Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8232887.1

Orthogroup ID

OG0013872

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 557

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8232887.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 556 bp

atgggcttcccgacaagatccatcgccttgaacagaaatagaagcagcaccattcactcagctctccagtctccttcagttcttcacttcccaaaacagccctaccatccgcgagttattaccaaagaggcaactataacaccttctccaaagcctaaaaaagtaactacaacgcagcaacctccacactggaatctgcttcagagagctgcctccaccgccttggacatgttggaaggtgctttggtctcgcgtgagagccaaaaccctctccccaaaaccgccgacccacgtgtccaaatcgccgggaacttcgctccggtgccggagcaacccgtccgtcactcattgcccgtatccgggaccatacccgaatgcattagcggcgtctacgtccgtaacggcgccaaccccttacacgagccggtcgccggccaccacttcttcgacggtgacggcatggtccacgccgtcagcatcaatgacggagccgccagctacgcatgtcggttcactgaaacccaaagactggtccaggagcgggaaatcgggcgac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009687 GO:0009688 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010431 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

185

Amino Acids

20.23

Weight (kDa)

9.56

Isoelectric Point (pI)

57.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30100 AT4G18350
fragaria_vesca	FvH4_3g05440
malus_domestica	MD05G1282700.v1.1 MD10G1261000.v1.1
prunus_persica	Prupe.4G082000_v2.0.a1
pyrus_communis	pycom05g26210
rosa_chinensis	RchiOBHm_Chr5g0014331
rosa_laevigata	RLG00000032098
rosa_multiflora	Rmu_co8232887.1_g000001 Rmu_sc0009295.1_g000002
rosa_rugosa	Rorug05G0017400
rosa_samantha	Rh5AG111500 Rh5BG108800 Rh5CG120500 Rh5DG107500
rosa_wichuraiana	Rw5G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	293, 461
AccB1I	GGYRCC	2 cut(s)	322, 404
AccB7I	CCANNNNNTGG	1 cut(s)	529
AccBSI	CCGCTC	1 cut(s)	541
AccI	GTMKAC	1 cut(s)	390
AccII	CGCG	2 cut(s)	112, 253
AciI	CCGC	6 cut(s)	110, 219, 282, 384, 492, 541
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	433
AcuI	CTGAAG	2 cut(s)	60, 185
AcvI	CACGTG	1 cut(s)	293
AcyI	GRCGYC	2 cut(s)	387, 405
AfiI	CCNNNNNNNGG	5 cut(s)	359, 360, 431, 529, 541
AflIII	ACRYGT	2 cut(s)	228, 292
AgsI	TTSAA	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	3 cut(s)	62, 209, 498
AluI	AGCT	3 cut(s)	62, 209, 498
Alw26I	GTCTC	2 cut(s)	75, 253
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	433
ApeKI	GCWGC	3 cut(s)	45, 175, 209
AspLEI	GCGC	1 cut(s)	407
AspS9I	GGNCC	3 cut(s)	363, 463, 532
AsuC2I	CCSGG	2 cut(s)	307, 361
AsuHPI	GGTGA	1 cut(s)	464
AvaII	GGWCC	3 cut(s)	363, 463, 532
BanI	GGYRCC	2 cut(s)	322, 404
BauI	CACGAG	1 cut(s)	419
BbrPI	CACGTG	1 cut(s)	293
BbvI	GCAGC	3 cut(s)	57, 187, 196
BccI	CCATC	2 cut(s)	29, 114
BceAI	ACGGC	3 cut(s)	418, 455, 472
BciT130I	CCWGG	1 cut(s)	536
BciVI	GTATCC	1 cut(s)	367
BcnI	CCSGG	2 cut(s)	307, 361
BcoDI	GTCTC	2 cut(s)	75, 253
BfoI	RGCGCY	1 cut(s)	408
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	5 cut(s)	46, 176, 210, 385, 492
BlsI	GCNGC	5 cut(s)	47, 177, 211, 386, 493
Bme1390I	CCNGG	3 cut(s)	307, 361, 536
Bme18I	GGWCC	3 cut(s)	363, 463, 532
BmgT120I	GGNCC	3 cut(s)	363, 463, 532
BmiI	GGNNCC	4 cut(s)	324, 364, 406, 490
BmrFI	CCNGG	3 cut(s)	307, 361, 536
BmsI	GCATC	1 cut(s)	486
BpmI	CTGGAG	1 cut(s)	50
BpuMI	CCSGG	2 cut(s)	307, 361
BsaAI	YACGTR	1 cut(s)	293
BsaHI	GRCGYC	2 cut(s)	387, 405
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	5 cut(s)	359, 360, 431, 529, 541
Bse118I	RCCGGY	2 cut(s)	424, 431
Bse1I	ACTGG	3 cut(s)	67, 194, 534
Bse3DI	GCAATG	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	5 cut(s)	359, 360, 431, 529, 541
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	3 cut(s)	67, 194, 534
BseXI	GCAGC	3 cut(s)	57, 187, 196
Bsh1236I	CGCG	2 cut(s)	112, 253
Bsh1285I	CGRYCG	1 cut(s)	429
BshFI	GGCC	1 cut(s)	435
BshNI	GGYRCC	2 cut(s)	322, 404
BsiEI	CGRYCG	1 cut(s)	429
BsiSI	CCGG	6 cut(s)	306, 320, 326, 360, 425, 432
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	5 cut(s)	359, 360, 431, 529, 541
BsmAI	GTCTC	2 cut(s)	75, 253
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	1 cut(s)	435
Bso31I	GGTCTC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	6 cut(s)	110, 219, 282, 384, 492, 541
BspANI	GGCC	1 cut(s)	435
BspCNI	CTCAG	1 cut(s)	71
BspFNI	CGCG	2 cut(s)	112, 253
BspLI	GGNNCC	4 cut(s)	324, 364, 406, 490
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	322, 404
BspTNI	GGTCTC	1 cut(s)	253
BsrBI	CCGCTC	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	347
BsrFI	RCCGGY	2 cut(s)	424, 431
BsrI	ACTGG	3 cut(s)	67, 194, 534
BssAI	RCCGGY	2 cut(s)	424, 431
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	1 cut(s)	17
BssNI	GRCGYC	2 cut(s)	387, 405
BssSI	CACGAG	1 cut(s)	419
BssT1I	CCWWGG	1 cut(s)	222
Bst2BI	CACGAG	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	1 cut(s)	452
BstACI	GRCGYC	2 cut(s)	387, 405
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	433, 496
BstDEI	CTNAG	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	106
BstFNI	CGCG	2 cut(s)	112, 253
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	2 cut(s)	75, 253
BstMBI	GATC	1 cut(s)	17
BstMCI	CGRYCG	1 cut(s)	429
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 384, 500
BstNI	CCWGG	1 cut(s)	536
BstNSI	RCATGY	2 cut(s)	232, 507
BstSCI	CCNGG	3 cut(s)	305, 359, 534
BstUI	CGCG	2 cut(s)	112, 253
BstV1I	GCAGC	3 cut(s)	57, 187, 196
BstX2I	RGATCY	1 cut(s)	17
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	17
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	435
BtgZI	GCGATG	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	187, 513
Cac8I	GCNNGC	2 cut(s)	433, 496
CfoI	GCGC	1 cut(s)	407
Cfr10I	RCCGGY	2 cut(s)	424, 431
Cfr13I	GGNCC	3 cut(s)	363, 463, 532
CseI	GACGC	1 cut(s)	376
CviAII	CATG	3 cut(s)	229, 460, 504
DdeI	CTNAG	1 cut(s)	58
DinI	GGCGCC	1 cut(s)	406
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
DrdI	GACNNNNNNGTC	2 cut(s)	293, 461
DseDI	GACNNNNNNGTC	2 cut(s)	293, 461
EaeI	YGGCCR	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	253
Eco47I	GGWCC	3 cut(s)	363, 463, 532
Eco57I	CTGAAG	2 cut(s)	60, 185
Eco72I	CACGTG	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	222
EcoT22I	ATGCAT	1 cut(s)	380
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	3 cut(s)	232, 463, 507
FaiI	YATR	5 cut(s)	137, 230, 368, 461, 505
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	3 cut(s)	228, 459, 503
FauI	CCCGC	1 cut(s)	534
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	5 cut(s)	46, 176, 210, 385, 492
FokI	GGATG	1 cut(s)	93
Fsp4HI	GCNGC	5 cut(s)	46, 176, 210, 385, 492
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	5 cut(s)	46, 176, 210, 385, 492
GsuI	CTGGAG	1 cut(s)	50
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	435
HapII	CCGG	6 cut(s)	306, 320, 326, 360, 425, 432
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	1 cut(s)	407
Hin1I	GRCGYC	2 cut(s)	387, 405
Hin1II	CATG	3 cut(s)	232, 463, 507
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HinfI	GANTC	1 cut(s)	193
HpaII	CCGG	6 cut(s)	306, 320, 326, 360, 425, 432
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	3 cut(s)	391, 466, 513
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	1 cut(s)	10
Hpy8I	GTNNAC	3 cut(s)	391, 466, 513
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	3 cut(s)	84, 153, 230
HpyCH4III	ACNGT	1 cut(s)	452
HpyCH4IV	ACGT	2 cut(s)	292, 393
HpyCH4V	TGCA	1 cut(s)	378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 384, 500
HpyF3I	CTNAG	1 cut(s)	58
HpySE526I	ACGT	2 cut(s)	292, 393
Hsp92I	GRCGYC	2 cut(s)	387, 405
Hsp92II	CATG	3 cut(s)	232, 463, 507
HspAI	GCGC	1 cut(s)	405
KasI	GGCGCC	1 cut(s)	404
KroI	GCCGGC	1 cut(s)	431
KroNI	GCCGGC	1 cut(s)	433
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	4 cut(s)	322, 328, 488, 538
Lsp1109I	GCAGC	3 cut(s)	57, 187, 196
LweI	GCATC	1 cut(s)	486
MaeII	ACGT	2 cut(s)	292, 393
MaeIII	GTNAC	4 cut(s)	163, 341, 398, 452
MalI	GATC	1 cut(s)	19
MbiI	CCGCTC	1 cut(s)	541
MboI	GATC	1 cut(s)	17
MboII	GAAGA	2 cut(s)	74, 436
MflI	RGATCY	1 cut(s)	17
Mly113I	GGCGCC	1 cut(s)	405
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	4 cut(s)	121, 192, 223, 279
Mph1103I	ATGCAT	1 cut(s)	380
MroNI	GCCGGC	1 cut(s)	431
MspI	CCGG	6 cut(s)	306, 320, 326, 360, 425, 432
MspR9I	CCNGG	3 cut(s)	307, 361, 536
Mva1269I	GAATGC	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	536
MvnI	CGCG	2 cut(s)	112, 253
MwoI	GCNNNNNNNGC	3 cut(s)	218, 384, 500
NaeI	GCCGGC	1 cut(s)	433
NarI	GGCGCC	1 cut(s)	405
NciI	CCSGG	2 cut(s)	307, 361
NdeII	GATC	1 cut(s)	17
NgoMIV	GCCGGC	1 cut(s)	431
NlaIII	CATG	3 cut(s)	232, 463, 507
NlaIV	GGNNCC	4 cut(s)	324, 364, 406, 490
NmuCI	GTSAC	2 cut(s)	341, 452
NsiI	ATGCAT	1 cut(s)	380
NspI	RCATGY	2 cut(s)	232, 507
PciI	ACATGT	1 cut(s)	228
PctI	GAATGC	1 cut(s)	380
PdiI	GCCGGC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	193
PflMI	CCANNNNNTGG	1 cut(s)	529
PfoI	TCCNGGA	2 cut(s)	359, 534
PkrI	GCNGC	5 cut(s)	47, 177, 211, 386, 493
PluTI	GGCGCC	1 cut(s)	408
PmaCI	CACGTG	1 cut(s)	293
PmlI	CACGTG	1 cut(s)	293
Ppu21I	YACGTR	1 cut(s)	293
PscI	ACATGT	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	534
PspCI	CACGTG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	4 cut(s)	324, 364, 406, 490
PspPI	GGNCC	3 cut(s)	363, 463, 532
PsuI	RGATCY	1 cut(s)	17
SatI	GCNGC	5 cut(s)	46, 176, 210, 385, 492
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	3 cut(s)	363, 463, 532
ScrFI	CCNGG	3 cut(s)	307, 361, 536
SetI	ASST	8 cut(s)	64, 145, 184, 211, 241, 295, 396, 500
SfaNI	GCATC	1 cut(s)	486
SfoI	GGCGCC	1 cut(s)	406
SinI	GGWCC	3 cut(s)	363, 463, 532
SsiI	CCGC	6 cut(s)	110, 219, 282, 384, 492, 541
SspDI	GGCGCC	1 cut(s)	404
StyD4I	CCNGG	3 cut(s)	305, 359, 534
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	452
TaiI	ACGT	2 cut(s)	295, 396
TaqI	TCGA	1 cut(s)	447
TauI	GCSGC	2 cut(s)	387, 494
TfiI	GAWTC	1 cut(s)	193
TscAI	CASTG	2 cut(s)	194, 520
TseFI	GTSAC	2 cut(s)	341, 452
TseI	GCWGC	3 cut(s)	45, 175, 209
Tsp45I	GTSAC	2 cut(s)	341, 452
TspGWI	ACGGA	3 cut(s)	329, 386, 501
TspRI	CASTG	2 cut(s)	194, 520
Van91I	CCANNNNNTGG	1 cut(s)	529
VpaK11BI	GGWCC	3 cut(s)	363, 463, 532
XceI	RCATGY	2 cut(s)	232, 507
XmiI	GTMKAC	1 cut(s)	390
Zsp2I	ATGCAT	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.