI | ACCTGC | 1 cut(s) | 143 |
| BisI | GCNGC | 7 cut(s) | 199, 290, 402, 503, 615, 741, 785 |
| BlsI | GCNGC | 7 cut(s) | 200, 291, 403, 504, 616, 742, 786 |
| Bme1390I | CCNGG | 3 cut(s) | 17, 773, 961 |
| Bme18I | GGWCC | 1 cut(s) | 591 |
| BmeT110I | CYCGRG | 3 cut(s) | 76, 347, 707 |
| BmgT120I | GGNCC | 3 cut(s) | 96, 591, 838 |
| BmiI | GGNNCC | 5 cut(s) | 433, 471, 592, 593, 1133 |
| BmrFI | CCNGG | 3 cut(s) | 17, 773, 961 |
| BmtI | GCTAGC | 1 cut(s) | 1196 |
| BpmI | CTGGAG | 2 cut(s) | 318, 943 |
| BpuEI | CTTGAG | 2 cut(s) | 434, 1147 |
| BpuMI | CCSGG | 2 cut(s) | 17, 773 |
| BsaBI | GATNNNNATC | 1 cut(s) | 818 |
| BsaHI | GRCGYC | 3 cut(s) | 120, 399, 432 |
| BsaJI | CCNNGG | 6 cut(s) | 75, 549, 583, 609, 744, 960 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 141, 171 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 93, 487, 610, 666, 787, 847 |
| Bse118I | RCCGGY | 2 cut(s) | 122, 780 |
| Bse1I | ACTGG | 1 cut(s) | 247 |
| Bse8I | GATNNNNATC | 1 cut(s) | 818 |
| BseBI | CCWGG | 1 cut(s) | 961 |
| BseDI | CCNNGG | 6 cut(s) | 75, 549, 583, 609, 744, 960 |
| BseGI | GGATG | 2 cut(s) | 102, 177 |
| BseJI | GATNNNNATC | 1 cut(s) | 818 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 93, 487, 610, 666, 787, 847 |
| BseMII | CTCAG | 3 cut(s) | 23, 414, 1138 |
| BseNI | ACTGG | 1 cut(s) | 247 |
| BseRI | GAGGAG | 2 cut(s) | 64, 482 |
| BseSI | GKGCMC | 1 cut(s) | 35 |
| BseXI | GCAGC | 4 cut(s) | 210, 301, 489, 626 |
| BseYI | CCCAGC | 1 cut(s) | 300 |
| Bsh1236I | CGCG | 2 cut(s) | 396, 411 |
| BshFI | GGCC | 5 cut(s) | 98, 126, 659, 743, 840 |
| BshNI | GGYRCC | 1 cut(s) | 431 |
| BsiHKAI | GWGCWC | 2 cut(s) | 582, 959 |
| BsiHKCI | CYCGRG | 3 cut(s) | 76, 347, 707 |
| BsiSI | CCGG | 5 cut(s) | 17, 123, 429, 773, 781 |
| BslFI | GGGAC | 2 cut(s) | 577, 725 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 93, 487, 610, 666, 787, 847 |
| BsmAI | GTCTC | 1 cut(s) | 442 |
| BsmBI | CGTCTC | 1 cut(s) | 442 |
| BsmFI | GGGAC | 2 cut(s) | 577, 725 |
| BsnI | GGCC | 5 cut(s) | 98, 126, 659, 743, 840 |
| BsoBI | CYCGRG | 3 cut(s) | 76, 347, 707 |
| Bsp1286I | GDGCHC | 5 cut(s) | 35, 474, 582, 694, 959 |
| Bsp143I | GATC | 2 cut(s) | 91, 819 |
| BspACI | CCGC | 7 cut(s) | 196, 402, 475, 740, 784, 787, 851 |
| BspANI | GGCC | 5 cut(s) | 98, 126, 659, 743, 840 |
| BspCNI | CTCAG | 3 cut(s) | 22, 415, 1137 |
| BspFNI | CGCG | 2 cut(s) | 396, 411 |
| BspLI | GGNNCC | 5 cut(s) | 433, 471, 592, 593, 1133 |
| BspMI | ACCTGC | 1 cut(s) | 143 |
| BspOI | GCTAGC | 1 cut(s) | 1196 |
| BspPI | GGATC | 1 cut(s) | 814 |
| BspT107I | GGYRCC | 1 cut(s) | 431 |
| BsrFI | RCCGGY | 2 cut(s) | 122, 780 |
| BsrI | ACTGG | 1 cut(s) | 247 |
| BssAI | RCCGGY | 2 cut(s) | 122, 780 |
| BssECI | CCNNGG | 6 cut(s) | 75, 549, 583, 609, 744, 960 |
| BssMI | GATC | 2 cut(s) | 91, 819 |
| BssNI | GRCGYC | 3 cut(s) | 120, 399, 432 |
| BssT1I | CCWWGG | 1 cut(s) | 583 |
| Bst2UI | CCWGG | 1 cut(s) | 961 |
| Bst4CI | ACNGT | 2 cut(s) | 131, 445 |
| Bst6I | CTCTTC | 1 cut(s) | 891 |
| BstACI | GRCGYC | 3 cut(s) | 120, 399, 432 |
| BstC8I | GCNNGC | 5 cut(s) | 113, 124, 287, 789, 1194 |
| BstDEI | CTNAG | 3 cut(s) | 9, 423, 1124 |
| BstDSI | CCRYGG | 2 cut(s) | 609, 744 |
| BstF5I | GGATG | 2 cut(s) | 102, 177 |
| BstFNI | CGCG | 2 cut(s) | 396, 411 |
| BstH2I | RGCGCY | 4 cut(s) | 295, 435, 494, 752 |
| BstHHI | GCGC | 6 cut(s) | 294, 396, 413, 434, 493, 751 |
| BstKTI | GATC | 2 cut(s) | 94, 822 |
| BstMAI | GTCTC | 1 cut(s) | 442 |
| BstMBI | GATC | 2 cut(s) | 91, 819 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 291, 364, 373, 410, 499, 554, 614, 689, 746 |
| BstNI | CCWGG | 1 cut(s) | 961 |
| BstSCI | CCNGG | 3 cut(s) | 15, 771, 959 |
| BstSLI | GKGCMC | 1 cut(s) | 35 |
| BstUI | CGCG | 2 cut(s) | 396, 411 |
| BstV1I | GCAGC | 4 cut(s) | 210, 301, 489, 626 |
| BsuRI | GGCC | 5 cut(s) | 98, 126, 659, 743, 840 |
| BtgI | CCRYGG | 2 cut(s) | 609, 744 |
| BtsCI | GGATG | 2 cut(s) | 102, 177 |
| BtsI | GCAGTG | 2 cut(s) | 280, 645 |
| BtsIMutI | CAGTG | 4 cut(s) | 280, 420, 645, 1132 |
| BveI | ACCTGC | 1 cut(s) | 143 |
| Cac8I | GCNNGC | 5 cut(s) | 113, 124, 287, 789, 1194 |
| CfoI | GCGC | 6 cut(s) | 294, 396, 413, 434, 493, 751 |
| Cfr10I | RCCGGY | 2 cut(s) | 122, 780 |
| Cfr13I | GGNCC | 3 cut(s) | 96, 591, 838 |
| CseI | GACGC | 4 cut(s) | 128, 331, 407, 445 |
| Csp6I | GTAC | 1 cut(s) | 132 |
| CviAII | CATG | 2 cut(s) | 1141, 1182 |
| CviQI | GTAC | 1 cut(s) | 132 |
| DdeI | CTNAG | 3 cut(s) | 9, 423, 1124 |
| DinI | GGCGCC | 1 cut(s) | 433 |
| DpnI | GATC | 2 cut(s) | 93, 821 |
| DpnII | GATC | 2 cut(s) | 91, 819 |
| EaeI | YGGCCR | 2 cut(s) | 124, 741 |
| Eam1104I | CTCTTC | 1 cut(s) | 891 |
| EarI | CTCTTC | 1 cut(s) | 891 |
| Ecl136II | GAGCTC | 1 cut(s) | 957 |
| Eco130I | CCWWGG | 1 cut(s) | 583 |
| Eco24I | GRGCYC | 3 cut(s) | 474, 694, 959 |
| Eco47I | GGWCC | 1 cut(s) | 591 |
| Eco53kI | GAGCTC | 1 cut(s) | 957 |
| Eco88I | CYCGRG | 3 cut(s) | 76, 347, 707 |
| EcoICRI | GAGCTC | 1 cut(s) | 957 |
| EcoO109I | RGGNCCY | 1 cut(s) | 591 |
| EcoRII | CCWGG | 1 cut(s) | 959 |
| EcoT14I | CCWWGG | 1 cut(s) | 583 |
| EcoT38I | GRGCYC | 3 cut(s) | 474, 694, 959 |
| EgeI | GGCGCC | 1 cut(s) | 433 |
| EheI | GGCGCC | 1 cut(s) | 433 |
| ErhI | CCWWGG | 1 cut(s) | 583 |
| Esp3I | CGTCTC | 1 cut(s) | 442 |
| FaeI | CATG | 2 cut(s) | 1144, 1185 |
| FaiI | YATR | 8 cut(s) | 68, 216, 673, 975, 1008, 1142, 1174, 1183 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 525, 557 |
| FaqI | GGGAC | 2 cut(s) | 577, 725 |
| FatI | CATG | 2 cut(s) | 1140, 1181 |
| FauI | CCCGC | 2 cut(s) | 482, 780 |
| FblI | GTMKAC | 1 cut(s) | 459 |
| Fnu4HI | GCNGC | 7 cut(s) | 199, 290, 402, 503, 615, 741, 785 |
| FokI | GGATG | 2 cut(s) | 89, 164 |
| FriOI | GRGCYC | 3 cut(s) | 474, 694, 959 |
| Fsp4HI | GCNGC | 7 cut(s) | 199, 290, 402, 503, 615, 741, 785 |
| FspBI | CTAG | 2 cut(s) | 695, 1193 |
| GlaI | GCGC | 6 cut(s) | 293, 395, 412, 433, 492, 750 |
| GluI | GCNGC | 7 cut(s) | 199, 290, 402, 503, 615, 741, 785 |
| GsaI | CCCAGC | 1 cut(s) | 304 |
| GsuI | CTGGAG | 2 cut(s) | 318, 943 |
| HaeII | RGCGCY | 4 cut(s) | 295, 435, 494, 752 |
| HaeIII | GGCC | 5 cut(s) | 98, 126, 659, 743, 840 |
| HapII | CCGG | 5 cut(s) | 17, 123, 429, 773, 781 |
| HgaI | GACGC | 4 cut(s) | 128, 331, 407, 445 |
| HhaI | GCGC | 6 cut(s) | 294, 396, 413, 434, 493, 751 |
| Hin1I | GRCGYC | 3 cut(s) | 120, 399, 432 |
| Hin1II | CATG | 2 cut(s) | 1144, 1185 |
| Hin6I | GCGC | 6 cut(s) | 292, 394, 411, 432, 491, 749 |
| HinP1I | GCGC | 6 cut(s) | 292, 394, 411, 432, 491, 749 |
| HincII | GTYRAC | 3 cut(s) | 460, 627, 652 |
| HindII | GTYRAC | 3 cut(s) | 460, 627, 652 |
| HinfI | GANTC | 9 cut(s) | 7, 350, 362, 425, 461, 567, 833, 1120, 1187 |
| HpaII | CCGG | 5 cut(s) | 17, 123, 429, 773, 781 |
| HphI | GGTGA | 3 cut(s) | 136, 245, 269 |
| Hpy166II | GTNNAC | 3 cut(s) | 460, 627, 652 |
| Hpy188I | TCNGA | 4 cut(s) | 58, 466, 824, 1119 |
| Hpy188III | TCNNGA | 1 cut(s) | 725 |
| Hpy8I | GTNNAC | 3 cut(s) | 460, 627, 652 |
| Hpy99I | CGWCG | 6 cut(s) | 122, 325, 401, 461, 527, 622 |
| HpyAV | CCTTC | 4 cut(s) | 180, 230, 881, 1034 |
| HpyCH4III | ACNGT | 2 cut(s) | 131, 445 |
| HpyCH4V | TGCA | 2 cut(s) | 683, 882 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 291, 364, 373, 410, 499, 554, 614, 689, 746 |
| HpyF3I | CTNAG | 3 cut(s) | 9, 423, 1124 |
| Hsp92I | GRCGYC | 3 cut(s) | 120, 399, 432 |
| Hsp92II | CATG | 2 cut(s) | 1144, 1185 |
| HspAI | GCGC | 6 cut(s) | 292, 394, 411, 432, 491, 749 |
| KasI | GGCGCC | 1 cut(s) | 431 |
| KflI | GGGWCCC | 1 cut(s) | 591 |
| KroI | GCCGGC | 1 cut(s) | 122 |
| KroNI | GCCGGC | 1 cut(s) | 124 |
| Kzo9I | GATC | 2 cut(s) | 91, 819 |
| LmnI | GCTCC | 5 cut(s) | 469, 554, 585, 954, 962 |
| Lsp1109I | GCAGC | 4 cut(s) | 210, 301, 489, 626 |
| MaeI | CTAG | 2 cut(s) | 695, 1193 |
| MaeIII | GTNAC | 1 cut(s) | 80 |
| MalI | GATC | 2 cut(s) | 93, 821 |
| MboI | GATC | 2 cut(s) | 91, 819 |
| MboII | GAAGA | 2 cut(s) | 908, 1085 |
| MhlI | GDGCHC | 5 cut(s) | 35, 474, 582, 694, 959 |
| MluCI | AATT | 7 cut(s) | 236, 684, 825, 991, 1053, 1108, 1168 |
| Mly113I | GGCGCC | 1 cut(s) | 432 |
| MlyI | GAGTC | 4 cut(s) | 359, 434, 455, 1196 |
| MmeI | TCCRAC | 2 cut(s) | 81, 130 |
| MroNI | GCCGGC | 1 cut(s) | 122 |
| MseI | TTAA | 2 cut(s) | 912, 1201 |
| MslI | CAYNNNNRTG | 2 cut(s) | 676, 1145 |
| MspI | CCGG | 5 cut(s) | 17, 123, 429, 773, 781 |
| MspR9I | CCNGG | 3 cut(s) | 17, 773, 961 |
| MvaI | CCWGG | 1 cut(s) | 961 |
| MvnI | CGCG | 2 cut(s) | 396, 411 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 291, 364, 373, 410, 499, 554, 614, 689, 746 |
| NaeI | GCCGGC | 1 cut(s) | 124 |
| NarI | GGCGCC | 1 cut(s) | 432 |
| NciI | CCSGG | 2 cut(s) | 17, 773 |
| NdeII | GATC | 2 cut(s) | 91, 819 |
| NgoMIV | GCCGGC | 1 cut(s) | 122 |
| NheI | GCTAGC | 1 cut(s) | 1192 |
| NlaIII | CATG | 2 cut(s) | 1144, 1185 |
| NlaIV | GGNNCC | 5 cut(s) | 433, 471, 592, 593, 1133 |
| NmeAIII | GCCGAG | 1 cut(s) | 574 |
| NmuCI | GTSAC | 1 cut(s) | 80 |
| PaeR7I | CTCGAG | 1 cut(s) | 347 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 366, 567, 626 |
| PdiI | GCCGGC | 1 cut(s) | 124 |
| PfeI | GAWTC | 4 cut(s) | 362, 567, 833, 1120 |
| PfoI | TCCNGGA | 2 cut(s) | 15, 771 |
| PkrI | GCNGC | 7 cut(s) | 200, 291, 403, 504, 616, 742, 786 |
| PleI | GAGTC | 4 cut(s) | 358, 433, 455, 1195 |
| PluTI | GGCGCC | 1 cut(s) | 435 |
| PpsI | GAGTC | 4 cut(s) | 358, 433, 455, 1195 |
| PpuMI | RGGWCCY | 1 cut(s) | 591 |
| Psp124BI | GAGCTC | 1 cut(s) | 959 |
| Psp5II | RGGWCCY | 1 cut(s) | 591 |
| Psp6I | CCWGG | 1 cut(s) | 959 |
| PspFI | CCCAGC | 1 cut(s) | 300 |
| PspGI | CCWGG | 1 cut(s) | 959 |
| PspN4I | GGNNCC | 5 cut(s) | 433, 471, 592, 593, 1133 |
| PspPI | GGNCC | 3 cut(s) | 96, 591, 838 |
| PspPPI | RGGWCCY | 1 cut(s) | 591 |
| PspXI | VCTCGAGB | 1 cut(s) | 347 |
| RsaI | GTAC | 1 cut(s) | 133 |
| RsaNI | GTAC | 1 cut(s) | 132 |
| RseI | CAYNNNNRTG | 2 cut(s) | 676, 1145 |
| SacI | GAGCTC | 1 cut(s) | 959 |
| SalI | GTCGAC | 1 cut(s) | 458 |
| SaqAI | TTAA | 2 cut(s) | 912, 1201 |
| SatI | GCNGC | 7 cut(s) | 199, 290, 402, 503, 615, 741, 785 |
| Sau3AI | GATC | 2 cut(s) | 91, 819 |
| Sau96I | GGNCC | 3 cut(s) | 96, 591, 838 |
| SchI | GAGTC | 4 cut(s) | 359, 434, 455, 1196 |
| ScrFI | CCNGG | 3 cut(s) | 17, 773, 961 |
| SduI | GDGCHC | 5 cut(s) | 35, 474, 582, 694, 959 |
| SfoI | GGCGCC | 1 cut(s) | 433 |
| Sfr274I | CTCGAG | 1 cut(s) | 347 |
| SinI | GGWCC | 1 cut(s) | 591 |
| SlaI | CTCGAG | 1 cut(s) | 347 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 676, 1145 |
| SmlI | CTYRAG | 3 cut(s) | 347, 449, 1162 |
| SmoI | CTYRAG | 3 cut(s) | 347, 449, 1162 |
| Sse9I | AATT | 7 cut(s) | 236, 684, 825, 991, 1053, 1108, 1168 |
| SsiI | CCGC | 7 cut(s) | 196, 402, 475, 740, 784, 787, 851 |
| SspDI | GGCGCC | 1 cut(s) | 431 |
| SspMI | CTAG | 2 cut(s) | 695, 1193 |
| SstI | GAGCTC | 1 cut(s) | 959 |
| StyD4I | CCNGG | 3 cut(s) | 15, 771, 959 |
| StyI | CCWWGG | 1 cut(s) | 583 |
| TaaI | ACNGT | 2 cut(s) | 131, 445 |
| TasI | AATT | 7 cut(s) | 236, 684, 825, 991, 1053, 1108, 1168 |
| TauI | GCSGC | 3 cut(s) | 404, 743, 787 |
| TfiI | GAWTC | 4 cut(s) | 362, 567, 833, 1120 |
| Tru1I | TTAA | 2 cut(s) | 912, 1201 |
| Tru9I | TTAA | 2 cut(s) | 912, 1201 |
| TscAI | CASTG | 4 cut(s) | 287, 427, 645, 1132 |
| TseFI | GTSAC | 1 cut(s) | 80 |
| TseI | GCWGC | 4 cut(s) | 198, 289, 502, 614 |
| Tsp45I | GTSAC | 1 cut(s) | 80 |
| TspDTI | ATGAA | 4 cut(s) | 1053, 1098, 1161, 1170 |
| TspRI | CASTG | 4 cut(s) | 287, 427, 645, 1132 |
| VpaK11BI | GGWCC | 1 cut(s) | 591 |
| XapI | RAATTY | 1 cut(s) | 991 |
| XhoI | CTCGAG | 1 cut(s) | 347 |
| XmiI | GTMKAC | 1 cut(s) | 459 |
| XspI | CTAG | 2 cut(s) | 695, 1193 |