MD05G1334100.v1.1

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
45730248 .. 45731393
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1334100.v1.1.491

Sequence Viewer

Length: 1146 bp
ATGGCGACTCAGTTCCCGGACGATTTCAAGTGCCCGATTTCCCTCGAAATAATGTCCGACCCTGTTATACTCTCCTCGGGTCACACCTTTGATCGGGCCTCCATCCAACGCTGGCTCGACGCCGGTCACCGCACCTGCCCAATTACCAAACTGCCCCTCCCCGACCACCCTTCCCTCATCCCCAACCACGCCCTCCGCAGCCTGATTTCCACTTATACCCTTCTCTCCCCTGCCAAATTACAACACCAGTACCACCACCACCACCAATACCATCACCACCGCCAGCAGCGCCACTCCCAGCCCCAAAACCCAATATCGACGCTTACCTCTCCAGCTTCCACCCTCGAGTCCAAGCTCGAATCGCTTGACCAGCTCACTCGCCTCTCCAAGCGCGACGCCGACTTTCGCGCCAAGCTCACTGAGTCCGGCGCCGTCTCCACCGTCCTCAAGTGCGTCGACTCGGAGGAGCCCCGCCTCCAAGAAAAGGCGCTGACTTTGCTGCTCAATGTCAGCTTGGACGACGATAACAAAGTGGGTCTTGTCGCCGAGGGAGCAATCGCTCGAATCGTGGAGGTACTCCAAGGTGGGTCCCCCAACAGCCGTGCCGTGGCAGCGACGATGTTGACGAGCTTGGCAGTGGTGGAGGTCAACAAGGCCACAATCGGGGCATACCCGTGTGCAATTCGGGCTCTAGTTTCGCTTCTCAGGGACGGCAAAAGTCGAGAGCAGAAAGAGGCGGCCACGGCGCTTTACACCATCTGTTTGTTCCCGGATAACCGGCGGCGGGCTGTGGAATGTGGGGTGGTGTCGATTTTGATCCGAATTGCTGAATCGGGCCTCGAACGGGCGGTTGAAGTTCTGGGTCTTTTGGCAAAGTGCAAGGAAGGTAGAGAAGAGATGGAGAGGTTTAATGGTTGTGTGGGGATTTTAGTGAGGGTTTTAGAAAATGGGAGCTCCAGGGGAGTTCAGTATGCCTTGCTTACTTTGAATTTGCTTTGTTCTTATAGCGAACGAATGCGTGTGGAAGCAAAAAATGAAGGGGCTTTGGCAATTTGTGTAGGTTTGGTTGAAGATGATAATGAAAGGATTGGAAAAAATGCTTCTAATTTGGTTCAGATTCTCAGTGGGAACCAATCCATGAGGTGA

Protein Analysis

382

Amino Acids

41.91

Weight (kDa)

7.62

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 6 - 72 4.2e-20 U-box domain
zf-Nse PF11789 8 - 48 3.1e-06 Zinc-finger of the MIZ type in Nse subunit
zf-RING_UBOX PF13445 11 - 47 3.4e-07 RING-type zinc-finger
ARM_PUB PF25598 116 - 348 3.2e-23 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012930)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 143
Acc36I ACCTGC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 428
AccI GTMKAC 1 cut(s) 456
AccII CGCG 2 cut(s) 393, 408
AciI CCGC 8 cut(s) 130, 196, 280, 472, 737, 781, 784, 848
AclWI GGATC 1 cut(s) 811
AcoI YGGCCR 1 cut(s) 738
AcsI RAATTY 1 cut(s) 988
AcyI GRCGYC 3 cut(s) 120, 396, 429
AfaI GTAC 2 cut(s) 251, 576
AfiI CCNNNNNNNGG 6 cut(s) 93, 484, 607, 663, 784, 844
AgsI TTSAA 4 cut(s) 28, 854, 988, 1070
AjnI CCWGG 1 cut(s) 956
AluBI AGCT 7 cut(s) 335, 355, 373, 415, 513, 630, 954
AluI AGCT 7 cut(s) 335, 355, 373, 415, 513, 630, 954
Alw21I GWGCWC 1 cut(s) 956
Alw26I GTCTC 1 cut(s) 439
AlwI GGATC 1 cut(s) 811
Ama87I CYCGRG 2 cut(s) 76, 344
AoxI GGCC 4 cut(s) 96, 654, 738, 835
ApeKI GCWGC 4 cut(s) 198, 286, 499, 611
ApoI RAATTY 1 cut(s) 988
AspLEI GCGC 6 cut(s) 291, 393, 410, 431, 490, 748
AspS9I GGNCC 3 cut(s) 96, 588, 835
AsuC2I CCSGG 2 cut(s) 17, 770
AsuHPI GGTGA 2 cut(s) 119, 266
AvaI CYCGRG 2 cut(s) 76, 344
AvaII GGWCC 1 cut(s) 588
BaeGI GKGCMC 1 cut(s) 35
BaeI ACNNNNGTAYC 2 cut(s) 233, 266
BanI GGYRCC 1 cut(s) 428
BanII GRGCYC 3 cut(s) 471, 691, 956
Bbv12I GWGCWC 1 cut(s) 956
BbvI GCAGC 4 cut(s) 210, 298, 486, 623
BccI CCATC 4 cut(s) 110, 279, 764, 892
BceAI ACGGC 5 cut(s) 416, 585, 590, 727, 759
BciT130I CCWGG 1 cut(s) 958
BcnI CCSGG 2 cut(s) 17, 770
BcoDI GTCTC 1 cut(s) 439
BfaI CTAG 1 cut(s) 692
BfoI RGCGCY 4 cut(s) 292, 432, 491, 749
BfuAI ACCTGC 1 cut(s) 143
BisI GCNGC 6 cut(s) 199, 287, 500, 612, 738, 782
BlsI GCNGC 6 cut(s) 200, 288, 501, 613, 739, 783
Bme1390I CCNGG 3 cut(s) 17, 770, 958
Bme18I GGWCC 1 cut(s) 588
BmeT110I CYCGRG 2 cut(s) 76, 344
BmgT120I GGNCC 3 cut(s) 96, 588, 835
BmiI GGNNCC 5 cut(s) 430, 468, 589, 590, 1130
BmrFI CCNGG 3 cut(s) 17, 770, 958
BoxI GACNNNNGTC 1 cut(s) 123
BpmI CTGGAG 2 cut(s) 315, 940
BpuEI CTTGAG 1 cut(s) 431
BpuMI CCSGG 2 cut(s) 17, 770
BsaBI GATNNNNATC 1 cut(s) 815
BsaHI GRCGYC 3 cut(s) 120, 396, 429
BsaJI CCNNGG 6 cut(s) 75, 546, 580, 606, 741, 957
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 6 cut(s) 93, 484, 607, 663, 784, 844
Bse118I RCCGGY 2 cut(s) 122, 777
Bse1I ACTGG 1 cut(s) 247
Bse8I GATNNNNATC 1 cut(s) 815
BseBI CCWGG 1 cut(s) 958
BseDI CCNNGG 6 cut(s) 75, 546, 580, 606, 741, 957
BseGI GGATG 2 cut(s) 102, 177
BseJI GATNNNNATC 1 cut(s) 815
BseLI CCNNNNNNNGG 6 cut(s) 93, 484, 607, 663, 784, 844
BseMII CTCAG 4 cut(s) 23, 411, 718, 1135
BseNI ACTGG 1 cut(s) 247
BseRI GAGGAG 2 cut(s) 64, 479
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 4 cut(s) 210, 298, 486, 623
BseYI CCCAGC 1 cut(s) 297
Bsh1236I CGCG 2 cut(s) 393, 408
BshFI GGCC 4 cut(s) 98, 656, 740, 837
BshNI GGYRCC 1 cut(s) 428
BsiHKAI GWGCWC 1 cut(s) 956
BsiHKCI CYCGRG 2 cut(s) 76, 344
BsiSI CCGG 5 cut(s) 17, 123, 426, 770, 778
BslFI GGGAC 2 cut(s) 574, 722
BslI CCNNNNNNNGG 6 cut(s) 93, 484, 607, 663, 784, 844
BsmAI GTCTC 1 cut(s) 439
BsmBI CGTCTC 1 cut(s) 439
BsmFI GGGAC 2 cut(s) 574, 722
BsmI GAATGC 1 cut(s) 1020
BsnI GGCC 4 cut(s) 98, 656, 740, 837
BsoBI CYCGRG 2 cut(s) 76, 344
Bsp1286I GDGCHC 4 cut(s) 35, 471, 691, 956
Bsp143I GATC 2 cut(s) 91, 816
BspACI CCGC 8 cut(s) 130, 196, 280, 472, 737, 781, 784, 848
BspANI GGCC 4 cut(s) 98, 656, 740, 837
BspCNI CTCAG 4 cut(s) 22, 412, 717, 1134
BspFNI CGCG 2 cut(s) 393, 408
BspLI GGNNCC 5 cut(s) 430, 468, 589, 590, 1130
BspMI ACCTGC 1 cut(s) 143
BspPI GGATC 1 cut(s) 811
BspT107I GGYRCC 1 cut(s) 428
BsrFI RCCGGY 2 cut(s) 122, 777
BsrI ACTGG 1 cut(s) 247
BssAI RCCGGY 2 cut(s) 122, 777
BssECI CCNNGG 6 cut(s) 75, 546, 580, 606, 741, 957
BssMI GATC 2 cut(s) 91, 816
BssNI GRCGYC 3 cut(s) 120, 396, 429
BssT1I CCWWGG 1 cut(s) 580
Bst2UI CCWGG 1 cut(s) 958
Bst4CI ACNGT 1 cut(s) 442
Bst6I CTCTTC 1 cut(s) 888
BstACI GRCGYC 3 cut(s) 120, 396, 429
BstC8I GCNNGC 3 cut(s) 113, 284, 786
BstDEI CTNAG 4 cut(s) 9, 420, 704, 1121
BstDSI CCRYGG 2 cut(s) 606, 741
BstEII GGTNACC 1 cut(s) 125
BstF5I GGATG 2 cut(s) 102, 177
BstFNI CGCG 2 cut(s) 393, 408
BstH2I RGCGCY 4 cut(s) 292, 432, 491, 749
BstHHI GCGC 6 cut(s) 291, 393, 410, 431, 490, 748
BstKTI GATC 2 cut(s) 94, 819
BstMAI GTCTC 1 cut(s) 439
BstMBI GATC 2 cut(s) 91, 816
BstMWI GCNNNNNNNGC 8 cut(s) 288, 361, 370, 496, 551, 611, 686, 743
BstNI CCWGG 1 cut(s) 958
BstPAI GACNNNNGTC 1 cut(s) 123
BstPI GGTNACC 1 cut(s) 125
BstSCI CCNGG 3 cut(s) 15, 768, 956
BstSLI GKGCMC 1 cut(s) 35
BstUI CGCG 2 cut(s) 393, 408
BstV1I GCAGC 4 cut(s) 210, 298, 486, 623
BsuRI GGCC 4 cut(s) 98, 656, 740, 837
BtgI CCRYGG 2 cut(s) 606, 741
BtsCI GGATG 2 cut(s) 102, 177
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 3 cut(s) 417, 642, 1129
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 3 cut(s) 113, 284, 786
CfoI GCGC 6 cut(s) 291, 393, 410, 431, 490, 748
Cfr10I RCCGGY 2 cut(s) 122, 777
Cfr13I GGNCC 3 cut(s) 96, 588, 835
CseI GACGC 4 cut(s) 128, 328, 404, 442
Csp6I GTAC 2 cut(s) 250, 575
CviAII CATG 1 cut(s) 1138
CviQI GTAC 2 cut(s) 250, 575
DdeI CTNAG 4 cut(s) 9, 420, 704, 1121
DinI GGCGCC 1 cut(s) 430
DpnI GATC 2 cut(s) 93, 818
DpnII GATC 2 cut(s) 91, 816
EaeI YGGCCR 1 cut(s) 738
Eam1104I CTCTTC 1 cut(s) 888
EarI CTCTTC 1 cut(s) 888
Ecl136II GAGCTC 1 cut(s) 954
Eco130I CCWWGG 1 cut(s) 580
Eco24I GRGCYC 3 cut(s) 471, 691, 956
Eco47I GGWCC 1 cut(s) 588
Eco53kI GAGCTC 1 cut(s) 954
Eco88I CYCGRG 2 cut(s) 76, 344
Eco91I GGTNACC 1 cut(s) 125
EcoICRI GAGCTC 1 cut(s) 954
EcoO109I RGGNCCY 1 cut(s) 588
EcoO65I GGTNACC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 956
EcoT14I CCWWGG 1 cut(s) 580
EcoT38I GRGCYC 3 cut(s) 471, 691, 956
EgeI GGCGCC 1 cut(s) 430
EheI GGCGCC 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 580
Esp3I CGTCTC 1 cut(s) 439
FaeI CATG 1 cut(s) 1141
FaiI YATR 6 cut(s) 68, 216, 670, 972, 1005, 1139
FalI AAGNNNNNCTT 2 cut(s) 522, 554
FaqI GGGAC 2 cut(s) 574, 722
FatI CATG 1 cut(s) 1137
FauI CCCGC 2 cut(s) 479, 777
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 6 cut(s) 199, 287, 500, 612, 738, 782
FokI GGATG 2 cut(s) 89, 164
FriOI GRGCYC 3 cut(s) 471, 691, 956
Fsp4HI GCNGC 6 cut(s) 199, 287, 500, 612, 738, 782
FspBI CTAG 1 cut(s) 692
GlaI GCGC 6 cut(s) 290, 392, 409, 430, 489, 747
GluI GCNGC 6 cut(s) 199, 287, 500, 612, 738, 782
GsaI CCCAGC 1 cut(s) 301
GsuI CTGGAG 2 cut(s) 315, 940
HaeII RGCGCY 4 cut(s) 292, 432, 491, 749
HaeIII GGCC 4 cut(s) 98, 656, 740, 837
HapII CCGG 5 cut(s) 17, 123, 426, 770, 778
HgaI GACGC 4 cut(s) 128, 328, 404, 442
HhaI GCGC 6 cut(s) 291, 393, 410, 431, 490, 748
Hin1I GRCGYC 3 cut(s) 120, 396, 429
Hin1II CATG 1 cut(s) 1141
Hin6I GCGC 6 cut(s) 289, 391, 408, 429, 488, 746
HinP1I GCGC 6 cut(s) 289, 391, 408, 429, 488, 746
HincII GTYRAC 3 cut(s) 457, 624, 649
HindII GTYRAC 3 cut(s) 457, 624, 649
HinfI GANTC 8 cut(s) 7, 347, 359, 422, 458, 564, 830, 1117
HpaII CCGG 5 cut(s) 17, 123, 426, 770, 778
HphI GGTGA 2 cut(s) 119, 266
Hpy166II GTNNAC 3 cut(s) 457, 624, 649
Hpy188I TCNGA 4 cut(s) 58, 463, 821, 1116
Hpy188III TCNNGA 1 cut(s) 722
Hpy8I GTNNAC 3 cut(s) 457, 624, 649
Hpy99I CGWCG 6 cut(s) 122, 322, 398, 458, 524, 619
HpyAV CCTTC 4 cut(s) 180, 230, 878, 1031
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4V TGCA 2 cut(s) 680, 879
HpyF10VI GCNNNNNNNGC 8 cut(s) 288, 361, 370, 496, 551, 611, 686, 743
HpyF3I CTNAG 4 cut(s) 9, 420, 704, 1121
Hsp92I GRCGYC 3 cut(s) 120, 396, 429
Hsp92II CATG 1 cut(s) 1141
HspAI GCGC 6 cut(s) 289, 391, 408, 429, 488, 746
KasI GGCGCC 1 cut(s) 428
KflI GGGWCCC 1 cut(s) 588
Kzo9I GATC 2 cut(s) 91, 816
LmnI GCTCC 4 cut(s) 466, 551, 951, 959
Lsp1109I GCAGC 4 cut(s) 210, 298, 486, 623
MaeI CTAG 1 cut(s) 692
MaeIII GTNAC 2 cut(s) 80, 125
MalI GATC 2 cut(s) 93, 818
MboI GATC 2 cut(s) 91, 816
MboII GAAGA 2 cut(s) 905, 1082
MhlI GDGCHC 4 cut(s) 35, 471, 691, 956
MluCI AATT 7 cut(s) 141, 236, 681, 822, 988, 1050, 1105
Mly113I GGCGCC 1 cut(s) 429
MlyI GAGTC 3 cut(s) 356, 431, 452
MmeI TCCRAC 2 cut(s) 81, 130
MseI TTAA 1 cut(s) 909
MslI CAYNNNNRTG 1 cut(s) 673
MspI CCGG 5 cut(s) 17, 123, 426, 770, 778
MspR9I CCNGG 3 cut(s) 17, 770, 958
Mva1269I GAATGC 1 cut(s) 1020
MvaI CCWGG 1 cut(s) 958
MvnI CGCG 2 cut(s) 393, 408
MwoI GCNNNNNNNGC 8 cut(s) 288, 361, 370, 496, 551, 611, 686, 743
NarI GGCGCC 1 cut(s) 429
NciI CCSGG 2 cut(s) 17, 770
NdeII GATC 2 cut(s) 91, 816
NlaIII CATG 1 cut(s) 1141
NlaIV GGNNCC 5 cut(s) 430, 468, 589, 590, 1130
NmeAIII GCCGAG 1 cut(s) 571
NmuCI GTSAC 2 cut(s) 80, 125
PaeR7I CTCGAG 1 cut(s) 344
PaqCI CACCTGC 1 cut(s) 143
PcsI WCGNNNNNNNCGW 2 cut(s) 564, 623
PctI GAATGC 1 cut(s) 1020
PfeI GAWTC 4 cut(s) 359, 564, 830, 1117
PfoI TCCNGGA 2 cut(s) 15, 768
PkrI GCNGC 6 cut(s) 200, 288, 501, 613, 739, 783
PleI GAGTC 3 cut(s) 355, 430, 452
PluTI GGCGCC 1 cut(s) 432
PpsI GAGTC 3 cut(s) 355, 430, 452
PpuMI RGGWCCY 1 cut(s) 588
PshAI GACNNNNGTC 1 cut(s) 123
Psp124BI GAGCTC 1 cut(s) 956
Psp5II RGGWCCY 1 cut(s) 588
Psp6I CCWGG 1 cut(s) 956
PspEI GGTNACC 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 1 cut(s) 956
PspN4I GGNNCC 5 cut(s) 430, 468, 589, 590, 1130
PspPI GGNCC 3 cut(s) 96, 588, 835
PspPPI RGGWCCY 1 cut(s) 588
PspXI VCTCGAGB 1 cut(s) 344
RsaI GTAC 2 cut(s) 251, 576
RsaNI GTAC 2 cut(s) 250, 575
RseI CAYNNNNRTG 1 cut(s) 673
SacI GAGCTC 1 cut(s) 956
SalI GTCGAC 1 cut(s) 455
SaqAI TTAA 1 cut(s) 909
SatI GCNGC 6 cut(s) 199, 287, 500, 612, 738, 782
Sau3AI GATC 2 cut(s) 91, 816
Sau96I GGNCC 3 cut(s) 96, 588, 835
SchI GAGTC 3 cut(s) 356, 431, 452
ScrFI CCNGG 3 cut(s) 17, 770, 958
SduI GDGCHC 4 cut(s) 35, 471, 691, 956
SfoI GGCGCC 1 cut(s) 430
Sfr274I CTCGAG 1 cut(s) 344
SinI GGWCC 1 cut(s) 588
SlaI CTCGAG 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 673
SmlI CTYRAG 2 cut(s) 344, 446
SmoI CTYRAG 2 cut(s) 344, 446
Sse9I AATT 7 cut(s) 141, 236, 681, 822, 988, 1050, 1105
SsiI CCGC 8 cut(s) 130, 196, 280, 472, 737, 781, 784, 848
SspDI GGCGCC 1 cut(s) 428
SspMI CTAG 1 cut(s) 692
SstI GAGCTC 1 cut(s) 956
StyD4I CCNGG 3 cut(s) 15, 768, 956
StyI CCWWGG 1 cut(s) 580
TaaI ACNGT 1 cut(s) 442
TasI AATT 7 cut(s) 141, 236, 681, 822, 988, 1050, 1105
TauI GCSGC 2 cut(s) 740, 784
TfiI GAWTC 4 cut(s) 359, 564, 830, 1117
Tru1I TTAA 1 cut(s) 909
Tru9I TTAA 1 cut(s) 909
TscAI CASTG 3 cut(s) 424, 642, 1129
TseFI GTSAC 2 cut(s) 80, 125
TseI GCWGC 4 cut(s) 198, 286, 499, 611
Tsp45I GTSAC 2 cut(s) 80, 125
TspDTI ATGAA 2 cut(s) 1050, 1095
TspRI CASTG 3 cut(s) 424, 642, 1129
VpaK11BI GGWCC 1 cut(s) 588
XapI RAATTY 1 cut(s) 988
XhoI CTCGAG 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 456
XspI CTAG 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.