Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0012930

Physical Location & Seq

Genomic Coordinates Reverse (-)

4111396 .. 4112529

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G004090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCGACTCAATTCCCGGACGATTTCAAGTGCCCGATTTCGCTGGAAATAATGTCCGACCCGGTTATACTCCCTTCGGGTCACACCTTCGACCGGCCCAACATCCAACGCTGGCTCGACGCCGGCCACCGTACTTGCCCACTTACCAAACTACCCCTCCCCGAACACCCCTCCCTCATCCCCAACCATGCCCTCCGCAGCTTGATTTCCAATTATACCCTTCCCTCCCCTACACAATTACACAACACCCAGCTCCCCAACCAGAGCCAGAGCCAGCCCAACCAGCAACCCCAAACCCTAATCGCCACCCTGACTTCGGCGGCGTCGGGCCTGGACTCGAAGCTCGAGTCGCTCGACCAGCTCAACCGCCTGTCGAAGCGGGACGCGGCGTTTCGCGCCAAGCTGACGGAGTCCGGCGCCGTCGCCGCCGTGCTGAAGTGCGTGGACTCCGACGAGCCGAGCCTGCAGGAGAAGGCTCTGACTCTGCTGCTGAATGCGAGCCTGGACGACGACAACAAGGTGGGTCTGGTGGCGGAAGGAGCGATTGCTAGAGTCGTGGCGGTGCTGCAAGGCGGCTCGCCGAACAGCCGGGCCGTCGCGGCGACGATGTTGACCAGCTTGGCGGTCGTGGAGGTCAACAAGGCCACAATCGGGTCGTACCCGTATGCAATTCGGGCTCTTGTTTCGCTTCTCAGGGACGGCAAGGGCCGGGAGAAGAAAGAGGCGGCGACGGCGCTTTATGCTATCTGTTCGTTTCCGGACAATCGGCGGCGGGCGGTGGAGTGCGGTGCGGTTTCGATTTTGATCCGAATTGCGGATTCGGGTTTGGAGCGGGCCGTTGAGGTTTTGGGCCTGTTGGCGAAAAGCAAGGATGGGAGAGAAGAGATGCAGAGGTTTAGTGGGTGTGTGAGGATTTTAGTGAGGGTTTTAGAGAACGGGAGCTCCAGGGGAGCTCAGTATGCGCTGCTTACATTGAGTTCGCTCTGCCATTTCAGTGAGAAAATGTGTGCGGAAGCAAGAAAAGAAGGCGTCTTGGCGATTTGCATGCGTTTGGTTGAAGATGATAACGAAAAGATTAGAAAAAATGCTTCTTATTTGATTCAGGTTCTGGATGGGAACCATTCCATGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

377

Amino Acids

40.9

Weight (kDa)

8.04

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	6 - 72	2.4e-20	U-box domain
zf-RING_UBOX	PF13445	11 - 47	2e-06	RING-type zinc-finger
ARM_PUB	PF25598	111 - 373	3.2e-24	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	131 - 273	1e-06	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21350
fragaria_vesca	FvH4_3g03220
malus_domestica	MD05G1334100.v1.1 MD10G1309000.v1.1
prunus_persica	Prupe.4G031100_v2.0.a1 Prupe.4G031100_v2.0.a1
pyrus_communis	pycom05g30580 pycom10g26040
rosa_chinensis	RchiOBHm_Chr5g0004861
rosa_laevigata	RLG00000031267
rosa_multiflora	Rmu_sc0010871.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070760
rosa_rugosa	Rorug04G0414800
rosa_samantha	Rh5AG042300 Rh5BG042000 Rh5CG045800 Rh5DG042400
rosa_wichuraiana	Rw5G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	416
AccBSI	CCGCTC	1 cut(s)	832
AccII	CGCG	3 cut(s)	386, 396, 599
AccIII	TCCGGA	1 cut(s)	757
AclWI	GGATC	1 cut(s)	799
AcoI	YGGCCR	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	455
AcyI	GRCGYC	4 cut(s)	120, 323, 417, 1029
AfaI	GTAC	2 cut(s)	133, 659
AfiI	CCNNNNNNNGG	4 cut(s)	93, 316, 651, 814
AgsI	TTSAA	2 cut(s)	28, 1058
AjnI	CCWGG	3 cut(s)	330, 501, 944
AloI	GAACNNNNNNTCC	2 cut(s)	926, 958
AluBI	AGCT	8 cut(s)	201, 253, 343, 361, 403, 618, 942, 953
AluI	AGCT	8 cut(s)	201, 253, 343, 361, 403, 618, 942, 953
Alw21I	GWGCWC	2 cut(s)	944, 955
AlwI	GGATC	1 cut(s)	799
AlwNI	CAGNNNCTG	1 cut(s)	1108
Ama87I	CYCGRG	1 cut(s)	344
Aor13HI	TCCGGA	1 cut(s)	757
AoxI	GGCC	8 cut(s)	95, 124, 328, 591, 642, 706, 834, 850
ApeKI	GCWGC	4 cut(s)	198, 487, 565, 964
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
AspLEI	GCGC	4 cut(s)	398, 419, 736, 964
AspS9I	GGNCC	6 cut(s)	96, 328, 591, 706, 834, 850
AsuC2I	CCSGG	4 cut(s)	17, 62, 590, 710
AvaI	CYCGRG	1 cut(s)	344
BaeGI	GKGCMC	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	3 cut(s)	679, 944, 955
Bbv12I	GWGCWC	2 cut(s)	944, 955
BbvI	GCAGC	4 cut(s)	210, 474, 552, 951
BccI	CCATC	2 cut(s)	866, 1106
BceAI	ACGGC	6 cut(s)	404, 413, 578, 715, 747, 821
BcgI	CGANNNNNNTGC	2 cut(s)	1027, 1061
BciT130I	CCWGG	3 cut(s)	332, 503, 946
BcnI	CCSGG	4 cut(s)	17, 62, 590, 710
BfaI	CTAG	1 cut(s)	549
BfmI	CTRYAG	1 cut(s)	464
BfoI	RGCGCY	2 cut(s)	420, 737
BglI	GCCNNNNNGGC	1 cut(s)	599
Bme1390I	CCNGG	7 cut(s)	17, 62, 332, 503, 590, 710, 946
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	6 cut(s)	96, 328, 591, 706, 834, 850
BmiI	GGNNCC	2 cut(s)	418, 1118
BmrFI	CCNGG	7 cut(s)	17, 62, 332, 503, 590, 710, 946
BmsI	GCATC	1 cut(s)	876
BpmI	CTGGAG	1 cut(s)	928
BpuMI	CCSGG	4 cut(s)	17, 62, 590, 710
BsaBI	GATNNNNATC	1 cut(s)	803
BsaHI	GRCGYC	4 cut(s)	120, 323, 417, 1029
BsaJI	CCNNGG	1 cut(s)	945
BsaWI	WCCGGW	1 cut(s)	757
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 926, 956
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 316, 651, 814
Bse118I	RCCGGY	2 cut(s)	93, 122
Bse8I	GATNNNNATC	1 cut(s)	803
BseAI	TCCGGA	1 cut(s)	757
BseBI	CCWGG	3 cut(s)	332, 503, 946
BseDI	CCNNGG	1 cut(s)	945
BseGI	GGATG	4 cut(s)	102, 177, 877, 1117
BseJI	GATNNNNATC	1 cut(s)	803
BseLI	CCNNNNNNNGG	4 cut(s)	93, 316, 651, 814
BseMII	CTCAG	2 cut(s)	706, 968
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	4 cut(s)	210, 474, 552, 951
BseYI	CCCAGC	1 cut(s)	249
Bsh1236I	CGCG	3 cut(s)	386, 396, 599
Bsh1285I	CGRYCG	2 cut(s)	94, 627
BshFI	GGCC	8 cut(s)	97, 126, 330, 593, 644, 708, 836, 852
BshNI	GGYRCC	1 cut(s)	416
BsiEI	CGRYCG	2 cut(s)	94, 627
BsiHKAI	GWGCWC	2 cut(s)	944, 955
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	8 cut(s)	17, 62, 94, 123, 414, 589, 709, 758
BslFI	GGGAC	2 cut(s)	395, 710
BslI	CCNNNNNNNGG	4 cut(s)	93, 316, 651, 814
BsmFI	GGGAC	2 cut(s)	395, 710
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	8 cut(s)	97, 126, 330, 593, 644, 708, 836, 852
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	4 cut(s)	35, 679, 944, 955
Bsp13I	TCCGGA	1 cut(s)	757
Bsp143I	GATC	1 cut(s)	804
BspANI	GGCC	8 cut(s)	97, 126, 330, 593, 644, 708, 836, 852
BspCNI	CTCAG	2 cut(s)	705, 967
BspEI	TCCGGA	1 cut(s)	757
BspFNI	CGCG	3 cut(s)	386, 396, 599
BspLI	GGNNCC	2 cut(s)	418, 1118
BspMAI	CTGCAG	1 cut(s)	468
BspPI	GGATC	1 cut(s)	799
BspT107I	GGYRCC	1 cut(s)	416
BsrBI	CCGCTC	1 cut(s)	832
BsrFI	RCCGGY	2 cut(s)	93, 122
BssAI	RCCGGY	2 cut(s)	93, 122
BssECI	CCNNGG	1 cut(s)	945
BssMI	GATC	1 cut(s)	804
BssNI	GRCGYC	4 cut(s)	120, 323, 417, 1029
Bst2UI	CCWGG	3 cut(s)	332, 503, 946
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	876
BstACI	GRCGYC	4 cut(s)	120, 323, 417, 1029
BstC8I	GCNNGC	9 cut(s)	113, 124, 275, 464, 499, 578, 774, 834, 1046
BstDEI	CTNAG	2 cut(s)	692, 954
BstF5I	GGATG	4 cut(s)	102, 177, 877, 1117
BstFNI	CGCG	3 cut(s)	386, 396, 599
BstH2I	RGCGCY	2 cut(s)	420, 737
BstHHI	GCGC	4 cut(s)	398, 419, 736, 964
BstKTI	GATC	1 cut(s)	807
BstMBI	GATC	1 cut(s)	804
BstMCI	CGRYCG	2 cut(s)	94, 627
BstNI	CCWGG	3 cut(s)	332, 503, 946
BstNSI	RCATGY	1 cut(s)	1048
BstSCI	CCNGG	7 cut(s)	15, 60, 330, 501, 588, 708, 944
BstSFI	CTRYAG	1 cut(s)	464
BstSLI	GKGCMC	1 cut(s)	35
BstUI	CGCG	3 cut(s)	386, 396, 599
BstV1I	GCAGC	4 cut(s)	210, 474, 552, 951
BsuRI	GGCC	8 cut(s)	97, 126, 330, 593, 644, 708, 836, 852
BtsCI	GGATG	4 cut(s)	102, 177, 877, 1117
BtsIMutI	CAGTG	1 cut(s)	1000
Cac8I	GCNNGC	9 cut(s)	113, 124, 275, 464, 499, 578, 774, 834, 1046
CaiI	CAGNNNCTG	1 cut(s)	1108
CfoI	GCGC	4 cut(s)	398, 419, 736, 964
Cfr10I	RCCGGY	2 cut(s)	93, 122
Cfr13I	GGNCC	6 cut(s)	96, 328, 591, 706, 834, 850
CseI	GACGC	4 cut(s)	128, 312, 392, 1018
Csp6I	GTAC	2 cut(s)	132, 658
CspCI	CAANNNNNGTGG	2 cut(s)	116, 151
CviAII	CATG	3 cut(s)	188, 1045, 1126
CviQI	GTAC	2 cut(s)	132, 658
DdeI	CTNAG	2 cut(s)	692, 954
DinI	GGCGCC	1 cut(s)	418
DpnI	GATC	1 cut(s)	806
DpnII	GATC	1 cut(s)	804
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	876
EarI	CTCTTC	1 cut(s)	876
EciI	GGCGGA	1 cut(s)	548
Ecl136II	GAGCTC	2 cut(s)	942, 953
Eco24I	GRGCYC	3 cut(s)	679, 944, 955
Eco53kI	GAGCTC	2 cut(s)	942, 953
Eco57I	CTGAAG	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	344
EcoICRI	GAGCTC	2 cut(s)	942, 953
EcoRII	CCWGG	3 cut(s)	330, 501, 944
EcoT38I	GRGCYC	3 cut(s)	679, 944, 955
EgeI	GGCGCC	1 cut(s)	418
EheI	GGCGCC	1 cut(s)	418
FaeI	CATG	3 cut(s)	191, 1048, 1129
FaiI	YATR	8 cut(s)	68, 189, 216, 666, 741, 960, 1046, 1127
FaqI	GGGAC	2 cut(s)	395, 710
FatI	CATG	3 cut(s)	187, 1044, 1125
FauI	CCCGC	3 cut(s)	372, 765, 825
FokI	GGATG	4 cut(s)	89, 164, 884, 1124
FriOI	GRGCYC	3 cut(s)	679, 944, 955
FspBI	CTAG	1 cut(s)	549
GlaI	GCGC	4 cut(s)	397, 418, 735, 963
GsaI	CCCAGC	1 cut(s)	253
GsuI	CTGGAG	1 cut(s)	928
HaeII	RGCGCY	2 cut(s)	420, 737
HaeIII	GGCC	8 cut(s)	97, 126, 330, 593, 644, 708, 836, 852
HapII	CCGG	8 cut(s)	17, 62, 94, 123, 414, 589, 709, 758
HgaI	GACGC	4 cut(s)	128, 312, 392, 1018
HhaI	GCGC	4 cut(s)	398, 419, 736, 964
Hin1I	GRCGYC	4 cut(s)	120, 323, 417, 1029
Hin1II	CATG	3 cut(s)	191, 1048, 1129
Hin6I	GCGC	4 cut(s)	396, 417, 734, 962
HinP1I	GCGC	4 cut(s)	396, 417, 734, 962
HincII	GTYRAC	2 cut(s)	612, 637
HindII	GTYRAC	2 cut(s)	612, 637
HinfI	GANTC	9 cut(s)	7, 335, 347, 410, 446, 481, 552, 818, 1099
HpaII	CCGG	8 cut(s)	17, 62, 94, 123, 414, 589, 709, 758
Hpy166II	GTNNAC	3 cut(s)	445, 612, 637
Hpy188I	TCNGA	4 cut(s)	58, 451, 480, 809
Hpy188III	TCNNGA	2 cut(s)	758, 1109
Hpy8I	GTNNAC	3 cut(s)	445, 612, 637
Hpy99I	CGWCG	8 cut(s)	122, 328, 425, 455, 512, 599, 607, 733
HpyAV	CCTTC	6 cut(s)	84, 97, 230, 466, 530, 1019
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	5 cut(s)	466, 568, 668, 889, 1044
HpyF3I	CTNAG	2 cut(s)	692, 954
Hsp92I	GRCGYC	4 cut(s)	120, 323, 417, 1029
Hsp92II	CATG	3 cut(s)	191, 1048, 1129
HspAI	GCGC	4 cut(s)	396, 417, 734, 962
KasI	GGCGCC	1 cut(s)	416
Kpn2I	TCCGGA	1 cut(s)	757
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	804
LmnI	GCTCC	6 cut(s)	258, 539, 829, 939, 947, 950
Lsp1109I	GCAGC	4 cut(s)	210, 474, 552, 951
LweI	GCATC	1 cut(s)	876
MaeI	CTAG	1 cut(s)	549
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	1 cut(s)	806
MbiI	CCGCTC	1 cut(s)	832
MboI	GATC	1 cut(s)	804
MboII	GAAGA	3 cut(s)	727, 893, 1070
MhlI	GDGCHC	4 cut(s)	35, 679, 944, 955
MluCI	AATT	5 cut(s)	11, 211, 236, 669, 810
Mly113I	GGCGCC	1 cut(s)	417
MlyI	GAGTC	6 cut(s)	329, 356, 419, 440, 475, 561
MmeI	TCCRAC	3 cut(s)	81, 130, 474
MroI	TCCGGA	1 cut(s)	757
MroNI	GCCGGC	1 cut(s)	122
MslI	CAYNNNNRTG	1 cut(s)	993
MspI	CCGG	8 cut(s)	17, 62, 94, 123, 414, 589, 709, 758
MspR9I	CCNGG	7 cut(s)	17, 62, 332, 503, 590, 710, 946
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	3 cut(s)	332, 503, 946
MvnI	CGCG	3 cut(s)	386, 396, 599
NaeI	GCCGGC	1 cut(s)	124
NarI	GGCGCC	1 cut(s)	417
NciI	CCSGG	4 cut(s)	17, 62, 590, 710
NdeII	GATC	1 cut(s)	804
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	3 cut(s)	191, 1048, 1129
NlaIV	GGNNCC	2 cut(s)	418, 1118
NmeAIII	GCCGAG	1 cut(s)	483
NmuCI	GTSAC	1 cut(s)	80
NspI	RCATGY	1 cut(s)	1048
PaeI	GCATGC	1 cut(s)	1048
PaeR7I	CTCGAG	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PctI	GAATGC	1 cut(s)	499
PdiI	GCCGGC	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	818, 1099
PflFI	GACNNNGTC	1 cut(s)	409
PfoI	TCCNGGA	1 cut(s)	15
PleI	GAGTC	6 cut(s)	329, 355, 418, 440, 475, 560
PluTI	GGCGCC	1 cut(s)	420
PpsI	GAGTC	6 cut(s)	329, 355, 418, 440, 475, 560
Psp124BI	GAGCTC	2 cut(s)	944, 955
Psp6I	CCWGG	3 cut(s)	330, 501, 944
PspFI	CCCAGC	1 cut(s)	249
PspGI	CCWGG	3 cut(s)	330, 501, 944
PspN4I	GGNNCC	2 cut(s)	418, 1118
PspPI	GGNCC	6 cut(s)	96, 328, 591, 706, 834, 850
PspXI	VCTCGAGB	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	468
PstNI	CAGNNNCTG	1 cut(s)	1108
PsyI	GACNNNGTC	1 cut(s)	409
RsaI	GTAC	2 cut(s)	133, 659
RsaNI	GTAC	2 cut(s)	132, 658
RseI	CAYNNNNRTG	1 cut(s)	993
SacI	GAGCTC	2 cut(s)	944, 955
Sau3AI	GATC	1 cut(s)	804
Sau96I	GGNCC	6 cut(s)	96, 328, 591, 706, 834, 850
SbfI	CCTGCAGG	1 cut(s)	468
SchI	GAGTC	6 cut(s)	329, 356, 419, 440, 475, 561
ScrFI	CCNGG	7 cut(s)	17, 62, 332, 503, 590, 710, 946
SdaI	CCTGCAGG	1 cut(s)	468
SduI	GDGCHC	4 cut(s)	35, 679, 944, 955
SfaNI	GCATC	1 cut(s)	876
SfcI	CTRYAG	1 cut(s)	464
SfoI	GGCGCC	1 cut(s)	418
Sfr274I	CTCGAG	1 cut(s)	344
SlaI	CTCGAG	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	993
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SphI	GCATGC	1 cut(s)	1048
Sse8387I	CCTGCAGG	1 cut(s)	468
Sse9I	AATT	5 cut(s)	11, 211, 236, 669, 810
SspDI	GGCGCC	1 cut(s)	416
SspMI	CTAG	1 cut(s)	549
SstI	GAGCTC	2 cut(s)	944, 955
StyD4I	CCNGG	7 cut(s)	15, 60, 330, 501, 588, 708, 944
TaaI	ACNGT	1 cut(s)	131
TaqI	TCGA	7 cut(s)	90, 117, 338, 345, 354, 374, 797
TasI	AATT	5 cut(s)	11, 211, 236, 669, 810
TauI	GCSGC	7 cut(s)	323, 389, 428, 576, 602, 728, 772
TfiI	GAWTC	2 cut(s)	818, 1099
TscAI	CASTG	1 cut(s)	1000
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	4 cut(s)	198, 487, 565, 964
Tsp45I	GTSAC	1 cut(s)	80
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	1 cut(s)	1000
Tth111I	GACNNNGTC	1 cut(s)	409
XceI	RCATGY	1 cut(s)	1048
XhoI	CTCGAG	1 cut(s)	344
XspI	CTAG	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.