Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012930

Physical Location & Seq

Genomic Coordinates Reverse (-)

1446928 .. 1451113

Gene Structure 4186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G031100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCGACTCAGTTCCCGGACGATTTCAAGTGCCCGATTTCGCTCGAAATAATGTCCGACCCGGTTATACTCTCTTCGGGTCACACCTTTGATCGGGCCTCCATCCAACGCTGGCTTGACGCCGGCCACCGCACCTGCCCTATTACCAAATTGCCCCTTCCCGACCACCCTTCCCTCATCCCCAACCACGCCCTCCGCAGCCTGATTTCCAGTTATACCCTTCTCTCCCCTGCCAAATTACAACACCATCATCAACACCACCACCAATACCACCACCACCACCAACGCCACTGCCAACCCCCAACCCTAATCTCATCGCTCACTGCCCGAGCTTCAACCCTCGAGTCCAAGCTCGACTCGCTCGACCAGCTCGCACGCCTCTCCAAGCGCGACTCCGCCTTTCGCGCCAAACTCACCGAGTCAGGCGCCGTCTCGGCCGTCCTCAAGTGTGTTGACTCGGACGAGCCGCGCCTCCAAGAAAAGGCCCTAACTTTGCTGCTCAATGTCAGTTTGGACGACGATAACAAAGTGGGTCTTGTAGCCGAGGGAGCCATCGCTCGAATCGTAACGGTGCTGCAAGGCGGTTCCCCCAATAGCCGAGCCGTGGCGGCAACCATGTTGACGAGCTTAGCGGTTGTGGAGGTCAATAAGGCTACAATTGGGGCATACCCTTATGCAATTCGGGCGCTGGTTTCGCTTCTTAGGGACGGAAAAAGTCGAGAGAAGAAAGAGGCGGCTACGGCGCTTTACACCATCTGTTTGTTCCCGGATAATCGGCGCCGGGCCGTGGAATGTGGGGCGGTGTCGATTTTGATCCGAATTGCCGAATCGGGCCTGGAACGGGCTGTCGAAGTTCTGGGTCTATTGGCTAAGTGCAGGGAAGGTAGGGAAGAGATGGAGAGGTTTAATGGGTGTGTGGGGATATTAGTGAGGGTTTTGGAGAATGGAAGCTCAAGGGGGGTTCAATATGCGCTCCTTACTTTGAATTCACTCTGTTCTTTTAGTGAACCAATGTGTCTGGAAGCTAGAAATGAAGGGGTTTTGGCTATTTGTGTGGGTTTGGTTGAAAACGATAATGAAAGGATTCGAAAAAATGCTTCAAATTTGGTTCAGGTTCTTAGTGGTAACCATTCCATGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

381

Amino Acids

41.63

Weight (kDa)

8.46

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21350
fragaria_vesca	FvH4_3g03220
malus_domestica	MD05G1334100.v1.1 MD10G1309000.v1.1
prunus_persica	Prupe.4G031100_v2.0.a1 Prupe.4G031100_v2.0.a1
pyrus_communis	pycom05g30580 pycom10g26040
rosa_chinensis	RchiOBHm_Chr5g0004861
rosa_laevigata	RLG00000031267
rosa_multiflora	Rmu_sc0010871.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070760
rosa_rugosa	Rorug04G0414800
rosa_samantha	Rh5AG042300 Rh5BG042000 Rh5CG045800 Rh5DG042400
rosa_wichuraiana	Rw5G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	143
AccB1I	GGYRCC	2 cut(s)	425, 777
AccII	CGCG	3 cut(s)	390, 405, 469
AciI	CCGC	9 cut(s)	130, 196, 396, 467, 582, 608, 632, 734, 800
AclWI	GGATC	1 cut(s)	808
AcoI	YGGCCR	2 cut(s)	124, 435
AcsI	RAATTY	2 cut(s)	985, 1102
AcyI	GRCGYC	3 cut(s)	120, 426, 778
AfiI	CCNNNNNNNGG	5 cut(s)	93, 481, 604, 787, 841
AgsI	TTSAA	6 cut(s)	28, 336, 965, 985, 1067, 1101
AjnI	CCWGG	1 cut(s)	834
AluBI	AGCT	6 cut(s)	332, 352, 370, 627, 951, 1025
AluI	AGCT	6 cut(s)	332, 352, 370, 627, 951, 1025
Alw26I	GTCTC	1 cut(s)	436
AlwI	GGATC	1 cut(s)	808
Ama87I	CYCGRG	2 cut(s)	327, 341
AoxI	GGCC	6 cut(s)	96, 124, 435, 483, 783, 832
ApeKI	GCWGC	3 cut(s)	198, 496, 574
ApoI	RAATTY	2 cut(s)	985, 1102
Asp700I	GAANNNNTTC	1 cut(s)	1083
AspLEI	GCGC	8 cut(s)	390, 407, 428, 471, 688, 745, 780, 973
AspS9I	GGNCC	4 cut(s)	96, 484, 783, 832
AsuC2I	CCSGG	4 cut(s)	17, 62, 767, 782
AsuHPI	GGTGA	1 cut(s)	406
AsuII	TTCGAA	1 cut(s)	1087
AvaI	CYCGRG	2 cut(s)	327, 341
BaeGI	GKGCMC	1 cut(s)	35
BanI	GGYRCC	2 cut(s)	425, 777
BbvI	GCAGC	3 cut(s)	210, 483, 561
BccI	CCATC	5 cut(s)	110, 255, 560, 761, 889
BceAI	ACGGC	5 cut(s)	413, 422, 587, 756, 770
BciT130I	CCWGG	1 cut(s)	836
BcnI	CCSGG	4 cut(s)	17, 62, 767, 782
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	1 cut(s)	1026
BfoI	RGCGCY	4 cut(s)	429, 689, 746, 781
BfuAI	ACCTGC	1 cut(s)	143
BglI	GCCNNNNNGGC	2 cut(s)	434, 608
BisI	GCNGC	6 cut(s)	199, 467, 497, 575, 609, 735
BlpI	GCTNAGC	1 cut(s)	628
BlsI	GCNGC	6 cut(s)	200, 468, 498, 576, 610, 736
Bme1390I	CCNGG	5 cut(s)	17, 62, 767, 782, 836
BmeT110I	CYCGRG	2 cut(s)	327, 341
BmgT120I	GGNCC	4 cut(s)	96, 484, 783, 832
BmiI	GGNNCC	4 cut(s)	427, 550, 586, 779
BmrFI	CCNGG	5 cut(s)	17, 62, 767, 782, 836
Bpu1102I	GCTNAGC	1 cut(s)	628
Bpu14I	TTCGAA	1 cut(s)	1087
BpuEI	CTTGAG	2 cut(s)	428, 937
BpuMI	CCSGG	4 cut(s)	17, 62, 767, 782
BsaBI	GATNNNNATC	1 cut(s)	812
BsaHI	GRCGYC	3 cut(s)	120, 426, 778
BsaJI	CCNNGG	3 cut(s)	543, 603, 786
Bsc4I	CCNNNNNNNGG	5 cut(s)	93, 481, 604, 787, 841
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	812
BseBI	CCWGG	1 cut(s)	836
BseDI	CCNNGG	3 cut(s)	543, 603, 786
BseGI	GGATG	2 cut(s)	102, 177
BseJI	GATNNNNATC	1 cut(s)	812
BseLI	CCNNNNNNNGG	5 cut(s)	93, 481, 604, 787, 841
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	35
BseX3I	CGGCCG	1 cut(s)	435
BseXI	GCAGC	3 cut(s)	210, 483, 561
BsgI	GTGCAG	1 cut(s)	895
Bsh1236I	CGCG	3 cut(s)	390, 405, 469
Bsh1285I	CGRYCG	1 cut(s)	438
BshFI	GGCC	6 cut(s)	98, 126, 437, 485, 785, 834
BshNI	GGYRCC	2 cut(s)	425, 777
BsiEI	CGRYCG	1 cut(s)	438
BsiHKCI	CYCGRG	2 cut(s)	327, 341
BsiSI	CCGG	5 cut(s)	17, 62, 123, 767, 781
BslFI	GGGAC	1 cut(s)	719
BslI	CCNNNNNNNGG	5 cut(s)	93, 481, 604, 787, 841
BsmAI	GTCTC	1 cut(s)	436
BsmBI	CGTCTC	1 cut(s)	436
BsmFI	GGGAC	1 cut(s)	719
BsnI	GGCC	6 cut(s)	98, 126, 437, 485, 785, 834
BsoBI	CYCGRG	2 cut(s)	327, 341
Bsp119I	TTCGAA	1 cut(s)	1087
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	91, 813
Bsp1720I	GCTNAGC	1 cut(s)	628
BspACI	CCGC	9 cut(s)	130, 196, 396, 467, 582, 608, 632, 734, 800
BspANI	GGCC	6 cut(s)	98, 126, 437, 485, 785, 834
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	3 cut(s)	390, 405, 469
BspLI	GGNNCC	4 cut(s)	427, 550, 586, 779
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	1 cut(s)	808
BspT104I	TTCGAA	1 cut(s)	1087
BspT107I	GGYRCC	2 cut(s)	425, 777
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	210
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	3 cut(s)	543, 603, 786
BssMI	GATC	2 cut(s)	91, 813
BssNI	GRCGYC	3 cut(s)	120, 426, 778
Bst2UI	CCWGG	1 cut(s)	836
Bst4CI	ACNGT	1 cut(s)	571
Bst6I	CTCTTC	2 cut(s)	79, 885
BstACI	GRCGYC	3 cut(s)	120, 426, 778
BstBI	TTCGAA	1 cut(s)	1087
BstC8I	GCNNGC	4 cut(s)	113, 124, 372, 376
BstDEI	CTNAG	5 cut(s)	9, 628, 701, 870, 1118
BstDSI	CCRYGG	2 cut(s)	603, 786
BstEII	GGTNACC	1 cut(s)	1124
BstF5I	GGATG	2 cut(s)	102, 177
BstFNI	CGCG	3 cut(s)	390, 405, 469
BstH2I	RGCGCY	4 cut(s)	429, 689, 746, 781
BstHHI	GCGC	8 cut(s)	390, 407, 428, 471, 688, 745, 780, 973
BstKTI	GATC	2 cut(s)	94, 816
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	2 cut(s)	91, 813
BstMCI	CGRYCG	1 cut(s)	438
BstMWI	GCNNNNNNNGC	9 cut(s)	358, 367, 404, 434, 548, 608, 683, 694, 740
BstNI	CCWGG	1 cut(s)	836
BstPI	GGTNACC	1 cut(s)	1124
BstSCI	CCNGG	5 cut(s)	15, 60, 765, 780, 834
BstSLI	GKGCMC	1 cut(s)	35
BstUI	CGCG	3 cut(s)	390, 405, 469
BstV1I	GCAGC	3 cut(s)	210, 483, 561
BstZI	CGGCCG	1 cut(s)	435
BsuRI	GGCC	6 cut(s)	98, 126, 437, 485, 785, 834
BtgI	CCRYGG	2 cut(s)	603, 786
BtgZI	GCGATG	2 cut(s)	300, 538
BtsCI	GGATG	2 cut(s)	102, 177
BtsI	GCAGTG	2 cut(s)	289, 321
BtsIMutI	CAGTG	2 cut(s)	289, 321
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	4 cut(s)	113, 124, 372, 376
CfoI	GCGC	8 cut(s)	390, 407, 428, 471, 688, 745, 780, 973
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	4 cut(s)	96, 484, 783, 832
CseI	GACGC	1 cut(s)	128
CviAII	CATG	2 cut(s)	616, 1135
DdeI	CTNAG	5 cut(s)	9, 628, 701, 870, 1118
DinI	GGCGCC	2 cut(s)	427, 779
DpnI	GATC	2 cut(s)	93, 815
DpnII	GATC	2 cut(s)	91, 813
EaeI	YGGCCR	2 cut(s)	124, 435
EagI	CGGCCG	1 cut(s)	435
Eam1104I	CTCTTC	2 cut(s)	79, 885
EarI	CTCTTC	2 cut(s)	79, 885
EciI	GGCGGA	1 cut(s)	385
EclXI	CGGCCG	1 cut(s)	435
Eco52I	CGGCCG	1 cut(s)	435
Eco88I	CYCGRG	2 cut(s)	327, 341
Eco91I	GGTNACC	1 cut(s)	1124
EcoO109I	RGGNCCY	1 cut(s)	484
EcoO65I	GGTNACC	1 cut(s)	1124
EcoRI	GAATTC	1 cut(s)	985
EcoRII	CCWGG	1 cut(s)	834
EgeI	GGCGCC	2 cut(s)	427, 779
EheI	GGCGCC	2 cut(s)	427, 779
Esp3I	CGTCTC	1 cut(s)	436
FaeI	CATG	2 cut(s)	619, 1138
FaiI	YATR	7 cut(s)	68, 216, 617, 667, 675, 969, 1136
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	1 cut(s)	719
FatI	CATG	2 cut(s)	615, 1134
Fnu4HI	GCNGC	6 cut(s)	199, 467, 497, 575, 609, 735
FokI	GGATG	2 cut(s)	89, 164
Fsp4HI	GCNGC	6 cut(s)	199, 467, 497, 575, 609, 735
FspBI	CTAG	1 cut(s)	1026
GlaI	GCGC	8 cut(s)	389, 406, 427, 470, 687, 744, 779, 972
GluI	GCNGC	6 cut(s)	199, 467, 497, 575, 609, 735
HaeII	RGCGCY	4 cut(s)	429, 689, 746, 781
HaeIII	GGCC	6 cut(s)	98, 126, 437, 485, 785, 834
HapII	CCGG	5 cut(s)	17, 62, 123, 767, 781
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	8 cut(s)	390, 407, 428, 471, 688, 745, 780, 973
Hin1I	GRCGYC	3 cut(s)	120, 426, 778
Hin1II	CATG	2 cut(s)	619, 1138
Hin6I	GCGC	8 cut(s)	388, 405, 426, 469, 686, 743, 778, 971
HinP1I	GCGC	8 cut(s)	388, 405, 426, 469, 686, 743, 778, 971
HincII	GTYRAC	2 cut(s)	454, 621
HindII	GTYRAC	2 cut(s)	454, 621
HinfI	GANTC	9 cut(s)	7, 344, 356, 392, 419, 455, 561, 827, 1084
HpaII	CCGG	5 cut(s)	17, 62, 123, 767, 781
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	3 cut(s)	454, 621, 1007
Hpy188I	TCNGA	3 cut(s)	58, 460, 818
Hpy188III	TCNNGA	3 cut(s)	161, 719, 1019
Hpy8I	GTNNAC	3 cut(s)	454, 621, 1007
Hpy99I	CGWCG	1 cut(s)	521
HpyAV	CCTTC	5 cut(s)	167, 180, 230, 875, 1028
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4V	TGCA	3 cut(s)	577, 677, 876
HpyF10VI	GCNNNNNNNGC	9 cut(s)	358, 367, 404, 434, 548, 608, 683, 694, 740
HpyF3I	CTNAG	5 cut(s)	9, 628, 701, 870, 1118
Hsp92I	GRCGYC	3 cut(s)	120, 426, 778
Hsp92II	CATG	2 cut(s)	619, 1138
HspAI	GCGC	8 cut(s)	388, 405, 426, 469, 686, 743, 778, 971
KasI	GGCGCC	2 cut(s)	425, 777
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	91, 813
LmnI	GCTCC	2 cut(s)	548, 978
Lsp1109I	GCAGC	3 cut(s)	210, 483, 561
MaeI	CTAG	1 cut(s)	1026
MaeIII	GTNAC	3 cut(s)	80, 565, 1124
MalI	GATC	2 cut(s)	93, 815
MboI	GATC	2 cut(s)	91, 813
MboII	GAAGA	3 cut(s)	66, 736, 902
MfeI	CAATTG	1 cut(s)	657
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	7 cut(s)	149, 236, 657, 678, 819, 985, 1102
Mly113I	GGCGCC	2 cut(s)	426, 778
MlyI	GAGTC	5 cut(s)	350, 353, 386, 428, 449
MmeI	TCCRAC	2 cut(s)	81, 130
MroNI	GCCGGC	1 cut(s)	122
MroXI	GAANNNNTTC	1 cut(s)	1083
MseI	TTAA	1 cut(s)	906
MspI	CCGG	5 cut(s)	17, 62, 123, 767, 781
MspR9I	CCNGG	5 cut(s)	17, 62, 767, 782, 836
MunI	CAATTG	1 cut(s)	657
MvaI	CCWGG	1 cut(s)	836
MvnI	CGCG	3 cut(s)	390, 405, 469
MwoI	GCNNNNNNNGC	9 cut(s)	358, 367, 404, 434, 548, 608, 683, 694, 740
NaeI	GCCGGC	1 cut(s)	124
NarI	GGCGCC	2 cut(s)	426, 778
NciI	CCSGG	4 cut(s)	17, 62, 767, 782
NdeII	GATC	2 cut(s)	91, 813
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	2 cut(s)	619, 1138
NlaIV	GGNNCC	4 cut(s)	427, 550, 586, 779
NmeAIII	GCCGAG	3 cut(s)	413, 568, 623
NmuCI	GTSAC	1 cut(s)	80
NspV	TTCGAA	1 cut(s)	1087
PaeR7I	CTCGAG	1 cut(s)	341
PaqCI	CACCTGC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	2 cut(s)	360, 561
PdiI	GCCGGC	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	1083
PfeI	GAWTC	3 cut(s)	561, 827, 1084
PfoI	TCCNGGA	2 cut(s)	15, 765
PkrI	GCNGC	6 cut(s)	200, 468, 498, 576, 610, 736
PleI	GAGTC	5 cut(s)	350, 352, 386, 427, 449
PluTI	GGCGCC	2 cut(s)	429, 781
PpsI	GAGTC	5 cut(s)	350, 352, 386, 427, 449
Psp6I	CCWGG	1 cut(s)	834
PspEI	GGTNACC	1 cut(s)	1124
PspGI	CCWGG	1 cut(s)	834
PspN4I	GGNNCC	4 cut(s)	427, 550, 586, 779
PspPI	GGNCC	4 cut(s)	96, 484, 783, 832
PspXI	VCTCGAGB	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	906
SatI	GCNGC	6 cut(s)	199, 467, 497, 575, 609, 735
Sau3AI	GATC	2 cut(s)	91, 813
Sau96I	GGNCC	4 cut(s)	96, 484, 783, 832
SchI	GAGTC	5 cut(s)	350, 353, 386, 428, 449
ScrFI	CCNGG	5 cut(s)	17, 62, 767, 782, 836
SduI	GDGCHC	1 cut(s)	35
SfoI	GGCGCC	2 cut(s)	427, 779
Sfr274I	CTCGAG	1 cut(s)	341
SfuI	TTCGAA	1 cut(s)	1087
SlaI	CTCGAG	1 cut(s)	341
SmlI	CTYRAG	3 cut(s)	341, 443, 952
SmoI	CTYRAG	3 cut(s)	341, 443, 952
Sse9I	AATT	7 cut(s)	149, 236, 657, 678, 819, 985, 1102
SsiI	CCGC	9 cut(s)	130, 196, 396, 467, 582, 608, 632, 734, 800
SspDI	GGCGCC	2 cut(s)	425, 777
SspMI	CTAG	1 cut(s)	1026
StyD4I	CCNGG	5 cut(s)	15, 60, 765, 780, 834
TaaI	ACNGT	1 cut(s)	571
TaqI	TCGA	9 cut(s)	45, 342, 354, 363, 559, 718, 806, 849, 1087
TasI	AATT	7 cut(s)	149, 236, 657, 678, 819, 985, 1102
TauI	GCSGC	3 cut(s)	469, 611, 737
TfiI	GAWTC	3 cut(s)	561, 827, 1084
Tru1I	TTAA	1 cut(s)	906
Tru9I	TTAA	1 cut(s)	906
TscAI	CASTG	2 cut(s)	296, 328
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	3 cut(s)	198, 496, 574
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	1047, 1092
TspGWI	ACGGA	1 cut(s)	723
TspRI	CASTG	2 cut(s)	296, 328
XapI	RAATTY	2 cut(s)	985, 1102
XhoI	CTCGAG	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	1083
XspI	CTAG	1 cut(s)	1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.