Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012930

Physical Location & Seq

Genomic Coordinates Reverse (-)

3197261 .. 3199112

Gene Structure 1852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG045800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCGACTCAATTCCCGGACGATTTCAAGTGCCCGATTTCGCTGGAAATAATGTCCGACCCGGTTATACTCCCTTCGGGTCACACCTTCGACCGGCCCAACATCCAACGCTGGCTCGACGCCGGCCACCGTACTTGCCCACTTACCAAACTACCCCTCCCCGAACACCCCTCCCTCATCCCCAACCATGCCCTCCGCAGCTTGATTTCCAATTATACCCTTCCCTCCCCTACACAATTACACAACACCCAGCTCCCCCACCAGAGCCAGAGCCAGAGCCAGCCCAACCAGCAACCCCAAACCCTAATCGCCACCCTGACTTCGGCGGCGTCGGGCCTGGACTCGAAGCTCGAGTCGCTCGACCAGCTCAACCGCCTGTCGAAGCGGGACGCGGCGTTTCGCGCCAAGCTGACGGAGTCCGGCGCGGTCGCCGCCGTGCTGAAGTGCGTGGACTCCGACGAGCCGAGCCTGCAGGAGAAGGCTCTGACTCTGCTGCTGAATGTGAGCTTGGACGACGACAACAAGGTGGGTCTGGTGGCGGAAGGAGCGATTGCTAGAGTCGTGGCGGTGCTGCAAGGCGGCTCGCCGAACAGCCGGGCCGTCGCGGCGACGATGTTGACCAGCTTGGCCGTCGTGGAGGTCAACAAGGCCACAATCGGGTCGTACCCGTATGCAATTCGGGCTCTTGTTTCGCTTCTCAGGGACGGCAAGGGCCGGGAGAAGAAAGAGGCGGCGACGGCTCTTTATGCTATCTGTTCGTTTCCGGACAATCGGCGGCGGGCGGTGGAGTGCGGTGCGGTTTCGATTTTGATCCGAATTGCGGATTCGGGTTTGGAGCGGGCCGTTGAGGTTTTGGGCCTGTTGGCCAAAAGCAAGGATGGGAGAGAAGAGATGCAGAGGTTTAGTGGGTGTGTGAGAATTTTAGTAAGGGTTTTAGAGAACGGGAGCTCCAGGGGAGCTCAGTATGCTCTGCTTACATTGAGTTCGCTCTGCCATTTCAGTGAGAAAATGTGTGCGGAAGCAAGAAAAGAAGGCGTCTTGGCGATTTGCATGCGTTTGGTTGAAGATGATAACGAAAAGATTAGAAAAAATGCTTCTTATTTGATTCAGGTTCTGGATGGGAACCATTCCATGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

379

Amino Acids

41.17

Weight (kDa)

8.04

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	6 - 72	2.5e-20	U-box domain
zf-RING_UBOX	PF13445	11 - 47	2e-06	RING-type zinc-finger
ARM_PUB	PF25598	113 - 375	1.5e-24	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	133 - 274	6.8e-07	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21350
fragaria_vesca	FvH4_3g03220
malus_domestica	MD05G1334100.v1.1 MD10G1309000.v1.1
prunus_persica	Prupe.4G031100_v2.0.a1 Prupe.4G031100_v2.0.a1
pyrus_communis	pycom05g30580 pycom10g26040
rosa_chinensis	RchiOBHm_Chr5g0004861
rosa_laevigata	RLG00000031267
rosa_multiflora	Rmu_sc0010871.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070760
rosa_rugosa	Rorug04G0414800
rosa_samantha	Rh5AG042300 Rh5BG042000 Rh5CG045800 Rh5DG042400
rosa_wichuraiana	Rw5G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	838
AccII	CGCG	4 cut(s)	392, 402, 425, 605
AccIII	TCCGGA	1 cut(s)	763
AclWI	GGATC	1 cut(s)	805
AcoI	YGGCCR	3 cut(s)	124, 627, 864
AcsI	RAATTY	1 cut(s)	918
AcuI	CTGAAG	1 cut(s)	461
AcyI	GRCGYC	3 cut(s)	120, 329, 1035
AfaI	GTAC	2 cut(s)	133, 665
AfiI	CCNNNNNNNGG	4 cut(s)	93, 322, 657, 820
AgsI	TTSAA	2 cut(s)	28, 1064
AjnI	CCWGG	2 cut(s)	336, 950
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AloI	GAACNNNNNNTCC	2 cut(s)	932, 964
AluBI	AGCT	9 cut(s)	201, 253, 349, 367, 409, 507, 624, 948, 959
AluI	AGCT	9 cut(s)	201, 253, 349, 367, 409, 507, 624, 948, 959
Alw21I	GWGCWC	2 cut(s)	950, 961
AlwI	GGATC	1 cut(s)	805
AlwNI	CAGNNNCTG	1 cut(s)	1114
Ama87I	CYCGRG	1 cut(s)	350
Aor13HI	TCCGGA	1 cut(s)	763
ApeKI	GCWGC	3 cut(s)	198, 493, 571
ApoI	RAATTY	1 cut(s)	918
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AspLEI	GCGC	2 cut(s)	404, 425
AspS9I	GGNCC	6 cut(s)	96, 334, 597, 712, 840, 856
AsuC2I	CCSGG	4 cut(s)	17, 62, 596, 716
AvaI	CYCGRG	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	866
BanII	GRGCYC	3 cut(s)	685, 950, 961
Bbv12I	GWGCWC	2 cut(s)	950, 961
BbvI	GCAGC	3 cut(s)	210, 480, 558
BccI	CCATC	2 cut(s)	872, 1112
BceAI	ACGGC	6 cut(s)	419, 584, 614, 721, 753, 827
BcgI	CGANNNNNNTGC	2 cut(s)	1033, 1067
BciT130I	CCWGG	2 cut(s)	338, 952
BcnI	CCSGG	4 cut(s)	17, 62, 596, 716
BfaI	CTAG	1 cut(s)	555
BfmI	CTRYAG	1 cut(s)	470
BglI	GCCNNNNNGGC	1 cut(s)	605
Bme1390I	CCNGG	6 cut(s)	17, 62, 338, 596, 716, 952
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	6 cut(s)	96, 334, 597, 712, 840, 856
BmiI	GGNNCC	1 cut(s)	1124
BmrFI	CCNGG	6 cut(s)	17, 62, 338, 596, 716, 952
BmsI	GCATC	1 cut(s)	882
BpmI	CTGGAG	1 cut(s)	934
BpuMI	CCSGG	4 cut(s)	17, 62, 596, 716
BsaBI	GATNNNNATC	1 cut(s)	809
BsaHI	GRCGYC	3 cut(s)	120, 329, 1035
BsaJI	CCNNGG	1 cut(s)	951
BsaWI	WCCGGW	1 cut(s)	763
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 932, 962
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 322, 657, 820
Bse118I	RCCGGY	2 cut(s)	93, 122
Bse8I	GATNNNNATC	1 cut(s)	809
BseAI	TCCGGA	1 cut(s)	763
BseBI	CCWGG	2 cut(s)	338, 952
BseDI	CCNNGG	1 cut(s)	951
BseGI	GGATG	4 cut(s)	102, 177, 883, 1123
BseJI	GATNNNNATC	1 cut(s)	809
BseLI	CCNNNNNNNGG	4 cut(s)	93, 322, 657, 820
BseMII	CTCAG	2 cut(s)	712, 974
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	3 cut(s)	210, 480, 558
BseYI	CCCAGC	1 cut(s)	249
Bsh1236I	CGCG	4 cut(s)	392, 402, 425, 605
Bsh1285I	CGRYCG	2 cut(s)	94, 429
BsiEI	CGRYCG	2 cut(s)	94, 429
BsiHKAI	GWGCWC	2 cut(s)	950, 961
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	8 cut(s)	17, 62, 94, 123, 420, 595, 715, 764
BslFI	GGGAC	2 cut(s)	401, 716
BslI	CCNNNNNNNGG	4 cut(s)	93, 322, 657, 820
BsmFI	GGGAC	2 cut(s)	401, 716
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	4 cut(s)	35, 685, 950, 961
Bsp13I	TCCGGA	1 cut(s)	763
Bsp143I	GATC	1 cut(s)	810
BspCNI	CTCAG	2 cut(s)	711, 973
BspEI	TCCGGA	1 cut(s)	763
BspFNI	CGCG	4 cut(s)	392, 402, 425, 605
BspLI	GGNNCC	1 cut(s)	1124
BspMAI	CTGCAG	1 cut(s)	474
BspPI	GGATC	1 cut(s)	805
BsrBI	CCGCTC	1 cut(s)	838
BsrFI	RCCGGY	2 cut(s)	93, 122
BssAI	RCCGGY	2 cut(s)	93, 122
BssECI	CCNNGG	1 cut(s)	951
BssMI	GATC	1 cut(s)	810
BssNI	GRCGYC	3 cut(s)	120, 329, 1035
Bst2UI	CCWGG	2 cut(s)	338, 952
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	882
BstACI	GRCGYC	3 cut(s)	120, 329, 1035
BstC8I	GCNNGC	8 cut(s)	113, 124, 281, 470, 584, 780, 840, 1052
BstDEI	CTNAG	2 cut(s)	698, 960
BstF5I	GGATG	4 cut(s)	102, 177, 883, 1123
BstFNI	CGCG	4 cut(s)	392, 402, 425, 605
BstHHI	GCGC	2 cut(s)	404, 425
BstKTI	GATC	1 cut(s)	813
BstMBI	GATC	1 cut(s)	810
BstMCI	CGRYCG	2 cut(s)	94, 429
BstNI	CCWGG	2 cut(s)	338, 952
BstNSI	RCATGY	1 cut(s)	1054
BstSCI	CCNGG	6 cut(s)	15, 60, 336, 594, 714, 950
BstSFI	CTRYAG	1 cut(s)	470
BstSLI	GKGCMC	1 cut(s)	35
BstUI	CGCG	4 cut(s)	392, 402, 425, 605
BstV1I	GCAGC	3 cut(s)	210, 480, 558
BtsCI	GGATG	4 cut(s)	102, 177, 883, 1123
BtsIMutI	CAGTG	1 cut(s)	1006
Cac8I	GCNNGC	8 cut(s)	113, 124, 281, 470, 584, 780, 840, 1052
CaiI	CAGNNNCTG	1 cut(s)	1114
CfoI	GCGC	2 cut(s)	404, 425
Cfr10I	RCCGGY	2 cut(s)	93, 122
Cfr13I	GGNCC	6 cut(s)	96, 334, 597, 712, 840, 856
CseI	GACGC	4 cut(s)	128, 318, 398, 1024
Csp6I	GTAC	2 cut(s)	132, 664
CspCI	CAANNNNNGTGG	2 cut(s)	116, 151
CviAII	CATG	3 cut(s)	188, 1051, 1132
CviQI	GTAC	2 cut(s)	132, 664
DdeI	CTNAG	2 cut(s)	698, 960
DpnI	GATC	1 cut(s)	812
DpnII	GATC	1 cut(s)	810
EaeI	YGGCCR	3 cut(s)	124, 627, 864
Eam1104I	CTCTTC	1 cut(s)	882
EarI	CTCTTC	1 cut(s)	882
EciI	GGCGGA	1 cut(s)	554
Ecl136II	GAGCTC	2 cut(s)	948, 959
Eco24I	GRGCYC	3 cut(s)	685, 950, 961
Eco53kI	GAGCTC	2 cut(s)	948, 959
Eco57I	CTGAAG	1 cut(s)	461
Eco88I	CYCGRG	1 cut(s)	350
EcoICRI	GAGCTC	2 cut(s)	948, 959
EcoRII	CCWGG	2 cut(s)	336, 950
EcoT38I	GRGCYC	3 cut(s)	685, 950, 961
FaeI	CATG	3 cut(s)	191, 1054, 1135
FaiI	YATR	8 cut(s)	68, 189, 216, 672, 747, 966, 1052, 1133
FaqI	GGGAC	2 cut(s)	401, 716
FatI	CATG	3 cut(s)	187, 1050, 1131
FauI	CCCGC	3 cut(s)	378, 771, 831
FokI	GGATG	4 cut(s)	89, 164, 890, 1130
FriOI	GRGCYC	3 cut(s)	685, 950, 961
FspBI	CTAG	1 cut(s)	555
GlaI	GCGC	2 cut(s)	403, 424
GsaI	CCCAGC	1 cut(s)	253
GsuI	CTGGAG	1 cut(s)	934
HapII	CCGG	8 cut(s)	17, 62, 94, 123, 420, 595, 715, 764
HgaI	GACGC	4 cut(s)	128, 318, 398, 1024
HhaI	GCGC	2 cut(s)	404, 425
Hin1I	GRCGYC	3 cut(s)	120, 329, 1035
Hin1II	CATG	3 cut(s)	191, 1054, 1135
Hin6I	GCGC	2 cut(s)	402, 423
HinP1I	GCGC	2 cut(s)	402, 423
HincII	GTYRAC	2 cut(s)	618, 643
HindII	GTYRAC	2 cut(s)	618, 643
HinfI	GANTC	9 cut(s)	7, 341, 353, 416, 452, 487, 558, 824, 1105
HpaII	CCGG	8 cut(s)	17, 62, 94, 123, 420, 595, 715, 764
Hpy166II	GTNNAC	3 cut(s)	451, 618, 643
Hpy188I	TCNGA	4 cut(s)	58, 457, 486, 815
Hpy188III	TCNNGA	2 cut(s)	764, 1115
Hpy8I	GTNNAC	3 cut(s)	451, 618, 643
Hpy99I	CGWCG	8 cut(s)	122, 334, 461, 518, 605, 613, 635, 739
HpyAV	CCTTC	6 cut(s)	84, 97, 230, 472, 536, 1025
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	5 cut(s)	472, 574, 674, 895, 1050
HpyF3I	CTNAG	2 cut(s)	698, 960
Hsp92I	GRCGYC	3 cut(s)	120, 329, 1035
Hsp92II	CATG	3 cut(s)	191, 1054, 1135
HspAI	GCGC	2 cut(s)	402, 423
Kpn2I	TCCGGA	1 cut(s)	763
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	810
LmnI	GCTCC	6 cut(s)	258, 545, 835, 945, 953, 956
Lsp1109I	GCAGC	3 cut(s)	210, 480, 558
LweI	GCATC	1 cut(s)	882
MaeI	CTAG	1 cut(s)	555
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	1 cut(s)	812
MbiI	CCGCTC	1 cut(s)	838
MboI	GATC	1 cut(s)	810
MboII	GAAGA	3 cut(s)	733, 899, 1076
MhlI	GDGCHC	4 cut(s)	35, 685, 950, 961
MlsI	TGGCCA	1 cut(s)	866
MluCI	AATT	6 cut(s)	11, 211, 236, 675, 816, 918
MluNI	TGGCCA	1 cut(s)	866
MlyI	GAGTC	6 cut(s)	335, 362, 425, 446, 481, 567
MmeI	TCCRAC	3 cut(s)	81, 130, 480
MnlI	CCTC	9 cut(s)	167, 181, 185, 203, 235, 631, 721, 841, 891
Mox20I	TGGCCA	1 cut(s)	866
MroI	TCCGGA	1 cut(s)	763
MroNI	GCCGGC	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	866
MslI	CAYNNNNRTG	1 cut(s)	999
Msp20I	TGGCCA	1 cut(s)	866
MspI	CCGG	8 cut(s)	17, 62, 94, 123, 420, 595, 715, 764
MspR9I	CCNGG	6 cut(s)	17, 62, 338, 596, 716, 952
MvaI	CCWGG	2 cut(s)	338, 952
MvnI	CGCG	4 cut(s)	392, 402, 425, 605
NaeI	GCCGGC	1 cut(s)	124
NciI	CCSGG	4 cut(s)	17, 62, 596, 716
NdeII	GATC	1 cut(s)	810
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	3 cut(s)	191, 1054, 1135
NlaIV	GGNNCC	1 cut(s)	1124
NmeAIII	GCCGAG	1 cut(s)	489
NmuCI	GTSAC	1 cut(s)	80
NspI	RCATGY	1 cut(s)	1054
PaeI	GCATGC	1 cut(s)	1054
PaeR7I	CTCGAG	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PdiI	GCCGGC	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	824, 1105
PflFI	GACNNNGTC	1 cut(s)	415
PfoI	TCCNGGA	1 cut(s)	15
PleI	GAGTC	6 cut(s)	335, 361, 424, 446, 481, 566
PpsI	GAGTC	6 cut(s)	335, 361, 424, 446, 481, 566
Psp124BI	GAGCTC	2 cut(s)	950, 961
Psp6I	CCWGG	2 cut(s)	336, 950
PspFI	CCCAGC	1 cut(s)	249
PspGI	CCWGG	2 cut(s)	336, 950
PspN4I	GGNNCC	1 cut(s)	1124
PspPI	GGNCC	6 cut(s)	96, 334, 597, 712, 840, 856
PspXI	VCTCGAGB	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	474
PstNI	CAGNNNCTG	1 cut(s)	1114
PsyI	GACNNNGTC	1 cut(s)	415
RsaI	GTAC	2 cut(s)	133, 665
RsaNI	GTAC	2 cut(s)	132, 664
RseI	CAYNNNNRTG	1 cut(s)	999
SacI	GAGCTC	2 cut(s)	950, 961
Sau3AI	GATC	1 cut(s)	810
Sau96I	GGNCC	6 cut(s)	96, 334, 597, 712, 840, 856
SbfI	CCTGCAGG	1 cut(s)	474
SchI	GAGTC	6 cut(s)	335, 362, 425, 446, 481, 567
ScrFI	CCNGG	6 cut(s)	17, 62, 338, 596, 716, 952
SdaI	CCTGCAGG	1 cut(s)	474
SduI	GDGCHC	4 cut(s)	35, 685, 950, 961
SfaNI	GCATC	1 cut(s)	882
SfcI	CTRYAG	1 cut(s)	470
Sfr274I	CTCGAG	1 cut(s)	350
SlaI	CTCGAG	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	999
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SphI	GCATGC	1 cut(s)	1054
Sse8387I	CCTGCAGG	1 cut(s)	474
Sse9I	AATT	6 cut(s)	11, 211, 236, 675, 816, 918
SspMI	CTAG	1 cut(s)	555
SstI	GAGCTC	2 cut(s)	950, 961
StyD4I	CCNGG	6 cut(s)	15, 60, 336, 594, 714, 950
TaaI	ACNGT	1 cut(s)	131
TaqI	TCGA	7 cut(s)	90, 117, 344, 351, 360, 380, 803
TasI	AATT	6 cut(s)	11, 211, 236, 675, 816, 918
TauI	GCSGC	7 cut(s)	329, 395, 434, 582, 608, 734, 778
TfiI	GAWTC	2 cut(s)	824, 1105
TscAI	CASTG	1 cut(s)	1006
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	3 cut(s)	198, 493, 571
Tsp45I	GTSAC	1 cut(s)	80
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	1006
Tth111I	GACNNNGTC	1 cut(s)	415
XapI	RAATTY	1 cut(s)	918
XceI	RCATGY	1 cut(s)	1054
XhoI	CTCGAG	1 cut(s)	350
XspI	CTAG	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.