Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013872

Physical Location & Seq

Genomic Coordinates Reverse (-)

3177811 .. 3179640

Gene Structure 1830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1830 bp

ATGGCTACTGCTTCGAATAGTTGGGCTCACACAGCCCAAATACCTCACCACCTCTCCACCACCTCCTCCACATCTTCTTCTTCTTCACTACTAAACATGAGCTTCACCAAAAGATCCGTCGCCTTGAACAGAAATAGAACCGTCACTGCTCACTCGGCTCTCCAGTCTCCTTCAGTTCTTAACTTCCCAAAACAGCCATACCATCAGCAAGTTATTACAAAAGAGGCCACTTCATCACCCTCCGCAAAGCCTAAAACCGCAACTACAACACAGCAACCTCCACACTGGAACTTCCTCCAGAGAGCTGCCTCCACCGCCTTGGACATGTTGGAGGGGGCTTTGGTCTCGCGTGAGAGCCGAAGCCCTCTCCCCAAAACCGCCGACCCACGTGTCCAAATCGCCGGGAACTTTGCTCCCGTTCCGGAGCAACCTGTCCGTCATTCACTCCCTGTTTCCGGTACCATACCCGAATGCATTAGCGGCGTCTACGTCCGTAACGGCGCCAACCCTTTACACGAGCCGGTCGCGGGGCACCACTTCTTCGACGGTGACGGCATGGTTCACGCCGTTAGCATCAATGACGGTGCCGCCAGCTACGCATGTCGGTTCACTGAAACCCAAAGGCTGGTCCAGGAGCGTGAAATCGGGAGACCCGTTTTCCCAAAAGCCATAGGCGAGCTCCACGGCCACTCCGGAATCGCACGTCTCGCCTTGTTTTACGCTCGCGGCGCTTTGGGCCTTGTGGACCCCAGCCACGGCATCGGAGTCGCCAACGCCGGCTTAGTCTACTTCAACGACCGCCTCTTAGCCATGTCCGAGGACGACATGCCGTACCAAGTCCGAATCAAACCCTCCGGCGACCTCGAAACAGTCGGCCGCTACGACTTCGAGACCCAACTCGGGTCCACAATGATCGCCCACCCGAAAGTCGACCCGGTATCCAGTCACCTCCACACTCTCAGCTACGACGTCGTGAAAAAGCCTTACCTGAAATACTTTCAATTCTCCGCCGACGGGGAGAAGTCTCCGGACGTGGAGATCCCTCTGGCGGCCCCCACAATGATGCACGACTTCGCCATCACAGAAAACTTCGTCGTGATTCCCGACCAGCAGGTGGTGTTCAAGCTGCAGGAGATGATCACCGGCGGGTCGCCGGTCATCTATGATCAGAATAAGAAGTCGAGGTTTGGAATACTTGCCAAAAATGCCACTAACGCTGCTGACATAATCTGGGTTGAGTCGCCGGACACCTTTTGCTTCCACTTGTGGAATGCGTGGGAGGAGCCGGAGTCCGACGAGGTTGTTGTGATCGGATCATGCATGACTCCAGCGGACTCGATATTTAACGAGTGTGATGAGAGCTTGAAGAGTGTGTTGTCCGAAATCCGGCTCAACTTGAAAACCGGCGAGTCGAAGCGGAGGCCAATTATTTCCGAGGAGGCGGATCATGTGAACTTGGAGGCGGGAATGGTGAACCGGAACCTGCTCGGTAGAAAGACTCGGTATGCTTATCTCGCCATTGCTGAACCGTGGCCCAAAGTTTCTGGTTTCGCCAAGGTAGATCTTTTTACTGGTGAAGTAAAAAAACATATTTACGGGGACAGGAAGTTCGGTGGCGAGCCTTTCTTCCTTCCTTCGAGTTCAACTGGGGAAGAAGATGAAGGTTATATTCTGAGCTTTGTTCACGACGAGAAGACGTGGAAGTCAGAGCTTCAGATTGTGAACGCCGTGAGTTTGAAGGTGGAAGCCACTGTGACGTTACCGTCAAGAGTTCCGTATGGATTTCACGGCACGTTCATAGACTCCAAGGCCTTGAAAAACCAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009687 GO:0009688 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010431 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

610

Amino Acids

66.97

Weight (kDa)

6.23

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	137 - 601	1.7e-128	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30100 AT4G18350
fragaria_vesca	FvH4_3g05440
malus_domestica	MD05G1282700.v1.1 MD10G1261000.v1.1
prunus_persica	Prupe.4G082000_v2.0.a1
pyrus_communis	pycom05g26210
rosa_chinensis	RchiOBHm_Chr5g0014331
rosa_laevigata	RLG00000032098
rosa_multiflora	Rmu_co8232887.1_g000001 Rmu_sc0009295.1_g000002
rosa_rugosa	Rorug05G0017400
rosa_samantha	Rh5AG111500 Rh5BG108800 Rh5CG120500 Rh5DG107500
rosa_wichuraiana	Rw5G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1102
AasI	GACNNNNNNGTC	3 cut(s)	389, 1702, 1762
AatII	GACGTC	1 cut(s)	972
Acc36I	ACCTGC	2 cut(s)	1102, 1491
Acc65I	GGTACC	1 cut(s)	458
AccB1I	GGYRCC	4 cut(s)	458, 500, 531, 584
AccB7I	CCANNNNNTGG	2 cut(s)	625, 1114
AccI	GTMKAC	3 cut(s)	486, 786, 930
AccII	CGCG	3 cut(s)	349, 527, 726
AccIII	TCCGGA	3 cut(s)	421, 692, 1027
AclWI	GGATC	4 cut(s)	108, 1033, 1321, 1452
AcoI	YGGCCR	2 cut(s)	685, 874
AcuI	CTGAAG	2 cut(s)	156, 1697
AcvI	CACGTG	1 cut(s)	389
AcyI	GRCGYC	3 cut(s)	483, 501, 969
AfaI	GTAC	2 cut(s)	460, 833
AfiI	CCNNNNNNNGG	9 cut(s)	455, 527, 625, 755, 900, 1014, 1048, 1114, 1386
AflIII	ACRYGT	2 cut(s)	324, 388
AgsI	TTSAA	9 cut(s)	127, 793, 1001, 1123, 1366, 1399, 1644, 1738, 1816
AjiI	CACGTC	3 cut(s)	704, 1033, 1698
AjnI	CCWGG	2 cut(s)	630, 1821
AloI	GAACNNNNNNTCC	2 cut(s)	1592, 1624
AluBI	AGCT	9 cut(s)	102, 305, 594, 679, 963, 1126, 1362, 1677, 1711
AluI	AGCT	9 cut(s)	102, 305, 594, 679, 963, 1126, 1362, 1677, 1711
Alw21I	GWGCWC	1 cut(s)	681
Alw26I	GTCTC	6 cut(s)	171, 349, 643, 710, 884, 1029
AlwI	GGATC	4 cut(s)	108, 1033, 1321, 1452
Ama87I	CYCGRG	1 cut(s)	899
Aor13HI	TCCGGA	3 cut(s)	421, 692, 1027
AoxI	GGCC	8 cut(s)	225, 685, 736, 874, 1050, 1421, 1532, 1809
ApeKI	GCWGC	3 cut(s)	305, 1126, 1217
ArsI	GACNNNNNNTTYG	4 cut(s)	102, 134, 1592, 1624
Asp718I	GGTACC	1 cut(s)	458
AspLEI	GCGC	2 cut(s)	503, 731
AspS9I	GGNCC	6 cut(s)	628, 736, 745, 903, 1051, 1533
AsuC2I	CCSGG	2 cut(s)	403, 935
AsuHPI	GGTGA	8 cut(s)	38, 97, 228, 560, 938, 1132, 1483, 1586
AsuII	TTCGAA	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	899
AvaII	GGWCC	3 cut(s)	628, 745, 903
BaeGI	GKGCMC	1 cut(s)	534
BanI	GGYRCC	4 cut(s)	458, 500, 531, 584
BanII	GRGCYC	2 cut(s)	28, 681
BauI	CACGAG	1 cut(s)	515
BbrPI	CACGTG	1 cut(s)	389
BbsI	GAAGAC	1 cut(s)	1700
Bbv12I	GWGCWC	1 cut(s)	681
BbvI	GCAGC	3 cut(s)	292, 1113, 1204
BccI	CCATC	2 cut(s)	210, 1085
BceAI	ACGGC	8 cut(s)	514, 551, 568, 700, 772, 814, 1712, 1804
BcgI	CGANNNNNNTGC	2 cut(s)	748, 782
BciT130I	CCWGG	2 cut(s)	632, 1823
BciVI	GTATCC	1 cut(s)	949
BclI	TGATCA	2 cut(s)	1137, 1165
BcnI	CCSGG	2 cut(s)	403, 935
BcoDI	GTCTC	6 cut(s)	171, 349, 643, 710, 884, 1029
BfmI	CTRYAG	1 cut(s)	1127
BfoI	RGCGCY	2 cut(s)	504, 732
BfuAI	ACCTGC	2 cut(s)	1102, 1491
BfuI	GTATCC	1 cut(s)	949
BglII	AGATCT	1 cut(s)	1561
BisI	GCNGC	8 cut(s)	306, 481, 588, 727, 877, 1050, 1127, 1218
BlsI	GCNGC	8 cut(s)	307, 482, 589, 728, 878, 1051, 1128, 1219
Bme1390I	CCNGG	4 cut(s)	403, 632, 935, 1823
Bme18I	GGWCC	3 cut(s)	628, 745, 903
BmeT110I	CYCGRG	1 cut(s)	899
BmgBI	CACGTC	3 cut(s)	704, 1033, 1698
BmgT120I	GGNCC	6 cut(s)	628, 736, 745, 903, 1051, 1533
BmiI	GGNNCC	9 cut(s)	460, 502, 533, 586, 747, 904, 1053, 1284, 1481
BmrFI	CCNGG	4 cut(s)	403, 632, 935, 1823
BmrI	ACTGGG	1 cut(s)	1656
BmsI	GCATC	3 cut(s)	582, 768, 1053
BmuI	ACTGGG	1 cut(s)	1656
BpiI	GAAGAC	1 cut(s)	1700
BpmI	CTGGAG	3 cut(s)	146, 281, 1311
Bpu14I	TTCGAA	1 cut(s)	14
BpuMI	CCSGG	2 cut(s)	403, 935
BsaAI	YACGTR	1 cut(s)	389
BsaHI	GRCGYC	3 cut(s)	483, 501, 969
BsaI	GGTCTC	3 cut(s)	349, 643, 884
BsaJI	CCNNGG	8 cut(s)	318, 682, 754, 816, 1434, 1529, 1554, 1806
BsaWI	WCCGGW	5 cut(s)	421, 455, 692, 1027, 1476
BsaXI	ACNNNNNCTCC	6 cut(s)	38, 68, 674, 704, 1274, 1304
Bsc4I	CCNNNNNNNGG	9 cut(s)	455, 527, 625, 755, 900, 1014, 1048, 1114, 1386
Bse118I	RCCGGY	5 cut(s)	520, 776, 1142, 1153, 1403
Bse1I	ACTGG	5 cut(s)	163, 290, 942, 1576, 1651
Bse3DI	GCAATG	1 cut(s)	1518
BseAI	TCCGGA	3 cut(s)	421, 692, 1027
BseBI	CCWGG	2 cut(s)	632, 1823
BseDI	CCNNGG	8 cut(s)	318, 682, 754, 816, 1434, 1529, 1554, 1806
BseLI	CCNNNNNNNGG	9 cut(s)	455, 527, 625, 755, 900, 1014, 1048, 1114, 1386
BseMI	GCAATG	1 cut(s)	1518
BseMII	CTCAG	2 cut(s)	973, 1664
BseNI	ACTGG	5 cut(s)	163, 290, 942, 1576, 1651
BseRI	GAGGAG	3 cut(s)	55, 1295, 1451
BseSI	GKGCMC	1 cut(s)	534
BseX3I	CGGCCG	1 cut(s)	874
BseXI	GCAGC	3 cut(s)	292, 1113, 1204
BseYI	CCCAGC	1 cut(s)	749
Bsh1236I	CGCG	3 cut(s)	349, 527, 726
Bsh1285I	CGRYCG	3 cut(s)	525, 799, 877
BshFI	GGCC	8 cut(s)	227, 687, 738, 876, 1052, 1423, 1534, 1811
BshNI	GGYRCC	4 cut(s)	458, 500, 531, 584
BsiEI	CGRYCG	3 cut(s)	525, 799, 877
BsiHKAI	GWGCWC	1 cut(s)	681
BsiHKCI	CYCGRG	1 cut(s)	899
BslFI	GGGAC	1 cut(s)	1613
BslI	CCNNNNNNNGG	9 cut(s)	455, 527, 625, 755, 900, 1014, 1048, 1114, 1386
BsmAI	GTCTC	6 cut(s)	171, 349, 643, 710, 884, 1029
BsmBI	CGTCTC	1 cut(s)	710
BsmFI	GGGAC	1 cut(s)	1613
BsmI	GAATGC	2 cut(s)	476, 1276
BsnI	GGCC	8 cut(s)	227, 687, 738, 876, 1052, 1423, 1534, 1811
Bso31I	GGTCTC	3 cut(s)	349, 643, 884
BsoBI	CYCGRG	1 cut(s)	899
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	3 cut(s)	28, 534, 681
Bsp13I	TCCGGA	3 cut(s)	421, 692, 1027
Bsp143I	GATC	9 cut(s)	113, 912, 1038, 1137, 1165, 1308, 1313, 1444, 1561
BspANI	GGCC	8 cut(s)	227, 687, 738, 876, 1052, 1423, 1534, 1811
BspCNI	CTCAG	2 cut(s)	972, 1665
BspEI	TCCGGA	3 cut(s)	421, 692, 1027
BspFNI	CGCG	3 cut(s)	349, 527, 726
BspLI	GGNNCC	9 cut(s)	460, 502, 533, 586, 747, 904, 1053, 1284, 1481
BspMAI	CTGCAG	1 cut(s)	1131
BspMI	ACCTGC	2 cut(s)	1102, 1491
BspPI	GGATC	4 cut(s)	108, 1033, 1321, 1452
BspT104I	TTCGAA	1 cut(s)	14
BspT107I	GGYRCC	4 cut(s)	458, 500, 531, 584
BspTNI	GGTCTC	3 cut(s)	349, 643, 884
BsrDI	GCAATG	1 cut(s)	1518
BsrFI	RCCGGY	5 cut(s)	520, 776, 1142, 1153, 1403
BsrI	ACTGG	5 cut(s)	163, 290, 942, 1576, 1651
BssAI	RCCGGY	5 cut(s)	520, 776, 1142, 1153, 1403
BssECI	CCNNGG	8 cut(s)	318, 682, 754, 816, 1434, 1529, 1554, 1806
BssMI	GATC	9 cut(s)	113, 912, 1038, 1137, 1165, 1308, 1313, 1444, 1561
BssNI	GRCGYC	3 cut(s)	483, 501, 969
BssSI	CACGAG	1 cut(s)	515
BssT1I	CCWWGG	3 cut(s)	318, 1554, 1806
Bst2BI	CACGAG	1 cut(s)	515
Bst2UI	CCWGG	2 cut(s)	632, 1823
Bst4CI	ACNGT	7 cut(s)	142, 548, 584, 871, 1530, 1753, 1764
Bst6I	CTCTTC	1 cut(s)	1361
BstACI	GRCGYC	3 cut(s)	483, 501, 969
BstBAI	YACGTR	1 cut(s)	389
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	5 cut(s)	592, 677, 724, 778, 1619
BstDEI	CTNAG	4 cut(s)	781, 805, 959, 1673
BstDSI	CCRYGG	3 cut(s)	682, 754, 1529
BstFNI	CGCG	3 cut(s)	349, 527, 726
BstH2I	RGCGCY	2 cut(s)	504, 732
BstHHI	GCGC	2 cut(s)	503, 731
BstKTI	GATC	9 cut(s)	116, 915, 1041, 1140, 1168, 1311, 1316, 1447, 1564
BstMAI	GTCTC	6 cut(s)	171, 349, 643, 710, 884, 1029
BstMBI	GATC	9 cut(s)	113, 912, 1038, 1137, 1165, 1308, 1313, 1444, 1561
BstMCI	CGRYCG	3 cut(s)	525, 799, 877
BstNI	CCWGG	2 cut(s)	632, 1823
BstNSI	RCATGY	3 cut(s)	328, 603, 829
BstSCI	CCNGG	4 cut(s)	401, 630, 933, 1821
BstSFI	CTRYAG	1 cut(s)	1127
BstSLI	GKGCMC	1 cut(s)	534
BstUI	CGCG	3 cut(s)	349, 527, 726
BstV1I	GCAGC	3 cut(s)	292, 1113, 1204
BstV2I	GAAGAC	1 cut(s)	1700
BstX2I	RGATCY	3 cut(s)	113, 1038, 1561
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	3 cut(s)	113, 1038, 1561
BstZI	CGGCCG	1 cut(s)	874
BsuI	GTATCC	1 cut(s)	949
BsuRI	GGCC	8 cut(s)	227, 687, 738, 876, 1052, 1423, 1534, 1811
BtgI	CCRYGG	3 cut(s)	682, 754, 1529
BtrI	CACGTC	3 cut(s)	704, 1033, 1698
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	4 cut(s)	144, 283, 609, 1749
BveI	ACCTGC	2 cut(s)	1102, 1491
Cac8I	GCNNGC	5 cut(s)	592, 677, 724, 778, 1619
CfoI	GCGC	2 cut(s)	503, 731
Cfr10I	RCCGGY	5 cut(s)	520, 776, 1142, 1153, 1403
Cfr13I	GGNCC	6 cut(s)	628, 736, 745, 903, 1051, 1533
CseI	GACGC	1 cut(s)	472
Csp6I	GTAC	2 cut(s)	459, 832
CviAII	CATG	9 cut(s)	97, 325, 556, 600, 811, 826, 1317, 1321, 1448
CviQI	GTAC	2 cut(s)	459, 832
DdeI	CTNAG	4 cut(s)	781, 805, 959, 1673
DinI	GGCGCC	1 cut(s)	502
DpnI	GATC	9 cut(s)	115, 914, 1040, 1139, 1167, 1310, 1315, 1446, 1563
DpnII	GATC	9 cut(s)	113, 912, 1038, 1137, 1165, 1308, 1313, 1444, 1561
DrdI	GACNNNNNNGTC	3 cut(s)	389, 1702, 1762
DseDI	GACNNNNNNGTC	3 cut(s)	389, 1702, 1762
EaeI	YGGCCR	2 cut(s)	685, 874
EagI	CGGCCG	1 cut(s)	874
Eam1104I	CTCTTC	1 cut(s)	1361
EarI	CTCTTC	1 cut(s)	1361
EciI	GGCGGA	2 cut(s)	997, 1457
Ecl136II	GAGCTC	1 cut(s)	679
EclXI	CGGCCG	1 cut(s)	874
Eco130I	CCWWGG	3 cut(s)	318, 1554, 1806
Eco147I	AGGCCT	1 cut(s)	1811
Eco24I	GRGCYC	2 cut(s)	28, 681
Eco31I	GGTCTC	3 cut(s)	349, 643, 884
Eco47I	GGWCC	3 cut(s)	628, 745, 903
Eco52I	CGGCCG	1 cut(s)	874
Eco53kI	GAGCTC	1 cut(s)	679
Eco57I	CTGAAG	2 cut(s)	156, 1697
Eco72I	CACGTG	1 cut(s)	389
Eco88I	CYCGRG	1 cut(s)	899
EcoICRI	GAGCTC	1 cut(s)	679
EcoRII	CCWGG	2 cut(s)	630, 1821
EcoT14I	CCWWGG	3 cut(s)	318, 1554, 1806
EcoT22I	ATGCAT	2 cut(s)	476, 1322
EcoT38I	GRGCYC	2 cut(s)	28, 681
EgeI	GGCGCC	1 cut(s)	502
EheI	GGCGCC	1 cut(s)	502
ErhI	CCWWGG	3 cut(s)	318, 1554, 1806
Esp3I	CGTCTC	1 cut(s)	710
FaeI	CATG	9 cut(s)	100, 328, 559, 603, 814, 829, 1320, 1324, 1451
FaqI	GGGAC	1 cut(s)	1613
FatI	CATG	9 cut(s)	96, 324, 555, 599, 810, 825, 1316, 1320, 1447
FauI	CCCGC	3 cut(s)	520, 1139, 1456
FbaI	TGATCA	2 cut(s)	1137, 1165
FblI	GTMKAC	3 cut(s)	486, 786, 930
Fnu4HI	GCNGC	8 cut(s)	306, 481, 588, 727, 877, 1050, 1127, 1218
FriOI	GRGCYC	2 cut(s)	28, 681
Fsp4HI	GCNGC	8 cut(s)	306, 481, 588, 727, 877, 1050, 1127, 1218
GlaI	GCGC	2 cut(s)	502, 730
GluI	GCNGC	8 cut(s)	306, 481, 588, 727, 877, 1050, 1127, 1218
GsaI	CCCAGC	1 cut(s)	753
GsuI	CTGGAG	3 cut(s)	146, 281, 1311
HaeII	RGCGCY	2 cut(s)	504, 732
HaeIII	GGCC	8 cut(s)	227, 687, 738, 876, 1052, 1423, 1534, 1811
HgaI	GACGC	1 cut(s)	472
HhaI	GCGC	2 cut(s)	503, 731
Hin1I	GRCGYC	3 cut(s)	483, 501, 969
Hin1II	CATG	9 cut(s)	100, 328, 559, 603, 814, 829, 1320, 1324, 1451
Hin6I	GCGC	2 cut(s)	501, 729
HinP1I	GCGC	2 cut(s)	501, 729
HincII	GTYRAC	1 cut(s)	931
HindII	GTYRAC	1 cut(s)	931
HphI	GGTGA	8 cut(s)	38, 97, 228, 560, 938, 1132, 1483, 1586
Hpy99I	CGWCG	8 cut(s)	122, 548, 971, 974, 1016, 1097, 1298, 1691
HpyAV	CCTTC	5 cut(s)	180, 1640, 1644, 1655, 1732
HpyCH4III	ACNGT	7 cut(s)	142, 548, 584, 871, 1530, 1753, 1764
HpyCH4IV	ACGT	8 cut(s)	388, 489, 703, 969, 1032, 1697, 1757, 1793
HpyCH4V	TGCA	4 cut(s)	474, 1066, 1129, 1320
HpyF3I	CTNAG	4 cut(s)	781, 805, 959, 1673
HpySE526I	ACGT	8 cut(s)	388, 489, 703, 969, 1032, 1697, 1757, 1793
Hsp92I	GRCGYC	3 cut(s)	483, 501, 969
Hsp92II	CATG	9 cut(s)	100, 328, 559, 603, 814, 829, 1320, 1324, 1451
HspAI	GCGC	2 cut(s)	501, 729
KasI	GGCGCC	1 cut(s)	500
Kpn2I	TCCGGA	3 cut(s)	421, 692, 1027
KpnI	GGTACC	1 cut(s)	462
KroI	GCCGGC	1 cut(s)	776
KroNI	GCCGGC	1 cut(s)	778
Ksp22I	TGATCA	2 cut(s)	1137, 1165
Kzo9I	GATC	9 cut(s)	113, 912, 1038, 1137, 1165, 1308, 1313, 1444, 1561
LmnI	GCTCC	5 cut(s)	418, 424, 634, 684, 1282
Lsp1109I	GCAGC	3 cut(s)	292, 1113, 1204
LweI	GCATC	3 cut(s)	582, 768, 1053
MaeII	ACGT	8 cut(s)	388, 489, 703, 969, 1032, 1697, 1757, 1793
MaeIII	GTNAC	6 cut(s)	142, 494, 548, 944, 1753, 1758
MalI	GATC	9 cut(s)	115, 914, 1040, 1139, 1167, 1310, 1315, 1446, 1563
MboI	GATC	9 cut(s)	113, 912, 1038, 1137, 1165, 1308, 1313, 1444, 1561
MflI	RGATCY	3 cut(s)	113, 1038, 1561
MhlI	GDGCHC	3 cut(s)	28, 534, 681
MluCI	AATT	2 cut(s)	1001, 1425
Mly113I	GGCGCC	1 cut(s)	501
MlyI	GAGTC	8 cut(s)	774, 1247, 1298, 1318, 1328, 1418, 1492, 1796
MmeI	TCCRAC	2 cut(s)	309, 1317
Mph1103I	ATGCAT	2 cut(s)	476, 1322
MroI	TCCGGA	3 cut(s)	421, 692, 1027
MroNI	GCCGGC	1 cut(s)	776
MseI	TTAA	2 cut(s)	180, 1344
MslI	CAYNNNNRTG	1 cut(s)	1061
MspA1I	CMGCKG	1 cut(s)	1331
MspR9I	CCNGG	4 cut(s)	403, 632, 935, 1823
Mva1269I	GAATGC	2 cut(s)	476, 1276
MvaI	CCWGG	2 cut(s)	632, 1823
MvnI	CGCG	3 cut(s)	349, 527, 726
NaeI	GCCGGC	1 cut(s)	778
NarI	GGCGCC	1 cut(s)	501
NciI	CCSGG	2 cut(s)	403, 935
NdeII	GATC	9 cut(s)	113, 912, 1038, 1137, 1165, 1308, 1313, 1444, 1561
NgoMIV	GCCGGC	1 cut(s)	776
NlaIII	CATG	9 cut(s)	100, 328, 559, 603, 814, 829, 1320, 1324, 1451
NlaIV	GGNNCC	9 cut(s)	460, 502, 533, 586, 747, 904, 1053, 1284, 1481
NmeAIII	GCCGAG	1 cut(s)	134
NmuCI	GTSAC	4 cut(s)	142, 548, 944, 1753
NsiI	ATGCAT	2 cut(s)	476, 1322
NspI	RCATGY	3 cut(s)	328, 603, 829
NspV	TTCGAA	1 cut(s)	14
PaqCI	CACCTGC	1 cut(s)	1102
PceI	AGGCCT	1 cut(s)	1811
PciI	ACATGT	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	3 cut(s)	651, 879, 1101
PctI	GAATGC	2 cut(s)	476, 1276
PdiI	GCCGGC	1 cut(s)	778
PfeI	GAWTC	3 cut(s)	696, 843, 1099
PflMI	CCANNNNNTGG	2 cut(s)	625, 1114
PfoI	TCCNGGA	1 cut(s)	630
PkrI	GCNGC	8 cut(s)	307, 482, 589, 728, 878, 1051, 1128, 1219
PleI	GAGTC	8 cut(s)	773, 1246, 1297, 1318, 1328, 1417, 1492, 1796
PluTI	GGCGCC	1 cut(s)	504
PmaCI	CACGTG	1 cut(s)	389
PmlI	CACGTG	1 cut(s)	389
PpsI	GAGTC	8 cut(s)	773, 1246, 1297, 1318, 1328, 1417, 1492, 1796
Ppu21I	YACGTR	1 cut(s)	389
PscI	ACATGT	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	681
Psp6I	CCWGG	2 cut(s)	630, 1821
PspCI	CACGTG	1 cut(s)	389
PspFI	CCCAGC	1 cut(s)	749
PspGI	CCWGG	2 cut(s)	630, 1821
PspN4I	GGNNCC	9 cut(s)	460, 502, 533, 586, 747, 904, 1053, 1284, 1481
PspPI	GGNCC	6 cut(s)	628, 736, 745, 903, 1051, 1533
PstI	CTGCAG	1 cut(s)	1131
PsuI	RGATCY	3 cut(s)	113, 1038, 1561
RsaI	GTAC	2 cut(s)	460, 833
RsaNI	GTAC	2 cut(s)	459, 832
RseI	CAYNNNNRTG	1 cut(s)	1061
SacI	GAGCTC	1 cut(s)	681
SalI	GTCGAC	1 cut(s)	929
SaqAI	TTAA	2 cut(s)	180, 1344
SatI	GCNGC	8 cut(s)	306, 481, 588, 727, 877, 1050, 1127, 1218
Sau3AI	GATC	9 cut(s)	113, 912, 1038, 1137, 1165, 1308, 1313, 1444, 1561
Sau96I	GGNCC	6 cut(s)	628, 736, 745, 903, 1051, 1533
SchI	GAGTC	8 cut(s)	774, 1247, 1298, 1318, 1328, 1418, 1492, 1796
ScrFI	CCNGG	4 cut(s)	403, 632, 935, 1823
SduI	GDGCHC	3 cut(s)	28, 534, 681
SfaNI	GCATC	3 cut(s)	582, 768, 1053
SfcI	CTRYAG	1 cut(s)	1127
SfoI	GGCGCC	1 cut(s)	502
SfuI	TTCGAA	1 cut(s)	14
SgrAI	CRCCGGYG	1 cut(s)	1142
SinI	GGWCC	3 cut(s)	628, 745, 903
SmiMI	CAYNNNNRTG	1 cut(s)	1061
Sse9I	AATT	2 cut(s)	1001, 1425
SseBI	AGGCCT	1 cut(s)	1811
SspDI	GGCGCC	1 cut(s)	500
SstI	GAGCTC	1 cut(s)	681
StuI	AGGCCT	1 cut(s)	1811
StyD4I	CCNGG	4 cut(s)	401, 630, 933, 1821
StyI	CCWWGG	3 cut(s)	318, 1554, 1806
TaaI	ACNGT	7 cut(s)	142, 548, 584, 871, 1530, 1753, 1764
TaiI	ACGT	8 cut(s)	391, 492, 706, 972, 1035, 1700, 1760, 1796
TaqI	TCGA	9 cut(s)	14, 543, 864, 888, 930, 1181, 1337, 1412, 1637
TasI	AATT	2 cut(s)	1001, 1425
TauI	GCSGC	5 cut(s)	483, 590, 729, 879, 1052
TfiI	GAWTC	3 cut(s)	696, 843, 1099
Tru1I	TTAA	2 cut(s)	180, 1344
Tru9I	TTAA	2 cut(s)	180, 1344
TscAI	CASTG	4 cut(s)	151, 290, 616, 1756
TseFI	GTSAC	4 cut(s)	142, 548, 944, 1753
TseI	GCWGC	3 cut(s)	305, 1126, 1217
Tsp45I	GTSAC	4 cut(s)	142, 548, 944, 1753
TspDTI	ATGAA	3 cut(s)	222, 1674, 1786
TspGWI	ACGGA	4 cut(s)	106, 425, 482, 1764
TspRI	CASTG	4 cut(s)	151, 290, 616, 1756
Van91I	CCANNNNNTGG	2 cut(s)	625, 1114
VpaK11BI	GGWCC	3 cut(s)	628, 745, 903
XceI	RCATGY	3 cut(s)	328, 603, 829
XmiI	GTMKAC	3 cut(s)	486, 786, 930
ZraI	GACGTC	1 cut(s)	970
Zsp2I	ATGCAT	2 cut(s)	476, 1322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.