Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0013872

Physical Location & Seq

Genomic Coordinates Forward (+)

10491135 .. 10493322

Gene Structure 2188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G009720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1812 bp

ATGGCTACTCCTTCGAATAGTTGGGCTCACACAGCCCAAATACAACACCACCTTTCTTCCCCCTCCTCTTTTTCTTCACTAGTAAACATGGGCTTCCCGACAAGATCCATCGCCTTGAACAGAAATAGAAGCAGCACCATTCACTCAGCTCTCCAGTCTCCTTCAGTTCTTCACTTCCCAAAACAGCCCTACCATCCGCGAGTTATTACCAAAGAGTCAACTATAACACCTTCTCCAAAGCCTAAAAAAGTAACTACAACGCAGCAACCTCCACACTGGAATCTGCTTCAGAGAACTGCCTCCACCGCCTTGGACATGTTGGAAGGTGCTTTGGTCTCGCGTGAGAGCCAAAACCCTCTCCCCAAAACCGCCGACCCACGTGTCCAAATCGCCGGGAACTTCGCTCCGGTGCCGGAGCAACCCGTCCGTCACTCATTGCCAGTATCCGGGACCATACCCGAATGCATTAGCGGCGTCTACGTCCGTAACGGCGCGAACCCCTTACACGAGCCGGTCGCCGGCCACCACTTCTTCGACGGTGACGGCATGGTCCACGCCGTCAGCATCAATGACGGAGCCGCCAGCTACGCATGTCGGTTCACTGAAACCCAAAGACTGGTCCAGGAGCGGGAAATCGGGCGACCCGTTTTCCCAAAAGCCATAGGCGAGCTCCACGGCCACTCCGGCATCGCCCGCCTCGCCTTGTTTTACGCGCGCGGCGCTTTGGGCCTCGTGGACCCCAGCCACGGCATCGGAGTCGCCAACGCCGGCTTAGTCTATTTCAACGACCGCCTCTTGGCCATGTCCGAGGACGACATGCCGTACCAAGTGCGGATCACTCCCTCCGGCGACCTCGAAACAGTGGGCCGCTACGACTTCGAAACCCAACTCGGGTCCACAATGATCGCCCACCCGAAAGTCGACCCGGTGTCCGGCCACCTCCACACGCTCAGCTACGACGTCGTGAAGAGGCCTCACCTGAAATACTTCCAATTCTCCGCCGACGGGGAGAAGTCTCCGGACGTGGAAATCCCTCTGGCTGCGCCCACAATGATGCACGACTTCGCCATCACGGAAAACTTCGTCGTGATTCCCGACCAGCAGGTGGTGTTCAAGCTGCAGGAGATGATCACCGGCGGGTCGCCGGTGATCTACGACAAGAACAAGAAATCCAGGTTCGGAATTCTGGCGAAAAATGCGACAAACGCTGATGACATAATTTGGGTTGAATGCCCGGACACTTTCTGCTTCCACTTGTGGAATGCGTGGGAGGAGCCTGAGTCCGATGAGGTGGTTGTGATCGGGTCATGCATGACTCCACCGGACTCGATATTTAATGAGAATGACGAGTGCTTGAAGAGTGTGTTGTCCGAAATCCGGCTCAATGTGAAAACCGGCGAGTCGACTCGGAGGCCGATTATTTCGGAGCATGTGAACTTGGAGGCCGGAATGGTGAATCGGAACCGGCTCGGGAGAAAGACTCGGTATGCTTATCTCGCCATTGCTGAACCGTGGCCAAAAGTTTCTGGTTTCGCCAAGGTGGATCTTTTTACTGGCCAAGTAAAAAAGCATATTTACGGGGACAGGAAGTTTGGTGGTGAGCCCTTCTTTCTTCCTTCGGGTTCATGTGGGGAAGAAGATGGGGGGTATATTCTGAGCTTTGTTCACGACGAGAAGACGTGGAAGTCGGAGCTTCAGATTGTGAATGCCATGAATTTGAAGCTGGAAGCCACTGTGACGCTGCCGTCAAGAGTTCCGTATGGATTTCACGGCACGTTCATAGACTCGAAGGACTTGAAAAACCAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009687 GO:0009688 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010431 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

603

Amino Acids

66.66

Weight (kDa)

6.41

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	134 - 595	5.8e-128	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30100 AT4G18350
fragaria_vesca	FvH4_3g05440
malus_domestica	MD05G1282700.v1.1 MD10G1261000.v1.1
prunus_persica	Prupe.4G082000_v2.0.a1
pyrus_communis	pycom05g26210
rosa_chinensis	RchiOBHm_Chr5g0014331
rosa_laevigata	RLG00000032098
rosa_multiflora	Rmu_co8232887.1_g000001 Rmu_sc0009295.1_g000002
rosa_rugosa	Rorug05G0017400
rosa_samantha	Rh5AG111500 Rh5BG108800 Rh5CG120500 Rh5DG107500
rosa_wichuraiana	Rw5G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1093
AasI	GACNNNNNNGTC	4 cut(s)	380, 548, 1684, 1744
AatII	GACGTC	1 cut(s)	963
Acc36I	ACCTGC	1 cut(s)	1093
AccB1I	GGYRCC	1 cut(s)	409
AccB7I	CCANNNNNTGG	2 cut(s)	616, 1105
AccBSI	CCGCTC	1 cut(s)	628
AccI	GTMKAC	3 cut(s)	477, 921, 1403
AccII	CGCG	6 cut(s)	199, 340, 494, 713, 715, 717
AccIII	TCCGGA	1 cut(s)	1018
AclWI	GGATC	3 cut(s)	99, 842, 1551
AcoI	YGGCCR	6 cut(s)	520, 676, 798, 934, 1514, 1555
AcsI	RAATTY	2 cut(s)	1182, 1714
AcuI	CTGAAG	3 cut(s)	147, 272, 1679
AcvI	CACGTG	1 cut(s)	380
AcyI	GRCGYC	2 cut(s)	474, 960
AfaI	GTAC	1 cut(s)	824
AflIII	ACRYGT	2 cut(s)	315, 379
AgsI	TTSAA	7 cut(s)	118, 784, 1114, 1229, 1357, 1720, 1798
AhdI	GACNNNNNGTC	1 cut(s)	928
AhlI	ACTAGT	1 cut(s)	79
AjiI	CACGTC	2 cut(s)	1024, 1680
AjnI	CCWGG	3 cut(s)	621, 1172, 1803
AloI	GAACNNNNNNTCC	2 cut(s)	1154, 1186
AluBI	AGCT	8 cut(s)	149, 585, 670, 954, 1117, 1659, 1693, 1723
AluI	AGCT	8 cut(s)	149, 585, 670, 954, 1117, 1659, 1693, 1723
Alw21I	GWGCWC	1 cut(s)	672
Alw26I	GTCTC	3 cut(s)	162, 340, 1020
AlwI	GGATC	3 cut(s)	99, 842, 1551
Ama87I	CYCGRG	2 cut(s)	890, 1469
Aor13HI	TCCGGA	1 cut(s)	1018
ApeKI	GCWGC	5 cut(s)	132, 262, 1040, 1117, 1741
ApoI	RAATTY	2 cut(s)	1182, 1714
ArsI	GACNNNNNNTTYG	2 cut(s)	1574, 1606
Asp700I	GAANNNNTTC	1 cut(s)	986
AspLEI	GCGC	5 cut(s)	494, 715, 717, 722, 1045
AspS9I	GGNCC	7 cut(s)	450, 550, 619, 727, 736, 865, 894
AsuC2I	CCSGG	4 cut(s)	394, 448, 926, 1235
AsuHPI	GGTGA	6 cut(s)	551, 968, 1123, 1159, 1465, 1610
AsuII	TTCGAA	2 cut(s)	14, 879
AvaI	CYCGRG	2 cut(s)	890, 1469
AvaII	GGWCC	5 cut(s)	450, 550, 619, 736, 894
BalI	TGGCCA	3 cut(s)	800, 1516, 1557
BanI	GGYRCC	1 cut(s)	409
BanII	GRGCYC	3 cut(s)	28, 672, 1605
BauI	CACGAG	2 cut(s)	506, 731
BbrPI	CACGTG	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	1682
Bbv12I	GWGCWC	1 cut(s)	672
BbvI	GCAGC	5 cut(s)	144, 274, 1027, 1104, 1728
BccI	CCATC	4 cut(s)	116, 201, 1076, 1634
BceAI	ACGGC	8 cut(s)	505, 542, 559, 691, 763, 805, 1729, 1786
BcgI	CGANNNNNNTGC	2 cut(s)	739, 773
BciT130I	CCWGG	3 cut(s)	623, 1174, 1805
BciVI	GTATCC	1 cut(s)	454
BclI	TGATCA	1 cut(s)	1128
BcnI	CCSGG	4 cut(s)	394, 448, 926, 1235
BcoDI	GTCTC	3 cut(s)	162, 340, 1020
BcuI	ACTAGT	1 cut(s)	79
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	1118
BfoI	RGCGCY	1 cut(s)	723
BfuAI	ACCTGC	1 cut(s)	1093
BfuI	GTATCC	1 cut(s)	454
BglI	GCCNNNNNGGC	1 cut(s)	684
BisI	GCNGC	9 cut(s)	133, 263, 472, 579, 718, 868, 1041, 1118, 1742
BlpI	GCTNAGC	1 cut(s)	950
BlsI	GCNGC	9 cut(s)	134, 264, 473, 580, 719, 869, 1042, 1119, 1743
Bme1390I	CCNGG	7 cut(s)	394, 448, 623, 926, 1174, 1235, 1805
Bme18I	GGWCC	5 cut(s)	450, 550, 619, 736, 894
BmeRI	GACNNNNNGTC	1 cut(s)	928
BmeT110I	CYCGRG	2 cut(s)	890, 1469
BmgBI	CACGTC	2 cut(s)	1024, 1680
BmgT120I	GGNCC	7 cut(s)	450, 550, 619, 727, 736, 865, 894
BmiI	GGNNCC	7 cut(s)	411, 451, 577, 738, 895, 1275, 1463
BmrFI	CCNGG	7 cut(s)	394, 448, 623, 926, 1174, 1235, 1805
BmsI	GCATC	4 cut(s)	573, 696, 759, 1044
BpiI	GAAGAC	1 cut(s)	1682
BplI	GAGNNNNNCTC	2 cut(s)	1465, 1497
BpmI	CTGGAG	1 cut(s)	137
Bpu1102I	GCTNAGC	1 cut(s)	950
Bpu14I	TTCGAA	2 cut(s)	14, 879
BpuMI	CCSGG	4 cut(s)	394, 448, 926, 1235
BsaAI	YACGTR	1 cut(s)	380
BsaHI	GRCGYC	2 cut(s)	474, 960
BsaI	GGTCTC	1 cut(s)	340
BsaJI	CCNNGG	6 cut(s)	309, 673, 745, 807, 1511, 1536
BsaWI	WCCGGW	3 cut(s)	406, 1018, 1321
BsaXI	ACNNNNNCTCC	6 cut(s)	217, 247, 665, 695, 1265, 1295
Bse118I	RCCGGY	7 cut(s)	511, 518, 767, 1133, 1144, 1394, 1464
Bse1I	ACTGG	5 cut(s)	154, 281, 440, 621, 1558
Bse3DI	GCAATG	2 cut(s)	434, 1500
BseAI	TCCGGA	1 cut(s)	1018
BseBI	CCWGG	3 cut(s)	623, 1174, 1805
BseDI	CCNNGG	6 cut(s)	309, 673, 745, 807, 1511, 1536
BseGI	GGATG	1 cut(s)	193
BseMI	GCAATG	2 cut(s)	434, 1500
BseMII	CTCAG	4 cut(s)	159, 964, 1269, 1646
BseNI	ACTGG	5 cut(s)	154, 281, 440, 621, 1558
BsePI	GCGCGC	1 cut(s)	713
BseRI	GAGGAG	2 cut(s)	55, 1286
BseXI	GCAGC	5 cut(s)	144, 274, 1027, 1104, 1728
BseYI	CCCAGC	1 cut(s)	740
Bsh1236I	CGCG	6 cut(s)	199, 340, 494, 713, 715, 717
Bsh1285I	CGRYCG	2 cut(s)	516, 790
BshNI	GGYRCC	1 cut(s)	409
BsiEI	CGRYCG	2 cut(s)	516, 790
BsiHKAI	GWGCWC	1 cut(s)	672
BsiHKCI	CYCGRG	2 cut(s)	890, 1469
BslFI	GGGAC	2 cut(s)	463, 1595
BsmAI	GTCTC	3 cut(s)	162, 340, 1020
BsmFI	GGGAC	2 cut(s)	463, 1595
BsmI	GAATGC	4 cut(s)	467, 1235, 1267, 1711
Bso31I	GGTCTC	1 cut(s)	340
BsoBI	CYCGRG	2 cut(s)	890, 1469
Bsp119I	TTCGAA	2 cut(s)	14, 879
Bsp1286I	GDGCHC	3 cut(s)	28, 672, 1605
Bsp13I	TCCGGA	1 cut(s)	1018
Bsp143I	GATC	7 cut(s)	104, 834, 903, 1128, 1149, 1299, 1543
Bsp1720I	GCTNAGC	1 cut(s)	950
BspCNI	CTCAG	4 cut(s)	158, 963, 1270, 1647
BspEI	TCCGGA	1 cut(s)	1018
BspFNI	CGCG	6 cut(s)	199, 340, 494, 713, 715, 717
BspLI	GGNNCC	7 cut(s)	411, 451, 577, 738, 895, 1275, 1463
BspMAI	CTGCAG	1 cut(s)	1122
BspMI	ACCTGC	1 cut(s)	1093
BspPI	GGATC	3 cut(s)	99, 842, 1551
BspT104I	TTCGAA	2 cut(s)	14, 879
BspT107I	GGYRCC	1 cut(s)	409
BspTNI	GGTCTC	1 cut(s)	340
BsrBI	CCGCTC	1 cut(s)	628
BsrDI	GCAATG	2 cut(s)	434, 1500
BsrFI	RCCGGY	7 cut(s)	511, 518, 767, 1133, 1144, 1394, 1464
BsrI	ACTGG	5 cut(s)	154, 281, 440, 621, 1558
BssAI	RCCGGY	7 cut(s)	511, 518, 767, 1133, 1144, 1394, 1464
BssECI	CCNNGG	6 cut(s)	309, 673, 745, 807, 1511, 1536
BssHII	GCGCGC	1 cut(s)	713
BssMI	GATC	7 cut(s)	104, 834, 903, 1128, 1149, 1299, 1543
BssNI	GRCGYC	2 cut(s)	474, 960
BssSI	CACGAG	2 cut(s)	506, 731
BssT1I	CCWWGG	2 cut(s)	309, 1536
Bst2BI	CACGAG	2 cut(s)	506, 731
Bst2UI	CCWGG	3 cut(s)	623, 1174, 1805
Bst4CI	ACNGT	4 cut(s)	539, 862, 1512, 1735
Bst6I	CTCTTC	2 cut(s)	962, 1352
BstACI	GRCGYC	2 cut(s)	474, 960
BstBAI	YACGTR	1 cut(s)	380
BstBI	TTCGAA	2 cut(s)	14, 879
BstC8I	GCNNGC	6 cut(s)	520, 583, 668, 694, 715, 769
BstDEI	CTNAG	5 cut(s)	145, 772, 950, 1278, 1655
BstDSI	CCRYGG	3 cut(s)	673, 745, 1511
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	6 cut(s)	199, 340, 494, 713, 715, 717
BstH2I	RGCGCY	1 cut(s)	723
BstHHI	GCGC	5 cut(s)	494, 715, 717, 722, 1045
BstKTI	GATC	7 cut(s)	107, 837, 906, 1131, 1152, 1302, 1546
BstMAI	GTCTC	3 cut(s)	162, 340, 1020
BstMBI	GATC	7 cut(s)	104, 834, 903, 1128, 1149, 1299, 1543
BstMCI	CGRYCG	2 cut(s)	516, 790
BstNI	CCWGG	3 cut(s)	623, 1174, 1805
BstNSI	RCATGY	4 cut(s)	319, 594, 820, 1433
BstSCI	CCNGG	7 cut(s)	392, 446, 621, 924, 1172, 1233, 1803
BstSFI	CTRYAG	1 cut(s)	1118
BstUI	CGCG	6 cut(s)	199, 340, 494, 713, 715, 717
BstV1I	GCAGC	5 cut(s)	144, 274, 1027, 1104, 1728
BstV2I	GAAGAC	1 cut(s)	1682
BstX2I	RGATCY	2 cut(s)	104, 1543
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstYI	RGATCY	2 cut(s)	104, 1543
BsuI	GTATCC	1 cut(s)	454
BtgI	CCRYGG	3 cut(s)	673, 745, 1511
BtgZI	GCGATG	2 cut(s)	94, 673
BtrI	CACGTC	2 cut(s)	1024, 1680
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	4 cut(s)	274, 600, 867, 1731
BveI	ACCTGC	1 cut(s)	1093
Cac8I	GCNNGC	6 cut(s)	520, 583, 668, 694, 715, 769
CfoI	GCGC	5 cut(s)	494, 715, 717, 722, 1045
Cfr10I	RCCGGY	7 cut(s)	511, 518, 767, 1133, 1144, 1394, 1464
Cfr13I	GGNCC	7 cut(s)	450, 550, 619, 727, 736, 865, 894
CseI	GACGC	2 cut(s)	463, 1747
Csp6I	GTAC	1 cut(s)	823
CviQI	GTAC	1 cut(s)	823
DdeI	CTNAG	5 cut(s)	145, 772, 950, 1278, 1655
DpnI	GATC	7 cut(s)	106, 836, 905, 1130, 1151, 1301, 1545
DpnII	GATC	7 cut(s)	104, 834, 903, 1128, 1149, 1299, 1543
DrdI	GACNNNNNNGTC	4 cut(s)	380, 548, 1684, 1744
DriI	GACNNNNNGTC	1 cut(s)	928
DseDI	GACNNNNNNGTC	4 cut(s)	380, 548, 1684, 1744
EaeI	YGGCCR	6 cut(s)	520, 676, 798, 934, 1514, 1555
Eam1104I	CTCTTC	2 cut(s)	962, 1352
Eam1105I	GACNNNNNGTC	1 cut(s)	928
EarI	CTCTTC	2 cut(s)	962, 1352
EciI	GGCGGA	1 cut(s)	988
Ecl136II	GAGCTC	1 cut(s)	670
Eco130I	CCWWGG	2 cut(s)	309, 1536
Eco147I	AGGCCT	1 cut(s)	973
Eco24I	GRGCYC	3 cut(s)	28, 672, 1605
Eco31I	GGTCTC	1 cut(s)	340
Eco47I	GGWCC	5 cut(s)	450, 550, 619, 736, 894
Eco53kI	GAGCTC	1 cut(s)	670
Eco57I	CTGAAG	3 cut(s)	147, 272, 1679
Eco72I	CACGTG	1 cut(s)	380
Eco88I	CYCGRG	2 cut(s)	890, 1469
EcoICRI	GAGCTC	1 cut(s)	670
EcoRI	GAATTC	1 cut(s)	1182
EcoRII	CCWGG	3 cut(s)	621, 1172, 1803
EcoT14I	CCWWGG	2 cut(s)	309, 1536
EcoT22I	ATGCAT	2 cut(s)	467, 1313
EcoT38I	GRGCYC	3 cut(s)	28, 672, 1605
ErhI	CCWWGG	2 cut(s)	309, 1536
FaqI	GGGAC	2 cut(s)	463, 1595
FauI	CCCGC	3 cut(s)	621, 701, 1130
FbaI	TGATCA	1 cut(s)	1128
FblI	GTMKAC	3 cut(s)	477, 921, 1403
Fnu4HI	GCNGC	9 cut(s)	133, 263, 472, 579, 718, 868, 1041, 1118, 1742
FokI	GGATG	1 cut(s)	180
FriOI	GRGCYC	3 cut(s)	28, 672, 1605
Fsp4HI	GCNGC	9 cut(s)	133, 263, 472, 579, 718, 868, 1041, 1118, 1742
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	5 cut(s)	493, 714, 716, 721, 1044
GluI	GCNGC	9 cut(s)	133, 263, 472, 579, 718, 868, 1041, 1118, 1742
GsaI	CCCAGC	1 cut(s)	744
GsuI	CTGGAG	1 cut(s)	137
HaeII	RGCGCY	1 cut(s)	723
HgaI	GACGC	2 cut(s)	463, 1747
HhaI	GCGC	5 cut(s)	494, 715, 717, 722, 1045
Hin1I	GRCGYC	2 cut(s)	474, 960
Hin6I	GCGC	5 cut(s)	492, 713, 715, 720, 1043
HinP1I	GCGC	5 cut(s)	492, 713, 715, 720, 1043
HincII	GTYRAC	3 cut(s)	219, 922, 1404
HindII	GTYRAC	3 cut(s)	219, 922, 1404
HphI	GGTGA	6 cut(s)	551, 968, 1123, 1159, 1465, 1610
Hpy188III	TCNNGA	8 cut(s)	97, 964, 1019, 1087, 1094, 1471, 1667, 1749
Hpy99I	CGWCG	6 cut(s)	539, 962, 965, 1007, 1088, 1673
HpyAV	CCTTC	7 cut(s)	21, 171, 240, 317, 1615, 1626, 1783
HpyCH4III	ACNGT	4 cut(s)	539, 862, 1512, 1735
HpyCH4IV	ACGT	6 cut(s)	379, 480, 960, 1023, 1679, 1775
HpyCH4V	TGCA	4 cut(s)	465, 1057, 1120, 1311
HpyF3I	CTNAG	5 cut(s)	145, 772, 950, 1278, 1655
HpySE526I	ACGT	6 cut(s)	379, 480, 960, 1023, 1679, 1775
Hsp92I	GRCGYC	2 cut(s)	474, 960
HspAI	GCGC	5 cut(s)	492, 713, 715, 720, 1043
Kpn2I	TCCGGA	1 cut(s)	1018
KroI	GCCGGC	2 cut(s)	518, 767
KroNI	GCCGGC	2 cut(s)	520, 769
Ksp22I	TGATCA	1 cut(s)	1128
Kzo9I	GATC	7 cut(s)	104, 834, 903, 1128, 1149, 1299, 1543
LmnI	GCTCC	8 cut(s)	409, 415, 575, 625, 675, 1273, 1426, 1690
Lsp1109I	GCAGC	5 cut(s)	144, 274, 1027, 1104, 1728
LweI	GCATC	4 cut(s)	573, 696, 759, 1044
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	6 cut(s)	379, 480, 960, 1023, 1679, 1775
MaeIII	GTNAC	5 cut(s)	250, 428, 485, 539, 1735
MalI	GATC	7 cut(s)	106, 836, 905, 1130, 1151, 1301, 1545
MauBI	CGCGCGCG	1 cut(s)	713
MbiI	CCGCTC	1 cut(s)	628
MboI	GATC	7 cut(s)	104, 834, 903, 1128, 1149, 1299, 1543
MflI	RGATCY	2 cut(s)	104, 1543
MhlI	GDGCHC	3 cut(s)	28, 672, 1605
MlsI	TGGCCA	3 cut(s)	800, 1516, 1557
MluCI	AATT	4 cut(s)	992, 1182, 1218, 1714
MluNI	TGGCCA	3 cut(s)	800, 1516, 1557
MlyI	GAGTC	9 cut(s)	224, 765, 1289, 1309, 1319, 1399, 1409, 1474, 1778
MmeI	TCCRAC	2 cut(s)	300, 1668
Mox20I	TGGCCA	3 cut(s)	800, 1516, 1557
Mph1103I	ATGCAT	2 cut(s)	467, 1313
MroI	TCCGGA	1 cut(s)	1018
MroNI	GCCGGC	2 cut(s)	518, 767
MroXI	GAANNNNTTC	1 cut(s)	986
MscI	TGGCCA	3 cut(s)	800, 1516, 1557
MseI	TTAA	1 cut(s)	1335
MslI	CAYNNNNRTG	1 cut(s)	1052
Msp20I	TGGCCA	3 cut(s)	800, 1516, 1557
MspR9I	CCNGG	7 cut(s)	394, 448, 623, 926, 1174, 1235, 1805
MteI	GCGCNGCGC	1 cut(s)	718
Mva1269I	GAATGC	4 cut(s)	467, 1235, 1267, 1711
MvaI	CCWGG	3 cut(s)	623, 1174, 1805
MvnI	CGCG	6 cut(s)	199, 340, 494, 713, 715, 717
NaeI	GCCGGC	2 cut(s)	520, 769
NciI	CCSGG	4 cut(s)	394, 448, 926, 1235
NdeII	GATC	7 cut(s)	104, 834, 903, 1128, 1149, 1299, 1543
NgoMIV	GCCGGC	2 cut(s)	518, 767
NlaIV	GGNNCC	7 cut(s)	411, 451, 577, 738, 895, 1275, 1463
NmuCI	GTSAC	3 cut(s)	428, 539, 1735
NsiI	ATGCAT	2 cut(s)	467, 1313
NspI	RCATGY	4 cut(s)	319, 594, 820, 1433
NspV	TTCGAA	2 cut(s)	14, 879
PaqCI	CACCTGC	1 cut(s)	1093
PauI	GCGCGC	1 cut(s)	713
PceI	AGGCCT	1 cut(s)	973
PciI	ACATGT	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	2 cut(s)	642, 1092
PctI	GAATGC	4 cut(s)	467, 1235, 1267, 1711
PdiI	GCCGGC	2 cut(s)	520, 769
PdmI	GAANNNNTTC	1 cut(s)	986
PfeI	GAWTC	3 cut(s)	280, 1090, 1456
PflMI	CCANNNNNTGG	2 cut(s)	616, 1105
PfoI	TCCNGGA	2 cut(s)	446, 621
PkrI	GCNGC	9 cut(s)	134, 264, 473, 580, 719, 869, 1042, 1119, 1743
PleI	GAGTC	9 cut(s)	223, 764, 1288, 1309, 1319, 1399, 1408, 1474, 1778
PmaCI	CACGTG	1 cut(s)	380
PmlI	CACGTG	1 cut(s)	380
PpsI	GAGTC	9 cut(s)	223, 764, 1288, 1309, 1319, 1399, 1408, 1474, 1778
Ppu21I	YACGTR	1 cut(s)	380
PscI	ACATGT	1 cut(s)	315
Psp124BI	GAGCTC	1 cut(s)	672
Psp6I	CCWGG	3 cut(s)	621, 1172, 1803
PspCI	CACGTG	1 cut(s)	380
PspFI	CCCAGC	1 cut(s)	740
PspGI	CCWGG	3 cut(s)	621, 1172, 1803
PspN4I	GGNNCC	7 cut(s)	411, 451, 577, 738, 895, 1275, 1463
PspPI	GGNCC	7 cut(s)	450, 550, 619, 727, 736, 865, 894
PstI	CTGCAG	1 cut(s)	1122
PsuI	RGATCY	2 cut(s)	104, 1543
PteI	GCGCGC	1 cut(s)	713
RsaI	GTAC	1 cut(s)	824
RsaNI	GTAC	1 cut(s)	823
RseI	CAYNNNNRTG	1 cut(s)	1052
SacI	GAGCTC	1 cut(s)	672
SalI	GTCGAC	2 cut(s)	920, 1402
SaqAI	TTAA	1 cut(s)	1335
SatI	GCNGC	9 cut(s)	133, 263, 472, 579, 718, 868, 1041, 1118, 1742
Sau3AI	GATC	7 cut(s)	104, 834, 903, 1128, 1149, 1299, 1543
Sau96I	GGNCC	7 cut(s)	450, 550, 619, 727, 736, 865, 894
SchI	GAGTC	9 cut(s)	224, 765, 1289, 1309, 1319, 1399, 1409, 1474, 1778
ScrFI	CCNGG	7 cut(s)	394, 448, 623, 926, 1174, 1235, 1805
SduI	GDGCHC	3 cut(s)	28, 672, 1605
SfaNI	GCATC	4 cut(s)	573, 696, 759, 1044
SfcI	CTRYAG	1 cut(s)	1118
SfuI	TTCGAA	2 cut(s)	14, 879
SgrAI	CRCCGGYG	2 cut(s)	1133, 1144
SinI	GGWCC	5 cut(s)	450, 550, 619, 736, 894
SmiMI	CAYNNNNRTG	1 cut(s)	1052
SpeI	ACTAGT	1 cut(s)	79
Sse9I	AATT	4 cut(s)	992, 1182, 1218, 1714
SseBI	AGGCCT	1 cut(s)	973
SspMI	CTAG	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	672
StuI	AGGCCT	1 cut(s)	973
StyD4I	CCNGG	7 cut(s)	392, 446, 621, 924, 1172, 1233, 1803
StyI	CCWWGG	2 cut(s)	309, 1536
TaaI	ACNGT	4 cut(s)	539, 862, 1512, 1735
TaiI	ACGT	6 cut(s)	382, 483, 963, 1026, 1682, 1778
TaqI	TCGA	8 cut(s)	14, 534, 855, 879, 921, 1328, 1403, 1787
TasI	AATT	4 cut(s)	992, 1182, 1218, 1714
TauI	GCSGC	4 cut(s)	474, 581, 720, 870
TfiI	GAWTC	3 cut(s)	280, 1090, 1456
Tru1I	TTAA	1 cut(s)	1335
Tru9I	TTAA	1 cut(s)	1335
TscAI	CASTG	4 cut(s)	281, 607, 867, 1738
TseFI	GTSAC	3 cut(s)	428, 539, 1735
TseI	GCWGC	5 cut(s)	132, 262, 1040, 1117, 1741
Tsp45I	GTSAC	3 cut(s)	428, 539, 1735
TspDTI	ATGAA	3 cut(s)	1614, 1727, 1768
TspGWI	ACGGA	5 cut(s)	416, 473, 588, 1088, 1746
TspRI	CASTG	4 cut(s)	281, 607, 867, 1738
Van91I	CCANNNNNTGG	2 cut(s)	616, 1105
VpaK11BI	GGWCC	5 cut(s)	450, 550, 619, 736, 894
XapI	RAATTY	2 cut(s)	1182, 1714
XceI	RCATGY	4 cut(s)	319, 594, 820, 1433
XmiI	GTMKAC	3 cut(s)	477, 921, 1403
XmnI	GAANNNNTTC	1 cut(s)	986
XspI	CTAG	1 cut(s)	80
ZraI	GACGTC	1 cut(s)	961
Zsp2I	ATGCAT	2 cut(s)	467, 1313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.