Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0013872

Physical Location & Seq

Genomic Coordinates Forward (+)

10910779 .. 10912593

Gene Structure 1815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032098

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1815 bp

ATGGCTACTCCTAATTCGAATAGTTGGGCTCACACAGCCCAAATACCACACCACCTTTCTACCTCCTCCTCTGTTTCTTCACTAGTAAACATGGGCTTCCCGACAAGATCCATCGCCTTGAACAGAAATAGAACCAGCATCATTCACTCAGCTCTCCAGTCTCCTTCAGTTCTTCACTTCCCAAAACAGCCCTACCATCCGCAAGTTATTACCAAAGAGACCACTTCTCCAAAGCGTAAAACGGTAACTACAACGCAGCAACCTCCACACTGGAATTTGCTTCAGAGAGCTGCCTCCACCGCCTTGGACATGTTGGAAGGTGCTTTGGTCTCGCGTGAGAGCCAAAACCCTCTCCCCAAAACCGCCGACCCACGTGTCCAAATCGCCGGGAACTTCGCTCCTGTGCCGGAGCAACCCGTCCGACACTCACTGCCCGTATCCGGGACCATACCCGAATGCATTAGCGGCGTCTACGTCCGTAACGGCGCGAACCCCTTACACGAGCCGGTCGCCGGCCACCACTTCTTCGACGGTGACGGCATGGTCCACGCCGTCAGCATAAATGACGGAGCCGCCAGCTACGCATGTCGGTTCACTGAAACCCAAAGACTGGTCCAGGAGCGGGAAATCGGGCGACCCGTTTTCCCAAAAGCCATAGGCGAGCTCCACGGCCACTCCGGCATCGCCCGCCTAGCCTTGTTTTACGCGCGCGGAGCTTTGGGCCTCGTGGACCCCAGCCACGGCATCGGAGTCGCCAACGCCGGCTTAGTCTATTTCAACGACCGCCTCTTGGCCATGTCCGAGGACGACATGCCGTACCAAGTGCGGATCACTCCCTCCGGCGACCTCGAAACAGTCGGCCGCTACGACTTCGAAACCCAACTCGGGTCCACAATGATCGCCCACCCTAAAGTCGACCCGGTGTCCGGCCACCTCCACACGCTCAGCTACGACGTAGTGAAGAGGCCTTACCTGAAATACTTCCAATTCTCCGCCGACGGGGAGAAGTCTCCGGACGTGGAAATCCCTCTGGCGGCGCCCACAATGATGCACGACTTCGCCATCACCGAAAACTTCGTGGTGATTCCCGACCAGCAGGTGGTGTTCAAGCTGCAGGAGATGATCACGGGCGGGTCGCCGGTGATCTACGACAAGAACAAGAAATCAAGGTTCGGAATTCTGGCGAAAAATGCCACAAACGCTGATGATATAATTTGGGTTGAATGCCCGGACACTTTCTGCTTCCACTTGTGGAATGCGTGGGAGGAGCCTGAGTCCGATGAGGTGGTTGTGATCGGGTCATGCATGACTCCACCGGACTCGATATTTAATGAGAATGACGAGTGCTTGAAGAGTGTGTTGTCCGAAATCCGGCTCAATATGAAAACCGGCGAGTCGACTCGGAGGCCGATTATTTCGGAGGATTCGGAGCATGTGAACTTGGAGGCGGGAATGGTGAATCGGAACCGGCTCGGGAGAAAGACACGGTATGCTTATCTCGCCATTGCTGAACCGTGGCCAAAAGTTTCTGGTTTCGCCAAGGTGGATCTTTTTACTGGCCAAGTAAAAAAGCATATTTACGGAGACAGGAAGTTTGGTGGTGAGCCCTTCTTTCTTCCTTCGGGTTCATGTGGGGAAGAAGATAGTGGGTATATTCTGAGCTTTGTTCACGACGAGAAGACGTGGAAGTCGGAGCTTCAGATTGTGAATGCCATGAATTTGAAGCTGGAAGCCACTGTGACGCTACCGTCAAGAGTTCCATATGGATTTCACGGCACGTTCATAGACTCGAAGGACTTGAAAAACCAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009687 GO:0009688 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010431 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

605

Amino Acids

66.82

Weight (kDa)

6.18

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	132 - 596	1.9e-128	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30100 AT4G18350
fragaria_vesca	FvH4_3g05440
malus_domestica	MD05G1282700.v1.1 MD10G1261000.v1.1
prunus_persica	Prupe.4G082000_v2.0.a1
pyrus_communis	pycom05g26210
rosa_chinensis	RchiOBHm_Chr5g0014331
rosa_laevigata	RLG00000032098
rosa_multiflora	Rmu_co8232887.1_g000001 Rmu_sc0009295.1_g000002
rosa_rugosa	Rorug05G0017400
rosa_samantha	Rh5AG111500 Rh5BG108800 Rh5CG120500 Rh5DG107500
rosa_wichuraiana	Rw5G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1087
AasI	GACNNNNNNGTC	4 cut(s)	374, 542, 1687, 1747
Acc36I	ACCTGC	1 cut(s)	1087
AccB1I	GGYRCC	1 cut(s)	1036
AccB7I	CCANNNNNTGG	2 cut(s)	610, 1099
AccBSI	CCGCTC	1 cut(s)	622
AccI	GTMKAC	3 cut(s)	471, 915, 1397
AccII	CGCG	5 cut(s)	334, 488, 707, 709, 711
AccIII	TCCGGA	1 cut(s)	1012
AclWI	GGATC	3 cut(s)	102, 836, 1554
AcoI	YGGCCR	7 cut(s)	514, 670, 792, 859, 928, 1517, 1558
AcsI	RAATTY	3 cut(s)	274, 1176, 1717
AcuI	CTGAAG	3 cut(s)	150, 266, 1682
AcvI	CACGTG	1 cut(s)	374
AcyI	GRCGYC	2 cut(s)	468, 1037
AfaI	GTAC	1 cut(s)	818
AflIII	ACRYGT	2 cut(s)	309, 373
AgsI	TTSAA	7 cut(s)	121, 778, 1108, 1223, 1351, 1723, 1801
AhdI	GACNNNNNGTC	1 cut(s)	922
AhlI	ACTAGT	1 cut(s)	82
AjiI	CACGTC	2 cut(s)	1018, 1683
AjnI	CCWGG	2 cut(s)	615, 1806
Alw21I	GWGCWC	1 cut(s)	666
Alw26I	GTCTC	5 cut(s)	165, 212, 334, 1014, 1578
AlwI	GGATC	3 cut(s)	102, 836, 1554
Ama87I	CYCGRG	2 cut(s)	884, 1472
Aor13HI	TCCGGA	1 cut(s)	1012
ApeKI	GCWGC	3 cut(s)	256, 290, 1111
ApoI	RAATTY	3 cut(s)	274, 1176, 1717
ArsI	GACNNNNNNTTYG	2 cut(s)	1577, 1609
Asp700I	GAANNNNTTC	1 cut(s)	980
AspLEI	GCGC	4 cut(s)	488, 709, 711, 1039
AspS9I	GGNCC	6 cut(s)	444, 544, 613, 721, 730, 888
AsuC2I	CCSGG	4 cut(s)	388, 442, 920, 1229
AsuHPI	GGTGA	6 cut(s)	545, 1057, 1093, 1153, 1468, 1613
AsuII	TTCGAA	2 cut(s)	17, 873
AvaI	CYCGRG	2 cut(s)	884, 1472
AvaII	GGWCC	5 cut(s)	444, 544, 613, 730, 888
BalI	TGGCCA	3 cut(s)	794, 1519, 1560
BanI	GGYRCC	1 cut(s)	1036
BanII	GRGCYC	3 cut(s)	31, 666, 1608
BarI	GAAGNNNNNNTAC	2 cut(s)	953, 985
BauI	CACGAG	2 cut(s)	500, 725
BbrPI	CACGTG	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	1685
Bbv12I	GWGCWC	1 cut(s)	666
BbvI	GCAGC	3 cut(s)	268, 277, 1098
BccI	CCATC	3 cut(s)	119, 204, 1070
BceAI	ACGGC	7 cut(s)	499, 536, 553, 685, 757, 799, 1789
BcgI	CGANNNNNNTGC	2 cut(s)	733, 767
BciT130I	CCWGG	2 cut(s)	617, 1808
BciVI	GTATCC	1 cut(s)	448
BclI	TGATCA	1 cut(s)	1122
BcnI	CCSGG	4 cut(s)	388, 442, 920, 1229
BcoDI	GTCTC	5 cut(s)	165, 212, 334, 1014, 1578
BcuI	ACTAGT	1 cut(s)	82
BfaI	CTAG	2 cut(s)	83, 692
BfmI	CTRYAG	1 cut(s)	1112
BfoI	RGCGCY	1 cut(s)	1040
BfuAI	ACCTGC	1 cut(s)	1087
BfuI	GTATCC	1 cut(s)	448
BglI	GCCNNNNNGGC	1 cut(s)	678
BisI	GCNGC	7 cut(s)	257, 291, 466, 573, 862, 1035, 1112
BlpI	GCTNAGC	1 cut(s)	944
BlsI	GCNGC	7 cut(s)	258, 292, 467, 574, 863, 1036, 1113
Bme1390I	CCNGG	6 cut(s)	388, 442, 617, 920, 1229, 1808
Bme18I	GGWCC	5 cut(s)	444, 544, 613, 730, 888
BmeRI	GACNNNNNGTC	1 cut(s)	922
BmeT110I	CYCGRG	2 cut(s)	884, 1472
BmgBI	CACGTC	2 cut(s)	1018, 1683
BmgT120I	GGNCC	6 cut(s)	444, 544, 613, 721, 730, 888
BmiI	GGNNCC	7 cut(s)	445, 571, 732, 889, 1038, 1269, 1466
BmrFI	CCNGG	6 cut(s)	388, 442, 617, 920, 1229, 1808
BmsI	GCATC	4 cut(s)	147, 690, 753, 1038
BpiI	GAAGAC	1 cut(s)	1685
BpmI	CTGGAG	1 cut(s)	140
Bpu1102I	GCTNAGC	1 cut(s)	944
Bpu14I	TTCGAA	2 cut(s)	17, 873
BpuMI	CCSGG	4 cut(s)	388, 442, 920, 1229
BsaAI	YACGTR	1 cut(s)	374
BsaHI	GRCGYC	2 cut(s)	468, 1037
BsaI	GGTCTC	2 cut(s)	212, 334
BsaJI	CCNNGG	6 cut(s)	303, 667, 739, 801, 1514, 1539
BsaWI	WCCGGW	2 cut(s)	1012, 1315
BsaXI	ACNNNNNCTCC	6 cut(s)	211, 241, 659, 689, 1259, 1289
Bse118I	RCCGGY	6 cut(s)	505, 512, 761, 1138, 1388, 1467
Bse1I	ACTGG	4 cut(s)	157, 275, 615, 1561
Bse3DI	GCAATG	1 cut(s)	1503
BseAI	TCCGGA	1 cut(s)	1012
BseBI	CCWGG	2 cut(s)	617, 1808
BseDI	CCNNGG	6 cut(s)	303, 667, 739, 801, 1514, 1539
BseGI	GGATG	1 cut(s)	196
BseMI	GCAATG	1 cut(s)	1503
BseMII	CTCAG	4 cut(s)	162, 958, 1263, 1649
BseNI	ACTGG	4 cut(s)	157, 275, 615, 1561
BsePI	GCGCGC	1 cut(s)	707
BseRI	GAGGAG	3 cut(s)	55, 58, 1280
BseX3I	CGGCCG	1 cut(s)	859
BseXI	GCAGC	3 cut(s)	268, 277, 1098
BseYI	CCCAGC	1 cut(s)	734
Bsh1236I	CGCG	5 cut(s)	334, 488, 707, 709, 711
Bsh1285I	CGRYCG	3 cut(s)	510, 784, 862
BshNI	GGYRCC	1 cut(s)	1036
BsiEI	CGRYCG	3 cut(s)	510, 784, 862
BsiHKAI	GWGCWC	1 cut(s)	666
BsiHKCI	CYCGRG	2 cut(s)	884, 1472
BslFI	GGGAC	1 cut(s)	457
BsmAI	GTCTC	5 cut(s)	165, 212, 334, 1014, 1578
BsmFI	GGGAC	1 cut(s)	457
BsmI	GAATGC	4 cut(s)	461, 1229, 1261, 1714
Bso31I	GGTCTC	2 cut(s)	212, 334
BsoBI	CYCGRG	2 cut(s)	884, 1472
Bsp119I	TTCGAA	2 cut(s)	17, 873
Bsp1286I	GDGCHC	3 cut(s)	31, 666, 1608
Bsp13I	TCCGGA	1 cut(s)	1012
Bsp143I	GATC	7 cut(s)	107, 828, 897, 1122, 1143, 1293, 1546
Bsp1720I	GCTNAGC	1 cut(s)	944
BspCNI	CTCAG	4 cut(s)	161, 957, 1264, 1650
BspEI	TCCGGA	1 cut(s)	1012
BspFNI	CGCG	5 cut(s)	334, 488, 707, 709, 711
BspLI	GGNNCC	7 cut(s)	445, 571, 732, 889, 1038, 1269, 1466
BspMAI	CTGCAG	1 cut(s)	1116
BspMI	ACCTGC	1 cut(s)	1087
BspPI	GGATC	3 cut(s)	102, 836, 1554
BspT104I	TTCGAA	2 cut(s)	17, 873
BspT107I	GGYRCC	1 cut(s)	1036
BspTNI	GGTCTC	2 cut(s)	212, 334
BsrBI	CCGCTC	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	1503
BsrFI	RCCGGY	6 cut(s)	505, 512, 761, 1138, 1388, 1467
BsrI	ACTGG	4 cut(s)	157, 275, 615, 1561
BssAI	RCCGGY	6 cut(s)	505, 512, 761, 1138, 1388, 1467
BssECI	CCNNGG	6 cut(s)	303, 667, 739, 801, 1514, 1539
BssHII	GCGCGC	1 cut(s)	707
BssMI	GATC	7 cut(s)	107, 828, 897, 1122, 1143, 1293, 1546
BssNI	GRCGYC	2 cut(s)	468, 1037
BssSI	CACGAG	2 cut(s)	500, 725
BssT1I	CCWWGG	2 cut(s)	303, 1539
Bst2BI	CACGAG	2 cut(s)	500, 725
Bst2UI	CCWGG	2 cut(s)	617, 1808
Bst4CI	ACNGT	7 cut(s)	244, 533, 856, 1488, 1515, 1738, 1749
Bst6I	CTCTTC	2 cut(s)	956, 1346
BstACI	GRCGYC	2 cut(s)	468, 1037
BstBAI	YACGTR	1 cut(s)	374
BstBI	TTCGAA	2 cut(s)	17, 873
BstC8I	GCNNGC	6 cut(s)	514, 577, 662, 688, 709, 763
BstDEI	CTNAG	5 cut(s)	148, 766, 944, 1272, 1658
BstDSI	CCRYGG	3 cut(s)	667, 739, 1514
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	5 cut(s)	334, 488, 707, 709, 711
BstH2I	RGCGCY	1 cut(s)	1040
BstHHI	GCGC	4 cut(s)	488, 709, 711, 1039
BstKTI	GATC	7 cut(s)	110, 831, 900, 1125, 1146, 1296, 1549
BstMAI	GTCTC	5 cut(s)	165, 212, 334, 1014, 1578
BstMBI	GATC	7 cut(s)	107, 828, 897, 1122, 1143, 1293, 1546
BstMCI	CGRYCG	3 cut(s)	510, 784, 862
BstNI	CCWGG	2 cut(s)	617, 1808
BstNSI	RCATGY	4 cut(s)	313, 588, 814, 1436
BstSCI	CCNGG	6 cut(s)	386, 440, 615, 918, 1227, 1806
BstSFI	CTRYAG	1 cut(s)	1112
BstUI	CGCG	5 cut(s)	334, 488, 707, 709, 711
BstV1I	GCAGC	3 cut(s)	268, 277, 1098
BstV2I	GAAGAC	1 cut(s)	1685
BstX2I	RGATCY	2 cut(s)	107, 1546
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	2 cut(s)	107, 1546
BstZI	CGGCCG	1 cut(s)	859
BsuI	GTATCC	1 cut(s)	448
BtgI	CCRYGG	3 cut(s)	667, 739, 1514
BtgZI	GCGATG	2 cut(s)	97, 667
BtrI	CACGTC	2 cut(s)	1018, 1683
BtsCI	GGATG	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	428
BtsIMutI	CAGTG	4 cut(s)	268, 428, 594, 1734
BveI	ACCTGC	1 cut(s)	1087
Cac8I	GCNNGC	6 cut(s)	514, 577, 662, 688, 709, 763
CfoI	GCGC	4 cut(s)	488, 709, 711, 1039
Cfr10I	RCCGGY	6 cut(s)	505, 512, 761, 1138, 1388, 1467
Cfr13I	GGNCC	6 cut(s)	444, 544, 613, 721, 730, 888
CseI	GACGC	2 cut(s)	457, 1750
Csp6I	GTAC	1 cut(s)	817
CviQI	GTAC	1 cut(s)	817
DdeI	CTNAG	5 cut(s)	148, 766, 944, 1272, 1658
DinI	GGCGCC	1 cut(s)	1038
DpnI	GATC	7 cut(s)	109, 830, 899, 1124, 1145, 1295, 1548
DpnII	GATC	7 cut(s)	107, 828, 897, 1122, 1143, 1293, 1546
DrdI	GACNNNNNNGTC	4 cut(s)	374, 542, 1687, 1747
DriI	GACNNNNNGTC	1 cut(s)	922
DseDI	GACNNNNNNGTC	4 cut(s)	374, 542, 1687, 1747
EaeI	YGGCCR	7 cut(s)	514, 670, 792, 859, 928, 1517, 1558
EagI	CGGCCG	1 cut(s)	859
Eam1104I	CTCTTC	2 cut(s)	956, 1346
Eam1105I	GACNNNNNGTC	1 cut(s)	922
EarI	CTCTTC	2 cut(s)	956, 1346
EciI	GGCGGA	1 cut(s)	982
Ecl136II	GAGCTC	1 cut(s)	664
EclXI	CGGCCG	1 cut(s)	859
Eco130I	CCWWGG	2 cut(s)	303, 1539
Eco147I	AGGCCT	1 cut(s)	967
Eco24I	GRGCYC	3 cut(s)	31, 666, 1608
Eco31I	GGTCTC	2 cut(s)	212, 334
Eco47I	GGWCC	5 cut(s)	444, 544, 613, 730, 888
Eco52I	CGGCCG	1 cut(s)	859
Eco53kI	GAGCTC	1 cut(s)	664
Eco57I	CTGAAG	3 cut(s)	150, 266, 1682
Eco72I	CACGTG	1 cut(s)	374
Eco88I	CYCGRG	2 cut(s)	884, 1472
EcoICRI	GAGCTC	1 cut(s)	664
EcoRI	GAATTC	1 cut(s)	1176
EcoRII	CCWGG	2 cut(s)	615, 1806
EcoT14I	CCWWGG	2 cut(s)	303, 1539
EcoT22I	ATGCAT	2 cut(s)	461, 1307
EcoT38I	GRGCYC	3 cut(s)	31, 666, 1608
EgeI	GGCGCC	1 cut(s)	1038
EheI	GGCGCC	1 cut(s)	1038
ErhI	CCWWGG	2 cut(s)	303, 1539
FaqI	GGGAC	1 cut(s)	457
FauI	CCCGC	4 cut(s)	615, 695, 1124, 1441
FauNDI	CATATG	1 cut(s)	1762
FbaI	TGATCA	1 cut(s)	1122
FblI	GTMKAC	3 cut(s)	471, 915, 1397
Fnu4HI	GCNGC	7 cut(s)	257, 291, 466, 573, 862, 1035, 1112
FokI	GGATG	1 cut(s)	183
FriOI	GRGCYC	3 cut(s)	31, 666, 1608
Fsp4HI	GCNGC	7 cut(s)	257, 291, 466, 573, 862, 1035, 1112
FspBI	CTAG	2 cut(s)	83, 692
GlaI	GCGC	4 cut(s)	487, 708, 710, 1038
GluI	GCNGC	7 cut(s)	257, 291, 466, 573, 862, 1035, 1112
GsaI	CCCAGC	1 cut(s)	738
GsuI	CTGGAG	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	1040
HgaI	GACGC	2 cut(s)	457, 1750
HhaI	GCGC	4 cut(s)	488, 709, 711, 1039
Hin1I	GRCGYC	2 cut(s)	468, 1037
Hin6I	GCGC	4 cut(s)	486, 707, 709, 1037
HinP1I	GCGC	4 cut(s)	486, 707, 709, 1037
HincII	GTYRAC	2 cut(s)	916, 1398
HindII	GTYRAC	2 cut(s)	916, 1398
HphI	GGTGA	6 cut(s)	545, 1057, 1093, 1153, 1468, 1613
Hpy188III	TCNNGA	6 cut(s)	100, 1013, 1088, 1474, 1670, 1752
Hpy99I	CGWCG	4 cut(s)	533, 956, 1001, 1676
HpyAV	CCTTC	5 cut(s)	174, 311, 1618, 1629, 1786
HpyCH4III	ACNGT	7 cut(s)	244, 533, 856, 1488, 1515, 1738, 1749
HpyCH4IV	ACGT	6 cut(s)	373, 474, 954, 1017, 1682, 1778
HpyCH4V	TGCA	4 cut(s)	459, 1051, 1114, 1305
HpyF3I	CTNAG	5 cut(s)	148, 766, 944, 1272, 1658
HpySE526I	ACGT	6 cut(s)	373, 474, 954, 1017, 1682, 1778
Hsp92I	GRCGYC	2 cut(s)	468, 1037
HspAI	GCGC	4 cut(s)	486, 707, 709, 1037
KasI	GGCGCC	1 cut(s)	1036
Kpn2I	TCCGGA	1 cut(s)	1012
KroI	GCCGGC	2 cut(s)	512, 761
KroNI	GCCGGC	2 cut(s)	514, 763
Ksp22I	TGATCA	1 cut(s)	1122
Kzo9I	GATC	7 cut(s)	107, 828, 897, 1122, 1143, 1293, 1546
LmnI	GCTCC	9 cut(s)	403, 409, 569, 619, 669, 713, 1267, 1429, 1693
Lsp1109I	GCAGC	3 cut(s)	268, 277, 1098
LweI	GCATC	4 cut(s)	147, 690, 753, 1038
MaeI	CTAG	2 cut(s)	83, 692
MaeII	ACGT	6 cut(s)	373, 474, 954, 1017, 1682, 1778
MaeIII	GTNAC	4 cut(s)	244, 479, 533, 1738
MalI	GATC	7 cut(s)	109, 830, 899, 1124, 1145, 1295, 1548
MauBI	CGCGCGCG	1 cut(s)	707
MbiI	CCGCTC	1 cut(s)	622
MboI	GATC	7 cut(s)	107, 828, 897, 1122, 1143, 1293, 1546
MboII	GAAGA	9 cut(s)	69, 164, 517, 973, 1363, 1607, 1649, 1652, 1690
MflI	RGATCY	2 cut(s)	107, 1546
MhlI	GDGCHC	3 cut(s)	31, 666, 1608
MlsI	TGGCCA	3 cut(s)	794, 1519, 1560
MluCI	AATT	6 cut(s)	13, 274, 986, 1176, 1212, 1717
MluNI	TGGCCA	3 cut(s)	794, 1519, 1560
Mly113I	GGCGCC	1 cut(s)	1037
MlyI	GAGTC	7 cut(s)	759, 1283, 1303, 1313, 1393, 1403, 1781
MmeI	TCCRAC	3 cut(s)	294, 445, 1671
Mox20I	TGGCCA	3 cut(s)	794, 1519, 1560
Mph1103I	ATGCAT	2 cut(s)	461, 1307
MroI	TCCGGA	1 cut(s)	1012
MroNI	GCCGGC	2 cut(s)	512, 761
MroXI	GAANNNNTTC	1 cut(s)	980
MscI	TGGCCA	3 cut(s)	794, 1519, 1560
MseI	TTAA	1 cut(s)	1329
MslI	CAYNNNNRTG	1 cut(s)	1046
Msp20I	TGGCCA	3 cut(s)	794, 1519, 1560
MspR9I	CCNGG	6 cut(s)	388, 442, 617, 920, 1229, 1808
Mva1269I	GAATGC	4 cut(s)	461, 1229, 1261, 1714
MvaI	CCWGG	2 cut(s)	617, 1808
MvnI	CGCG	5 cut(s)	334, 488, 707, 709, 711
NaeI	GCCGGC	2 cut(s)	514, 763
NarI	GGCGCC	1 cut(s)	1037
NciI	CCSGG	4 cut(s)	388, 442, 920, 1229
NdeI	CATATG	1 cut(s)	1762
NdeII	GATC	7 cut(s)	107, 828, 897, 1122, 1143, 1293, 1546
NgoMIV	GCCGGC	2 cut(s)	512, 761
NlaIV	GGNNCC	7 cut(s)	445, 571, 732, 889, 1038, 1269, 1466
NmuCI	GTSAC	2 cut(s)	533, 1738
NsiI	ATGCAT	2 cut(s)	461, 1307
NspI	RCATGY	4 cut(s)	313, 588, 814, 1436
NspV	TTCGAA	2 cut(s)	17, 873
PaqCI	CACCTGC	1 cut(s)	1087
PauI	GCGCGC	1 cut(s)	707
PceI	AGGCCT	1 cut(s)	967
PciI	ACATGT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	3 cut(s)	636, 864, 1065
PctI	GAATGC	4 cut(s)	461, 1229, 1261, 1714
PdiI	GCCGGC	2 cut(s)	514, 763
PdmI	GAANNNNTTC	1 cut(s)	980
PfeI	GAWTC	3 cut(s)	1084, 1424, 1459
PflMI	CCANNNNNTGG	2 cut(s)	610, 1099
PfoI	TCCNGGA	2 cut(s)	440, 615
PkrI	GCNGC	7 cut(s)	258, 292, 467, 574, 863, 1036, 1113
PleI	GAGTC	7 cut(s)	758, 1282, 1303, 1313, 1393, 1402, 1781
PluTI	GGCGCC	1 cut(s)	1040
PmaCI	CACGTG	1 cut(s)	374
PmlI	CACGTG	1 cut(s)	374
PpsI	GAGTC	7 cut(s)	758, 1282, 1303, 1313, 1393, 1402, 1781
Ppu21I	YACGTR	1 cut(s)	374
PscI	ACATGT	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	666
Psp6I	CCWGG	2 cut(s)	615, 1806
PspCI	CACGTG	1 cut(s)	374
PspFI	CCCAGC	1 cut(s)	734
PspGI	CCWGG	2 cut(s)	615, 1806
PspN4I	GGNNCC	7 cut(s)	445, 571, 732, 889, 1038, 1269, 1466
PspPI	GGNCC	6 cut(s)	444, 544, 613, 721, 730, 888
PstI	CTGCAG	1 cut(s)	1116
PsuI	RGATCY	2 cut(s)	107, 1546
PteI	GCGCGC	1 cut(s)	707
RsaI	GTAC	1 cut(s)	818
RsaNI	GTAC	1 cut(s)	817
RseI	CAYNNNNRTG	1 cut(s)	1046
SacI	GAGCTC	1 cut(s)	666
SalI	GTCGAC	2 cut(s)	914, 1396
SaqAI	TTAA	1 cut(s)	1329
SatI	GCNGC	7 cut(s)	257, 291, 466, 573, 862, 1035, 1112
Sau3AI	GATC	7 cut(s)	107, 828, 897, 1122, 1143, 1293, 1546
Sau96I	GGNCC	6 cut(s)	444, 544, 613, 721, 730, 888
SchI	GAGTC	7 cut(s)	759, 1283, 1303, 1313, 1393, 1403, 1781
ScrFI	CCNGG	6 cut(s)	388, 442, 617, 920, 1229, 1808
SduI	GDGCHC	3 cut(s)	31, 666, 1608
SfaNI	GCATC	4 cut(s)	147, 690, 753, 1038
SfcI	CTRYAG	1 cut(s)	1112
SfoI	GGCGCC	1 cut(s)	1038
SfuI	TTCGAA	2 cut(s)	17, 873
SgrAI	CRCCGGYG	1 cut(s)	1138
SinI	GGWCC	5 cut(s)	444, 544, 613, 730, 888
SmiMI	CAYNNNNRTG	1 cut(s)	1046
SpeI	ACTAGT	1 cut(s)	82
Sse9I	AATT	6 cut(s)	13, 274, 986, 1176, 1212, 1717
SseBI	AGGCCT	1 cut(s)	967
SspDI	GGCGCC	1 cut(s)	1036
SspMI	CTAG	2 cut(s)	83, 692
SstI	GAGCTC	1 cut(s)	666
StuI	AGGCCT	1 cut(s)	967
StyD4I	CCNGG	6 cut(s)	386, 440, 615, 918, 1227, 1806
StyI	CCWWGG	2 cut(s)	303, 1539
TaaI	ACNGT	7 cut(s)	244, 533, 856, 1488, 1515, 1738, 1749
TaiI	ACGT	6 cut(s)	376, 477, 957, 1020, 1685, 1781
TaqI	TCGA	8 cut(s)	17, 528, 849, 873, 915, 1322, 1397, 1790
TasI	AATT	6 cut(s)	13, 274, 986, 1176, 1212, 1717
TauI	GCSGC	4 cut(s)	468, 575, 864, 1037
TfiI	GAWTC	3 cut(s)	1084, 1424, 1459
Tru1I	TTAA	1 cut(s)	1329
Tru9I	TTAA	1 cut(s)	1329
TscAI	CASTG	4 cut(s)	275, 435, 601, 1741
TseFI	GTSAC	2 cut(s)	533, 1738
TseI	GCWGC	3 cut(s)	256, 290, 1111
Tsp45I	GTSAC	2 cut(s)	533, 1738
TspDTI	ATGAA	4 cut(s)	1397, 1617, 1730, 1771
TspGWI	ACGGA	3 cut(s)	467, 582, 1596
TspRI	CASTG	4 cut(s)	275, 435, 601, 1741
Van91I	CCANNNNNTGG	2 cut(s)	610, 1099
VpaK11BI	GGWCC	5 cut(s)	444, 544, 613, 730, 888
XapI	RAATTY	3 cut(s)	274, 1176, 1717
XceI	RCATGY	4 cut(s)	313, 588, 814, 1436
XmiI	GTMKAC	3 cut(s)	471, 915, 1397
XmnI	GAANNNNTTC	1 cut(s)	980
XspI	CTAG	2 cut(s)	83, 692
Zsp2I	ATGCAT	2 cut(s)	461, 1307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.