RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G21350 |
| fragaria_vesca | FvH4_3g03220 |
| malus_domestica | MD05G1334100.v1.1 MD10G1309000.v1.1 |
| prunus_persica | Prupe.4G031100_v2.0.a1 Prupe.4G031100_v2.0.a1 |
| pyrus_communis | pycom05g30580 pycom10g26040 |
| rosa_chinensis | RchiOBHm_Chr5g0004861 |
| rosa_laevigata | RLG00000031267 |
| rosa_multiflora | Rmu_sc0010871.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00070760 |
| rosa_rugosa | Rorug04G0414800 |
| rosa_samantha | Rh5AG042300 Rh5BG042000 Rh5CG045800 Rh5DG042400 |
| rosa_wichuraiana | Rw5G004090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 143 |
| Acc36I | ACCTGC | 1 cut(s) | 143 |
| AccB1I | GGYRCC | 1 cut(s) | 428 |
| AccI | GTMKAC | 1 cut(s) | 456 |
| AccII | CGCG | 2 cut(s) | 393, 408 |
| AciI | CCGC | 8 cut(s) | 130, 196, 280, 472, 737, 781, 784, 848 |
| AclWI | GGATC | 1 cut(s) | 811 |
| AcoI | YGGCCR | 1 cut(s) | 738 |
| AcsI | RAATTY | 1 cut(s) | 988 |
| AcyI | GRCGYC | 3 cut(s) | 120, 396, 429 |
| AfaI | GTAC | 2 cut(s) | 251, 576 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 93, 484, 607, 663, 784, 844 |
| AgsI | TTSAA | 4 cut(s) | 28, 854, 988, 1070 |
| AjnI | CCWGG | 1 cut(s) | 956 |
| AluBI | AGCT | 7 cut(s) | 335, 355, 373, 415, 513, 630, 954 |
| AluI | AGCT | 7 cut(s) | 335, 355, 373, 415, 513, 630, 954 |
| Alw21I | GWGCWC | 1 cut(s) | 956 |
| Alw26I | GTCTC | 1 cut(s) | 439 |
| AlwI | GGATC | 1 cut(s) | 811 |
| Ama87I | CYCGRG | 2 cut(s) | 76, 344 |
| AoxI | GGCC | 4 cut(s) | 96, 654, 738, 835 |
| ApeKI | GCWGC | 4 cut(s) | 198, 286, 499, 611 |
| ApoI | RAATTY | 1 cut(s) | 988 |
| AspLEI | GCGC | 6 cut(s) | 291, 393, 410, 431, 490, 748 |
| AspS9I | GGNCC | 3 cut(s) | 96, 588, 835 |
| AsuC2I | CCSGG | 2 cut(s) | 17, 770 |
| AsuHPI | GGTGA | 2 cut(s) | 119, 266 |
| AvaI | CYCGRG | 2 cut(s) | 76, 344 |
| AvaII | GGWCC | 1 cut(s) | 588 |
| BaeGI | GKGCMC | 1 cut(s) | 35 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 233, 266 |
| BanI | GGYRCC | 1 cut(s) | 428 |
| BanII | GRGCYC | 3 cut(s) | 471, 691, 956 |
| Bbv12I | GWGCWC | 1 cut(s) | 956 |
| BbvI | GCAGC | 4 cut(s) | 210, 298, 486, 623 |
| BccI | CCATC | 4 cut(s) | 110, 279, 764, 892 |
| BceAI | ACGGC | 5 cut(s) | 416, 585, 590, 727, 759 |
| BciT130I | CCWGG | 1 cut(s) | 958 |
| BcnI | CCSGG | 2 cut(s) | 17, 770 |
| BcoDI | GTCTC | 1 cut(s) | 439 |
| BfaI | CTAG | 1 cut(s) | 692 |
| BfoI | RGCGCY | 4 cut(s) | 292, 432, 491, 749 |
| BfuAI | ACCTGC | 1 cut(s) | 143 |
| BisI | GCNGC | 6 cut(s) | 199, 287, 500, 612, 738, 782 |
| BlsI | GCNGC | 6 cut(s) | 200, 288, 501, 613, 739, 783 |
| Bme1390I | CCNGG | 3 cut(s) | 17, 770, 958 |
| Bme18I | GGWCC | 1 cut(s) | 588 |
| BmeT110I | CYCGRG | 2 cut(s) | 76, 344 |
| BmgT120I | GGNCC | 3 cut(s) | 96, 588, 835 |
| BmiI | GGNNCC | 5 cut(s) | 430, 468, 589, 590, 1130 |
| BmrFI | CCNGG | 3 cut(s) | 17, 770, 958 |
| BoxI | GACNNNNGTC | 1 cut(s) | 123 |
| BpmI | CTGGAG | 2 cut(s) | 315, 940 |
| BpuEI | CTTGAG | 1 cut(s) | 431 |
| BpuMI | CCSGG | 2 cut(s) | 17, 770 |
| BsaBI | GATNNNNATC | 1 cut(s) | 815 |
| BsaHI | GRCGYC | 3 cut(s) | 120, 396, 429 |
| BsaJI | CCNNGG | 6 cut(s) | 75, 546, 580, 606, 741, 957 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 141, 171 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 93, 484, 607, 663, 784, 844 |
| Bse118I | RCCGGY | 2 cut(s) | 122, 777 |
| Bse1I | ACTGG | 1 cut(s) | 247 |
| Bse8I | GATNNNNATC | 1 cut(s) | 815 |
| BseBI | CCWGG | 1 cut(s) | 958 |
| BseDI | CCNNGG | 6 cut(s) | 75, 546, 580, 606, 741, 957 |
| BseGI | GGATG | 2 cut(s) | 102, 177 |
| BseJI | GATNNNNATC | 1 cut(s) | 815 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 93, 484, 607, 663, 784, 844 |
| BseMII | CTCAG | 4 cut(s) | 23, 411, 718, 1135 |
| BseNI | ACTGG | 1 cut(s) | 247 |
| BseRI | GAGGAG | 2 cut(s) | 64, 479 |
| BseSI | GKGCMC | 1 cut(s) | 35 |
| BseXI | GCAGC | 4 cut(s) | 210, 298, 486, 623 |
| BseYI | CCCAGC | 1 cut(s) | 297 |
| Bsh1236I | CGCG | 2 cut(s) | 393, 408 |
| BshFI | GGCC | 4 cut(s) | 98, 656, 740, 837 |
| BshNI | GGYRCC | 1 cut(s) | 428 |
| BsiHKAI | GWGCWC | 1 cut(s) | 956 |
| BsiHKCI | CYCGRG | 2 cut(s) | 76, 344 |
| BsiSI | CCGG | 5 cut(s) | 17, 123, 426, 770, 778 |
| BslFI | GGGAC | 2 cut(s) | 574, 722 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 93, 484, 607, 663, 784, 844 |
| BsmAI | GTCTC | 1 cut(s) | 439 |
| BsmBI | CGTCTC | 1 cut(s) | 439 |
| BsmFI | GGGAC | 2 cut(s) | 574, 722 |
| BsmI | GAATGC | 1 cut(s) | 1020 |
| BsnI | GGCC | 4 cut(s) | 98, 656, 740, 837 |
| BsoBI | CYCGRG | 2 cut(s) | 76, 344 |
| Bsp1286I | GDGCHC | 4 cut(s) | 35, 471, 691, 956 |
| Bsp143I | GATC | 2 cut(s) | 91, 816 |
| BspACI | CCGC | 8 cut(s) | 130, 196, 280, 472, 737, 781, 784, 848 |
| BspANI | GGCC | 4 cut(s) | 98, 656, 740, 837 |
| BspCNI | CTCAG | 4 cut(s) | 22, 412, 717, 1134 |
| BspFNI | CGCG | 2 cut(s) | 393, 408 |
| BspLI | GGNNCC | 5 cut(s) | 430, 468, 589, 590, 1130 |
| BspMI | ACCTGC | 1 cut(s) | 143 |
| BspPI | GGATC | 1 cut(s) | 811 |
| BspT107I | GGYRCC | 1 cut(s) | 428 |
| BsrFI | RCCGGY | 2 cut(s) | 122, 777 |
| BsrI | ACTGG | 1 cut(s) | 247 |
| BssAI | RCCGGY | 2 cut(s) | 122, 777 |
| BssECI | CCNNGG | 6 cut(s) | 75, 546, 580, 606, 741, 957 |
| BssMI | GATC | 2 cut(s) | 91, 816 |
| BssNI | GRCGYC | 3 cut(s) | 120, 396, 429 |
| BssT1I | CCWWGG | 1 cut(s) | 580 |
| Bst2UI | CCWGG | 1 cut(s) | 958 |
| Bst4CI | ACNGT | 1 cut(s) | 442 |
| Bst6I | CTCTTC | 1 cut(s) | 888 |
| BstACI | GRCGYC | 3 cut(s) | 120, 396, 429 |
| BstC8I | GCNNGC | 3 cut(s) | 113, 284, 786 |
| BstDEI | CTNAG | 4 cut(s) | 9, 420, 704, 1121 |
| BstDSI | CCRYGG | 2 cut(s) | 606, 741 |
| BstEII | GGTNACC | 1 cut(s) | 125 |
| BstF5I | GGATG | 2 cut(s) | 102, 177 |
| BstFNI | CGCG | 2 cut(s) | 393, 408 |
| BstH2I | RGCGCY | 4 cut(s) | 292, 432, 491, 749 |
| BstHHI | GCGC | 6 cut(s) | 291, 393, 410, 431, 490, 748 |
| BstKTI | GATC | 2 cut(s) | 94, 819 |
| BstMAI | GTCTC | 1 cut(s) | 439 |
| BstMBI | GATC | 2 cut(s) | 91, 816 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 288, 361, 370, 496, 551, 611, 686, 743 |
| BstNI | CCWGG | 1 cut(s) | 958 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 123 |
| BstPI | GGTNACC | 1 cut(s) | 125 |
| BstSCI | CCNGG | 3 cut(s) | 15, 768, 956 |
| BstSLI | GKGCMC | 1 cut(s) | 35 |
| BstUI | CGCG | 2 cut(s) | 393, 408 |
| BstV1I | GCAGC | 4 cut(s) | 210, 298, 486, 623 |
| BsuRI | GGCC | 4 cut(s) | 98, 656, 740, 837 |
| BtgI | CCRYGG | 2 cut(s) | 606, 741 |
| BtsCI | GGATG | 2 cut(s) | 102, 177 |
| BtsI | GCAGTG | 1 cut(s) | 642 |
| BtsIMutI | CAGTG | 3 cut(s) | 417, 642, 1129 |
| BveI | ACCTGC | 1 cut(s) | 143 |
| Cac8I | GCNNGC | 3 cut(s) | 113, 284, 786 |
| CfoI | GCGC | 6 cut(s) | 291, 393, 410, 431, 490, 748 |
| Cfr10I | RCCGGY | 2 cut(s) | 122, 777 |
| Cfr13I | GGNCC | 3 cut(s) | 96, 588, 835 |
| CseI | GACGC | 4 cut(s) | 128, 328, 404, 442 |
| Csp6I | GTAC | 2 cut(s) | 250, 575 |
| CviAII | CATG | 1 cut(s) | 1138 |
| CviQI | GTAC | 2 cut(s) | 250, 575 |
| DdeI | CTNAG | 4 cut(s) | 9, 420, 704, 1121 |
| DinI | GGCGCC | 1 cut(s) | 430 |
| DpnI | GATC | 2 cut(s) | 93, 818 |
| DpnII | GATC | 2 cut(s) | 91, 816 |
| EaeI | YGGCCR | 1 cut(s) | 738 |
| Eam1104I | CTCTTC | 1 cut(s) | 888 |
| EarI | CTCTTC | 1 cut(s) | 888 |
| Ecl136II | GAGCTC | 1 cut(s) | 954 |
| Eco130I | CCWWGG | 1 cut(s) | 580 |
| Eco24I | GRGCYC | 3 cut(s) | 471, 691, 956 |
| Eco47I | GGWCC | 1 cut(s) | 588 |
| Eco53kI | GAGCTC | 1 cut(s) | 954 |
| Eco88I | CYCGRG | 2 cut(s) | 76, 344 |
| Eco91I | GGTNACC | 1 cut(s) | 125 |
| EcoICRI | GAGCTC | 1 cut(s) | 954 |
| EcoO109I | RGGNCCY | 1 cut(s) | 588 |
| EcoO65I | GGTNACC | 1 cut(s) | 125 |
| EcoRII | CCWGG | 1 cut(s) | 956 |
| EcoT14I | CCWWGG | 1 cut(s) | 580 |
| EcoT38I | GRGCYC | 3 cut(s) | 471, 691, 956 |
| EgeI | GGCGCC | 1 cut(s) | 430 |
| EheI | GGCGCC | 1 cut(s) | 430 |
| ErhI | CCWWGG | 1 cut(s) | 580 |
| Esp3I | CGTCTC | 1 cut(s) | 439 |
| FaeI | CATG | 1 cut(s) | 1141 |
| FaiI | YATR | 6 cut(s) | 68, 216, 670, 972, 1005, 1139 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 522, 554 |
| FaqI | GGGAC | 2 cut(s) | 574, 722 |
| FatI | CATG | 1 cut(s) | 1137 |
| FauI | CCCGC | 2 cut(s) | 479, 777 |
| FblI | GTMKAC | 1 cut(s) | 456 |
| Fnu4HI | GCNGC | 6 cut(s) | 199, 287, 500, 612, 738, 782 |
| FokI | GGATG | 2 cut(s) | 89, 164 |
| FriOI | GRGCYC | 3 cut(s) | 471, 691, 956 |
| Fsp4HI | GCNGC | 6 cut(s) | 199, 287, 500, 612, 738, 782 |
| FspBI | CTAG | 1 cut(s) | 692 |
| GlaI | GCGC | 6 cut(s) | 290, 392, 409, 430, 489, 747 |
| GluI | GCNGC | 6 cut(s) | 199, 287, 500, 612, 738, 782 |
| GsaI | CCCAGC | 1 cut(s) | 301 |
| GsuI | CTGGAG | 2 cut(s) | 315, 940 |
| HaeII | RGCGCY | 4 cut(s) | 292, 432, 491, 749 |
| HaeIII | GGCC | 4 cut(s) | 98, 656, 740, 837 |
| HapII | CCGG | 5 cut(s) | 17, 123, 426, 770, 778 |
| HgaI | GACGC | 4 cut(s) | 128, 328, 404, 442 |
| HhaI | GCGC | 6 cut(s) | 291, 393, 410, 431, 490, 748 |
| Hin1I | GRCGYC | 3 cut(s) | 120, 396, 429 |
| Hin1II | CATG | 1 cut(s) | 1141 |
| Hin6I | GCGC | 6 cut(s) | 289, 391, 408, 429, 488, 746 |
| HinP1I | GCGC | 6 cut(s) | 289, 391, 408, 429, 488, 746 |
| HincII | GTYRAC | 3 cut(s) | 457, 624, 649 |
| HindII | GTYRAC | 3 cut(s) | 457, 624, 649 |
| HinfI | GANTC | 8 cut(s) | 7, 347, 359, 422, 458, 564, 830, 1117 |
| HpaII | CCGG | 5 cut(s) | 17, 123, 426, 770, 778 |
| HphI | GGTGA | 2 cut(s) | 119, 266 |
| Hpy166II | GTNNAC | 3 cut(s) | 457, 624, 649 |
| Hpy188I | TCNGA | 4 cut(s) | 58, 463, 821, 1116 |
| Hpy188III | TCNNGA | 1 cut(s) | 722 |
| Hpy8I | GTNNAC | 3 cut(s) | 457, 624, 649 |
| Hpy99I | CGWCG | 6 cut(s) | 122, 322, 398, 458, 524, 619 |
| HpyAV | CCTTC | 4 cut(s) | 180, 230, 878, 1031 |
| HpyCH4III | ACNGT | 1 cut(s) | 442 |
| HpyCH4V | TGCA | 2 cut(s) | 680, 879 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 288, 361, 370, 496, 551, 611, 686, 743 |
| HpyF3I | CTNAG | 4 cut(s) | 9, 420, 704, 1121 |
| Hsp92I | GRCGYC | 3 cut(s) | 120, 396, 429 |
| Hsp92II | CATG | 1 cut(s) | 1141 |
| HspAI | GCGC | 6 cut(s) | 289, 391, 408, 429, 488, 746 |
| KasI | GGCGCC | 1 cut(s) | 428 |
| KflI | GGGWCCC | 1 cut(s) | 588 |
| Kzo9I | GATC | 2 cut(s) | 91, 816 |
| LmnI | GCTCC | 4 cut(s) | 466, 551, 951, 959 |
| Lsp1109I | GCAGC | 4 cut(s) | 210, 298, 486, 623 |
| MaeI | CTAG | 1 cut(s) | 692 |
| MaeIII | GTNAC | 2 cut(s) | 80, 125 |
| MalI | GATC | 2 cut(s) | 93, 818 |
| MboI | GATC | 2 cut(s) | 91, 816 |
| MboII | GAAGA | 2 cut(s) | 905, 1082 |
| MhlI | GDGCHC | 4 cut(s) | 35, 471, 691, 956 |
| MluCI | AATT | 7 cut(s) | 141, 236, 681, 822, 988, 1050, 1105 |
| Mly113I | GGCGCC | 1 cut(s) | 429 |
| MlyI | GAGTC | 3 cut(s) | 356, 431, 452 |
| MmeI | TCCRAC | 2 cut(s) | 81, 130 |
| MseI | TTAA | 1 cut(s) | 909 |
| MslI | CAYNNNNRTG | 1 cut(s) | 673 |
| MspI | CCGG | 5 cut(s) | 17, 123, 426, 770, 778 |
| MspR9I | CCNGG | 3 cut(s) | 17, 770, 958 |
| Mva1269I | GAATGC | 1 cut(s) | 1020 |
| MvaI | CCWGG | 1 cut(s) | 958 |
| MvnI | CGCG | 2 cut(s) | 393, 408 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 288, 361, 370, 496, 551, 611, 686, 743 |
| NarI | GGCGCC | 1 cut(s) | 429 |
| NciI | CCSGG | 2 cut(s) | 17, 770 |
| NdeII | GATC | 2 cut(s) | 91, 816 |
| NlaIII | CATG | 1 cut(s) | 1141 |
| NlaIV | GGNNCC | 5 cut(s) | 430, 468, 589, 590, 1130 |
| NmeAIII | GCCGAG | 1 cut(s) | 571 |
| NmuCI | GTSAC | 2 cut(s) | 80, 125 |
| PaeR7I | CTCGAG | 1 cut(s) | 344 |
| PaqCI | CACCTGC | 1 cut(s) | 143 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 564, 623 |
| PctI | GAATGC | 1 cut(s) | 1020 |
| PfeI | GAWTC | 4 cut(s) | 359, 564, 830, 1117 |
| PfoI | TCCNGGA | 2 cut(s) | 15, 768 |
| PkrI | GCNGC | 6 cut(s) | 200, 288, 501, 613, 739, 783 |
| PleI | GAGTC | 3 cut(s) | 355, 430, 452 |
| PluTI | GGCGCC | 1 cut(s) | 432 |
| PpsI | GAGTC | 3 cut(s) | 355, 430, 452 |
| PpuMI | RGGWCCY | 1 cut(s) | 588 |
| PshAI | GACNNNNGTC | 1 cut(s) | 123 |
| Psp124BI | GAGCTC | 1 cut(s) | 956 |
| Psp5II | RGGWCCY | 1 cut(s) | 588 |
| Psp6I | CCWGG | 1 cut(s) | 956 |
| PspEI | GGTNACC | 1 cut(s) | 125 |
| PspFI | CCCAGC | 1 cut(s) | 297 |
| PspGI | CCWGG | 1 cut(s) | 956 |
| PspN4I | GGNNCC | 5 cut(s) | 430, 468, 589, 590, 1130 |
| PspPI | GGNCC | 3 cut(s) | 96, 588, 835 |
| PspPPI | RGGWCCY | 1 cut(s) | 588 |
| PspXI | VCTCGAGB | 1 cut(s) | 344 |
| RsaI | GTAC | 2 cut(s) | 251, 576 |
| RsaNI | GTAC | 2 cut(s) | 250, 575 |
| RseI | CAYNNNNRTG | 1 cut(s) | 673 |
| SacI | GAGCTC | 1 cut(s) | 956 |
| SalI | GTCGAC | 1 cut(s) | 455 |
| SaqAI | TTAA | 1 cut(s) | 909 |
| SatI | GCNGC | 6 cut(s) | 199, 287, 500, 612, 738, 782 |
| Sau3AI | GATC | 2 cut(s) | 91, 816 |
| Sau96I | GGNCC | 3 cut(s) | 96, 588, 835 |
| SchI | GAGTC | 3 cut(s) | 356, 431, 452 |
| ScrFI | CCNGG | 3 cut(s) | 17, 770, 958 |
| SduI | GDGCHC | 4 cut(s) | 35, 471, 691, 956 |
| SfoI | GGCGCC | 1 cut(s) | 430 |
| Sfr274I | CTCGAG | 1 cut(s) | 344 |
| SinI | GGWCC | 1 cut(s) | 588 |
| SlaI | CTCGAG | 1 cut(s) | 344 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 673 |
| SmlI | CTYRAG | 2 cut(s) | 344, 446 |
| SmoI | CTYRAG | 2 cut(s) | 344, 446 |
| Sse9I | AATT | 7 cut(s) | 141, 236, 681, 822, 988, 1050, 1105 |
| SsiI | CCGC | 8 cut(s) | 130, 196, 280, 472, 737, 781, 784, 848 |
| SspDI | GGCGCC | 1 cut(s) | 428 |
| SspMI | CTAG | 1 cut(s) | 692 |
| SstI | GAGCTC | 1 cut(s) | 956 |
| StyD4I | CCNGG | 3 cut(s) | 15, 768, 956 |
| StyI | CCWWGG | 1 cut(s) | 580 |
| TaaI | ACNGT | 1 cut(s) | 442 |
| TasI | AATT | 7 cut(s) | 141, 236, 681, 822, 988, 1050, 1105 |
| TauI | GCSGC | 2 cut(s) | 740, 784 |
| TfiI | GAWTC | 4 cut(s) | 359, 564, 830, 1117 |
| Tru1I | TTAA | 1 cut(s) | 909 |
| Tru9I | TTAA | 1 cut(s) | 909 |
| TscAI | CASTG | 3 cut(s) | 424, 642, 1129 |
| TseFI | GTSAC | 2 cut(s) | 80, 125 |
| TseI | GCWGC | 4 cut(s) | 198, 286, 499, 611 |
| Tsp45I | GTSAC | 2 cut(s) | 80, 125 |
| TspDTI | ATGAA | 2 cut(s) | 1050, 1095 |
| TspRI | CASTG | 3 cut(s) | 424, 642, 1129 |
| VpaK11BI | GGWCC | 1 cut(s) | 588 |
| XapI | RAATTY | 1 cut(s) | 988 |
| XhoI | CTCGAG | 1 cut(s) | 344 |
| XmiI | GTMKAC | 1 cut(s) | 456 |
| XspI | CTAG | 1 cut(s) | 692 |