Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0013872

Physical Location & Seq

Genomic Coordinates Forward (+)

9767790 .. 9770852

Gene Structure 3063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG107500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2145 bp

ATGTTCTGTCTGCCTCACAACCCATATACAAAAATACATGTATTTTTCTTTTTGTTTGGAGGCCTCAAGTCTCGAATGTCAATCCCCTATGCCCTTTCCACCAATCCACTACGTGGTCTTCTCTTAGACGGTCTGACGTGGACTCGACCTCCACCTCCACACTCCCCCAACTCTATTTATACTCCATTTTCTCTCTTTCTTTCTCCCCAAATCTCACTCACTCACTCTCTCTCTCTCTCTCTGGGCTCTTTGCCTTCAAAGAAATCAAAAATTTCAGTGAGGCAAATTAAACACACAAAAGACCTTGCGTGCGTACACCAAAACACACTAGCTATGGCTACTCCTTCGAATAGTTGGGCTCACACAGCCCAAATACAACACCACCTTTCTTCCCCCTCCTTTTTTTCTTCACTAGTAAACATGGGCTTCCCGACAAGATCCATCGCCTTGAACAGAAATAGAAGCAGCACCATTCACTCAGCTCTCCAGTCTCCTTCAGTTCTTCACTTCCCAAAACAGCCCTACCATCCGCGAGTTATTACCAAAGAGGCAACTATAACACCTTCTCCAAAGCCTAAAAAAGTAACTACAACGCAGCAACCTCCACACTGGAATCTGCTTCAGAGAGCTGCCTCCACCGCCTTGGACATGTTGGAAGGTGCTTTGGTCTCGCGTGAGAGCCAAAACCCTCTCCCCAAAACCGCCGACCCACGTGTCCAAATCGCCGGGAACTTCTCTCCGGTGCCGGAGCAACCCGTCCGTCACTCATTGCCCGTATCCGGGACCATACCCGAATGCATTAGCGGCGTCTACGTCCGTAACGGCGCCAACCCCTTACACGAGCCGGTCGCCGGCCACCACTTCTTCGACGGTGACGGCATGGTCCACGCCGTCAGCATCAATGACGGAGCCGCCAGCTACGCATGTCGGTTCACTGAAACCCAAAGACTGGTCCAGGAGCGGGAAATCGGGCGACCCGTTTTCCCAAAAGCCATAGGCGAGCTCCACGGCCACTCCGGCATCGCCCGCCTCGCCTTGTTTTACGCGCGCGGCGCTTTGGGCCTCGTGGACCCCAGCCACGGCATCGGAGTGGCCAACGCCGGCTTAGTCTATTTCAACGACCGCCTCTTGGCCATGTCCGAGGACGACATGCCGTACCAAGTGCGGATCACTCCCTCCGGCGACCTCGAAACAGTGGGCCGCTACGACTTCGAAACCCAACTGGGGTCCACAATGATCGCCCACCCGAAAGTCGACCCGGTGTCCGGCCACCTCCACACGCTCAGCTACGACGTCGTGAAGAGGCCTTACCTGAAATACTTCCAATTCTCCGCCGACGGGGAGAAGTCTCCGGACGTGGAAATCCCTCTGGCGGCGCCCACAATGATGCACGACTTCGCCATCACGGAAAACTTCGTCGTGATTCCCGACCAGCAGGTGGTGTTCAAGCTGCAGGAGATGATCACCGGCGGGTCGCCGGTGATCTACGACAAGAACAAGAAATCCAGGTTCGGAATTCTGGCCAAAAATGCCACAAACGCTGACGACATAATTTGGGTTGAATGCCCGGACACTTTCTGCTTCCACTTGTGGAATGCGTGGGAGGAGCCTGAGTCCGATGAGGTGGTTGTGATCGGGTCATGCATGACTCCACCGGACTCGATATTTAATGAGAATGACGAGTGCTTGAAGAGTGTGTTGTCCGAAATCCGGCTCAATGTGAAAACCGGCGAGTCGACTCGGAGGCCGATTATTTCGGAGCATGTGAACTTGGAGGCCGGAATGGTGAATCGGAACCGGCTCGGGAGAAAGACTCGGTATGCTTATCTCGCCATTGCTGAACCGTGGCCAAAAGTTTCTGGTTTCGCCAAGGTGGATCTTTTTACTGGCCAAGTAAAAAAGCATATTTACGGGGACAGGAAGTTTGGTGGTGAGCCCTTCTTTCTTCCTTCGGGTTCATGTGGGGAAGAAGATGGTGGGTATATTCTGAGCTTTGTTCACGACGAGAAGACGTGGAAGTCGGAGCTTCAGATTGTGAATGCCATGGATTTGAAGCTGGAAGCCACTGTGACGCTGCCGTCAAGAGTTCCGTATGGATTTCACGGCACGTTCGTAGACTCGAAGGACTTGAAAAACCAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009687 GO:0009688 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010431 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

714

Amino Acids

79.09

Weight (kDa)

7.72

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	248 - 706	4.7e-128	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30100 AT4G18350
fragaria_vesca	FvH4_3g05440
malus_domestica	MD05G1282700.v1.1 MD10G1261000.v1.1
prunus_persica	Prupe.4G082000_v2.0.a1
pyrus_communis	pycom05g26210
rosa_chinensis	RchiOBHm_Chr5g0014331
rosa_laevigata	RLG00000032098
rosa_multiflora	Rmu_co8232887.1_g000001 Rmu_sc0009295.1_g000002
rosa_rugosa	Rorug05G0017400
rosa_samantha	Rh5AG111500 Rh5BG108800 Rh5CG120500 Rh5DG107500
rosa_wichuraiana	Rw5G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1426
AasI	GACNNNNNNGTC	4 cut(s)	713, 881, 2017, 2077
AatII	GACGTC	1 cut(s)	1296
Acc36I	ACCTGC	1 cut(s)	1426
AccB1I	GGYRCC	3 cut(s)	742, 824, 1375
AccB7I	CCANNNNNTGG	3 cut(s)	113, 949, 1438
AccBSI	CCGCTC	1 cut(s)	961
AccI	GTMKAC	4 cut(s)	810, 1254, 1736, 2115
AccII	CGCG	5 cut(s)	532, 673, 1046, 1048, 1050
AccIII	TCCGGA	1 cut(s)	1351
AclWI	GGATC	3 cut(s)	432, 1175, 1884
AcoI	YGGCCR	8 cut(s)	853, 1009, 1092, 1131, 1267, 1521, 1847, 1888
AcsI	RAATTY	2 cut(s)	270, 1515
AcuI	CTGAAG	3 cut(s)	480, 605, 2012
AcvI	CACGTG	1 cut(s)	713
AcyI	GRCGYC	4 cut(s)	807, 825, 1293, 1376
AdeI	CACNNNGTG	1 cut(s)	113
AfaI	GTAC	2 cut(s)	315, 1157
AflIII	ACRYGT	3 cut(s)	37, 648, 712
AgsI	TTSAA	8 cut(s)	258, 451, 1117, 1447, 1562, 1690, 2053, 2131
AhdI	GACNNNNNGTC	1 cut(s)	1261
AhlI	ACTAGT	1 cut(s)	412
AjiI	CACGTC	3 cut(s)	138, 1357, 2013
AjnI	CCWGG	3 cut(s)	954, 1505, 2136
AloI	GAACNNNNNNTCC	2 cut(s)	1487, 1519
Alw21I	GWGCWC	1 cut(s)	1005
Alw26I	GTCTC	4 cut(s)	75, 495, 673, 1353
AlwI	GGATC	3 cut(s)	432, 1175, 1884
Ama87I	CYCGRG	1 cut(s)	1802
Aor13HI	TCCGGA	1 cut(s)	1351
ApeKI	GCWGC	5 cut(s)	465, 595, 629, 1450, 2074
ApoI	RAATTY	2 cut(s)	270, 1515
ArsI	GACNNNNNNTTYG	2 cut(s)	1907, 1939
Asp700I	GAANNNNTTC	1 cut(s)	1319
AspLEI	GCGC	5 cut(s)	827, 1048, 1050, 1055, 1378
AspS9I	GGNCC	7 cut(s)	783, 883, 952, 1060, 1069, 1198, 1227
AsuC2I	CCSGG	4 cut(s)	727, 781, 1259, 1568
AsuHPI	GGTGA	5 cut(s)	884, 1456, 1492, 1798, 1943
AsuII	TTCGAA	2 cut(s)	347, 1212
AvaI	CYCGRG	1 cut(s)	1802
AvaII	GGWCC	5 cut(s)	783, 883, 952, 1069, 1227
BalI	TGGCCA	5 cut(s)	1094, 1133, 1523, 1849, 1890
BanI	GGYRCC	3 cut(s)	742, 824, 1375
BanII	GRGCYC	4 cut(s)	248, 361, 1005, 1938
BarI	GAAGNNNNNNTAC	2 cut(s)	1292, 1324
BauI	CACGAG	2 cut(s)	839, 1064
BbrPI	CACGTG	1 cut(s)	713
BbsI	GAAGAC	2 cut(s)	110, 2015
Bbv12I	GWGCWC	1 cut(s)	1005
BbvI	GCAGC	5 cut(s)	477, 607, 616, 1437, 2061
BccI	CCATC	4 cut(s)	449, 534, 1409, 1967
BceAI	ACGGC	8 cut(s)	838, 875, 892, 1024, 1096, 1138, 2062, 2119
BciT130I	CCWGG	3 cut(s)	956, 1507, 2138
BciVI	GTATCC	1 cut(s)	787
BclI	TGATCA	1 cut(s)	1461
BcnI	CCSGG	4 cut(s)	727, 781, 1259, 1568
BcoDI	GTCTC	4 cut(s)	75, 495, 673, 1353
BcuI	ACTAGT	1 cut(s)	412
BfaI	CTAG	2 cut(s)	329, 413
BfmI	CTRYAG	1 cut(s)	1451
BfoI	RGCGCY	3 cut(s)	828, 1056, 1379
BfuAI	ACCTGC	1 cut(s)	1426
BfuI	GTATCC	1 cut(s)	787
BglI	GCCNNNNNGGC	1 cut(s)	1017
BlpI	GCTNAGC	1 cut(s)	1283
Bme1390I	CCNGG	7 cut(s)	727, 781, 956, 1259, 1507, 1568, 2138
Bme18I	GGWCC	5 cut(s)	783, 883, 952, 1069, 1227
BmeRI	GACNNNNNGTC	1 cut(s)	1261
BmeT110I	CYCGRG	1 cut(s)	1802
BmgBI	CACGTC	3 cut(s)	138, 1357, 2013
BmgT120I	GGNCC	7 cut(s)	783, 883, 952, 1060, 1069, 1198, 1227
BmiI	GGNNCC	9 cut(s)	744, 784, 826, 910, 1071, 1228, 1377, 1608, 1796
BmrFI	CCNGG	7 cut(s)	727, 781, 956, 1259, 1507, 1568, 2138
BmrI	ACTGGG	1 cut(s)	1232
BmsI	GCATC	4 cut(s)	906, 1029, 1092, 1377
BmuI	ACTGGG	1 cut(s)	1232
BpiI	GAAGAC	2 cut(s)	110, 2015
BplI	GAGNNNNNCTC	2 cut(s)	1798, 1830
BpmI	CTGGAG	1 cut(s)	470
Bpu1102I	GCTNAGC	1 cut(s)	1283
Bpu14I	TTCGAA	2 cut(s)	347, 1212
BpuEI	CTTGAG	1 cut(s)	50
BpuMI	CCSGG	4 cut(s)	727, 781, 1259, 1568
BsaAI	YACGTR	2 cut(s)	113, 713
BsaHI	GRCGYC	4 cut(s)	807, 825, 1293, 1376
BsaI	GGTCTC	1 cut(s)	673
BsaJI	CCNNGG	7 cut(s)	642, 1006, 1078, 1140, 1844, 1869, 2043
BsaWI	WCCGGW	3 cut(s)	739, 1351, 1654
BsaXI	ACNNNNNCTCC	8 cut(s)	133, 163, 550, 580, 998, 1028, 1598, 1628
Bse118I	RCCGGY	7 cut(s)	844, 851, 1100, 1466, 1477, 1727, 1797
Bse1I	ACTGG	5 cut(s)	487, 614, 954, 1227, 1891
Bse3DI	GCAATG	2 cut(s)	767, 1833
BseAI	TCCGGA	1 cut(s)	1351
BseBI	CCWGG	3 cut(s)	956, 1507, 2138
BseDI	CCNNGG	7 cut(s)	642, 1006, 1078, 1140, 1844, 1869, 2043
BseGI	GGATG	1 cut(s)	526
BseMI	GCAATG	2 cut(s)	767, 1833
BseMII	CTCAG	4 cut(s)	492, 1297, 1602, 1979
BseNI	ACTGG	5 cut(s)	487, 614, 954, 1227, 1891
BsePI	GCGCGC	1 cut(s)	1046
BseRI	GAGGAG	1 cut(s)	1619
BseXI	GCAGC	5 cut(s)	477, 607, 616, 1437, 2061
BseYI	CCCAGC	1 cut(s)	1073
Bsh1236I	CGCG	5 cut(s)	532, 673, 1046, 1048, 1050
Bsh1285I	CGRYCG	2 cut(s)	849, 1123
BshNI	GGYRCC	3 cut(s)	742, 824, 1375
BsiEI	CGRYCG	2 cut(s)	849, 1123
BsiHKAI	GWGCWC	1 cut(s)	1005
BsiHKCI	CYCGRG	1 cut(s)	1802
BslFI	GGGAC	2 cut(s)	796, 1928
BsmAI	GTCTC	4 cut(s)	75, 495, 673, 1353
BsmFI	GGGAC	2 cut(s)	796, 1928
BsmI	GAATGC	4 cut(s)	800, 1568, 1600, 2044
Bso31I	GGTCTC	1 cut(s)	673
BsoBI	CYCGRG	1 cut(s)	1802
Bsp119I	TTCGAA	2 cut(s)	347, 1212
Bsp1286I	GDGCHC	4 cut(s)	248, 361, 1005, 1938
Bsp13I	TCCGGA	1 cut(s)	1351
Bsp143I	GATC	7 cut(s)	437, 1167, 1236, 1461, 1482, 1632, 1876
Bsp1720I	GCTNAGC	1 cut(s)	1283
Bsp19I	CCATGG	1 cut(s)	2043
BspCNI	CTCAG	4 cut(s)	491, 1296, 1603, 1980
BspEI	TCCGGA	1 cut(s)	1351
BspFNI	CGCG	5 cut(s)	532, 673, 1046, 1048, 1050
BspLI	GGNNCC	9 cut(s)	744, 784, 826, 910, 1071, 1228, 1377, 1608, 1796
BspMAI	CTGCAG	1 cut(s)	1455
BspMI	ACCTGC	1 cut(s)	1426
BspPI	GGATC	3 cut(s)	432, 1175, 1884
BspT104I	TTCGAA	2 cut(s)	347, 1212
BspT107I	GGYRCC	3 cut(s)	742, 824, 1375
BspTNI	GGTCTC	1 cut(s)	673
BsrBI	CCGCTC	1 cut(s)	961
BsrDI	GCAATG	2 cut(s)	767, 1833
BsrFI	RCCGGY	7 cut(s)	844, 851, 1100, 1466, 1477, 1727, 1797
BsrI	ACTGG	5 cut(s)	487, 614, 954, 1227, 1891
BssAI	RCCGGY	7 cut(s)	844, 851, 1100, 1466, 1477, 1727, 1797
BssECI	CCNNGG	7 cut(s)	642, 1006, 1078, 1140, 1844, 1869, 2043
BssHII	GCGCGC	1 cut(s)	1046
BssMI	GATC	7 cut(s)	437, 1167, 1236, 1461, 1482, 1632, 1876
BssNI	GRCGYC	4 cut(s)	807, 825, 1293, 1376
BssSI	CACGAG	2 cut(s)	839, 1064
BssT1I	CCWWGG	3 cut(s)	642, 1869, 2043
Bst2BI	CACGAG	2 cut(s)	839, 1064
Bst2UI	CCWGG	3 cut(s)	956, 1507, 2138
Bst4CI	ACNGT	5 cut(s)	131, 872, 1195, 1845, 2068
Bst6I	CTCTTC	2 cut(s)	1295, 1685
BstACI	GRCGYC	4 cut(s)	807, 825, 1293, 1376
BstBAI	YACGTR	2 cut(s)	113, 713
BstBI	TTCGAA	2 cut(s)	347, 1212
BstC8I	GCNNGC	7 cut(s)	310, 853, 916, 1001, 1027, 1048, 1102
BstDEI	CTNAG	6 cut(s)	124, 478, 1105, 1283, 1611, 1988
BstDSI	CCRYGG	4 cut(s)	1006, 1078, 1844, 2043
BstF5I	GGATG	1 cut(s)	526
BstFNI	CGCG	5 cut(s)	532, 673, 1046, 1048, 1050
BstH2I	RGCGCY	3 cut(s)	828, 1056, 1379
BstHHI	GCGC	5 cut(s)	827, 1048, 1050, 1055, 1378
BstKTI	GATC	7 cut(s)	440, 1170, 1239, 1464, 1485, 1635, 1879
BstMAI	GTCTC	4 cut(s)	75, 495, 673, 1353
BstMBI	GATC	7 cut(s)	437, 1167, 1236, 1461, 1482, 1632, 1876
BstMCI	CGRYCG	2 cut(s)	849, 1123
BstNI	CCWGG	3 cut(s)	956, 1507, 2138
BstNSI	RCATGY	5 cut(s)	41, 652, 927, 1153, 1766
BstSCI	CCNGG	7 cut(s)	725, 779, 954, 1257, 1505, 1566, 2136
BstSFI	CTRYAG	1 cut(s)	1451
BstUI	CGCG	5 cut(s)	532, 673, 1046, 1048, 1050
BstV1I	GCAGC	5 cut(s)	477, 607, 616, 1437, 2061
BstV2I	GAAGAC	2 cut(s)	110, 2015
BstX2I	RGATCY	2 cut(s)	437, 1876
BstXI	CCANNNNNNTGG	1 cut(s)	643
BstYI	RGATCY	2 cut(s)	437, 1876
BsuI	GTATCC	1 cut(s)	787
BtgI	CCRYGG	4 cut(s)	1006, 1078, 1844, 2043
BtgZI	GCGATG	2 cut(s)	427, 1006
BtrI	CACGTC	3 cut(s)	138, 1357, 2013
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	5 cut(s)	282, 607, 933, 1200, 2064
BveI	ACCTGC	1 cut(s)	1426
Cac8I	GCNNGC	7 cut(s)	310, 853, 916, 1001, 1027, 1048, 1102
CfoI	GCGC	5 cut(s)	827, 1048, 1050, 1055, 1378
Cfr10I	RCCGGY	7 cut(s)	844, 851, 1100, 1466, 1477, 1727, 1797
Cfr13I	GGNCC	7 cut(s)	783, 883, 952, 1060, 1069, 1198, 1227
CseI	GACGC	2 cut(s)	796, 2080
Csp6I	GTAC	2 cut(s)	314, 1156
CviQI	GTAC	2 cut(s)	314, 1156
DdeI	CTNAG	6 cut(s)	124, 478, 1105, 1283, 1611, 1988
DinI	GGCGCC	2 cut(s)	826, 1377
DpnI	GATC	7 cut(s)	439, 1169, 1238, 1463, 1484, 1634, 1878
DpnII	GATC	7 cut(s)	437, 1167, 1236, 1461, 1482, 1632, 1876
DraIII	CACNNNGTG	1 cut(s)	113
DrdI	GACNNNNNNGTC	4 cut(s)	713, 881, 2017, 2077
DriI	GACNNNNNGTC	1 cut(s)	1261
DseDI	GACNNNNNNGTC	4 cut(s)	713, 881, 2017, 2077
EaeI	YGGCCR	8 cut(s)	853, 1009, 1092, 1131, 1267, 1521, 1847, 1888
Eam1104I	CTCTTC	2 cut(s)	1295, 1685
Eam1105I	GACNNNNNGTC	1 cut(s)	1261
EarI	CTCTTC	2 cut(s)	1295, 1685
EciI	GGCGGA	1 cut(s)	1321
Ecl136II	GAGCTC	1 cut(s)	1003
Eco130I	CCWWGG	3 cut(s)	642, 1869, 2043
Eco147I	AGGCCT	2 cut(s)	63, 1306
Eco24I	GRGCYC	4 cut(s)	248, 361, 1005, 1938
Eco31I	GGTCTC	1 cut(s)	673
Eco47I	GGWCC	5 cut(s)	783, 883, 952, 1069, 1227
Eco53kI	GAGCTC	1 cut(s)	1003
Eco57I	CTGAAG	3 cut(s)	480, 605, 2012
Eco72I	CACGTG	1 cut(s)	713
Eco88I	CYCGRG	1 cut(s)	1802
EcoICRI	GAGCTC	1 cut(s)	1003
EcoRI	GAATTC	1 cut(s)	1515
EcoRII	CCWGG	3 cut(s)	954, 1505, 2136
EcoT14I	CCWWGG	3 cut(s)	642, 1869, 2043
EcoT22I	ATGCAT	2 cut(s)	800, 1646
EcoT38I	GRGCYC	4 cut(s)	248, 361, 1005, 1938
EgeI	GGCGCC	2 cut(s)	826, 1377
EheI	GGCGCC	2 cut(s)	826, 1377
ErhI	CCWWGG	3 cut(s)	642, 1869, 2043
FaqI	GGGAC	2 cut(s)	796, 1928
FauI	CCCGC	3 cut(s)	954, 1034, 1463
FbaI	TGATCA	1 cut(s)	1461
FblI	GTMKAC	4 cut(s)	810, 1254, 1736, 2115
FokI	GGATG	1 cut(s)	513
FriOI	GRGCYC	4 cut(s)	248, 361, 1005, 1938
FspBI	CTAG	2 cut(s)	329, 413
GlaI	GCGC	5 cut(s)	826, 1047, 1049, 1054, 1377
GsaI	CCCAGC	1 cut(s)	1077
GsuI	CTGGAG	1 cut(s)	470
HaeII	RGCGCY	3 cut(s)	828, 1056, 1379
HgaI	GACGC	2 cut(s)	796, 2080
HhaI	GCGC	5 cut(s)	827, 1048, 1050, 1055, 1378
Hin1I	GRCGYC	4 cut(s)	807, 825, 1293, 1376
Hin6I	GCGC	5 cut(s)	825, 1046, 1048, 1053, 1376
HinP1I	GCGC	5 cut(s)	825, 1046, 1048, 1053, 1376
HincII	GTYRAC	2 cut(s)	1255, 1737
HindII	GTYRAC	2 cut(s)	1255, 1737
HphI	GGTGA	5 cut(s)	884, 1456, 1492, 1798, 1943
Hpy188III	TCNNGA	9 cut(s)	72, 430, 1297, 1352, 1420, 1427, 1804, 2000, 2082
Hpy99I	CGWCG	6 cut(s)	872, 1295, 1298, 1340, 1421, 2006
HpyAV	CCTTC	8 cut(s)	264, 354, 504, 573, 650, 1948, 1959, 2116
HpyCH4III	ACNGT	5 cut(s)	131, 872, 1195, 1845, 2068
HpyCH4IV	ACGT	8 cut(s)	112, 137, 712, 813, 1293, 1356, 2012, 2108
HpyCH4V	TGCA	4 cut(s)	798, 1390, 1453, 1644
HpyF3I	CTNAG	6 cut(s)	124, 478, 1105, 1283, 1611, 1988
HpySE526I	ACGT	8 cut(s)	112, 137, 712, 813, 1293, 1356, 2012, 2108
Hsp92I	GRCGYC	4 cut(s)	807, 825, 1293, 1376
HspAI	GCGC	5 cut(s)	825, 1046, 1048, 1053, 1376
KasI	GGCGCC	2 cut(s)	824, 1375
Kpn2I	TCCGGA	1 cut(s)	1351
KroI	GCCGGC	2 cut(s)	851, 1100
KroNI	GCCGGC	2 cut(s)	853, 1102
Ksp22I	TGATCA	1 cut(s)	1461
Kzo9I	GATC	7 cut(s)	437, 1167, 1236, 1461, 1482, 1632, 1876
LmnI	GCTCC	7 cut(s)	748, 908, 958, 1008, 1606, 1759, 2023
Lsp1109I	GCAGC	5 cut(s)	477, 607, 616, 1437, 2061
LweI	GCATC	4 cut(s)	906, 1029, 1092, 1377
MaeI	CTAG	2 cut(s)	329, 413
MaeII	ACGT	8 cut(s)	112, 137, 712, 813, 1293, 1356, 2012, 2108
MaeIII	GTNAC	5 cut(s)	583, 761, 818, 872, 2068
MalI	GATC	7 cut(s)	439, 1169, 1238, 1463, 1484, 1634, 1878
MauBI	CGCGCGCG	1 cut(s)	1046
MbiI	CCGCTC	1 cut(s)	961
MboI	GATC	7 cut(s)	437, 1167, 1236, 1461, 1482, 1632, 1876
MflI	RGATCY	2 cut(s)	437, 1876
MhlI	GDGCHC	4 cut(s)	248, 361, 1005, 1938
MlsI	TGGCCA	5 cut(s)	1094, 1133, 1523, 1849, 1890
MluCI	AATT	5 cut(s)	270, 285, 1325, 1515, 1551
MluNI	TGGCCA	5 cut(s)	1094, 1133, 1523, 1849, 1890
Mly113I	GGCGCC	2 cut(s)	825, 1376
MlyI	GAGTC	8 cut(s)	136, 1622, 1642, 1652, 1732, 1742, 1807, 2111
MmeI	TCCRAC	2 cut(s)	633, 2001
Mox20I	TGGCCA	5 cut(s)	1094, 1133, 1523, 1849, 1890
Mph1103I	ATGCAT	2 cut(s)	800, 1646
MroI	TCCGGA	1 cut(s)	1351
MroNI	GCCGGC	2 cut(s)	851, 1100
MroXI	GAANNNNTTC	1 cut(s)	1319
MscI	TGGCCA	5 cut(s)	1094, 1133, 1523, 1849, 1890
MseI	TTAA	2 cut(s)	288, 1668
MslI	CAYNNNNRTG	2 cut(s)	1088, 1385
Msp20I	TGGCCA	5 cut(s)	1094, 1133, 1523, 1849, 1890
MspR9I	CCNGG	7 cut(s)	727, 781, 956, 1259, 1507, 1568, 2138
MteI	GCGCNGCGC	1 cut(s)	1051
Mva1269I	GAATGC	4 cut(s)	800, 1568, 1600, 2044
MvaI	CCWGG	3 cut(s)	956, 1507, 2138
MvnI	CGCG	5 cut(s)	532, 673, 1046, 1048, 1050
NaeI	GCCGGC	2 cut(s)	853, 1102
NarI	GGCGCC	2 cut(s)	825, 1376
NciI	CCSGG	4 cut(s)	727, 781, 1259, 1568
NcoI	CCATGG	1 cut(s)	2043
NdeII	GATC	7 cut(s)	437, 1167, 1236, 1461, 1482, 1632, 1876
NgoMIV	GCCGGC	2 cut(s)	851, 1100
NlaIV	GGNNCC	9 cut(s)	744, 784, 826, 910, 1071, 1228, 1377, 1608, 1796
NmuCI	GTSAC	3 cut(s)	761, 872, 2068
NsiI	ATGCAT	2 cut(s)	800, 1646
NspI	RCATGY	5 cut(s)	41, 652, 927, 1153, 1766
NspV	TTCGAA	2 cut(s)	347, 1212
PaqCI	CACCTGC	1 cut(s)	1426
PauI	GCGCGC	1 cut(s)	1046
PceI	AGGCCT	2 cut(s)	63, 1306
PciI	ACATGT	2 cut(s)	37, 648
PcsI	WCGNNNNNNNCGW	3 cut(s)	975, 1425, 2109
PctI	GAATGC	4 cut(s)	800, 1568, 1600, 2044
PdiI	GCCGGC	2 cut(s)	853, 1102
PdmI	GAANNNNTTC	1 cut(s)	1319
PfeI	GAWTC	3 cut(s)	613, 1423, 1789
PflMI	CCANNNNNTGG	3 cut(s)	113, 949, 1438
PfoI	TCCNGGA	2 cut(s)	779, 954
PleI	GAGTC	8 cut(s)	136, 1621, 1642, 1652, 1732, 1741, 1807, 2111
PluTI	GGCGCC	2 cut(s)	828, 1379
PmaCI	CACGTG	1 cut(s)	713
PmlI	CACGTG	1 cut(s)	713
PpsI	GAGTC	8 cut(s)	136, 1621, 1642, 1652, 1732, 1741, 1807, 2111
Ppu21I	YACGTR	2 cut(s)	113, 713
PscI	ACATGT	2 cut(s)	37, 648
Psp124BI	GAGCTC	1 cut(s)	1005
Psp6I	CCWGG	3 cut(s)	954, 1505, 2136
PspCI	CACGTG	1 cut(s)	713
PspFI	CCCAGC	1 cut(s)	1073
PspGI	CCWGG	3 cut(s)	954, 1505, 2136
PspN4I	GGNNCC	9 cut(s)	744, 784, 826, 910, 1071, 1228, 1377, 1608, 1796
PspPI	GGNCC	7 cut(s)	783, 883, 952, 1060, 1069, 1198, 1227
PstI	CTGCAG	1 cut(s)	1455
PsuI	RGATCY	2 cut(s)	437, 1876
PteI	GCGCGC	1 cut(s)	1046
RsaI	GTAC	2 cut(s)	315, 1157
RsaNI	GTAC	2 cut(s)	314, 1156
RseI	CAYNNNNRTG	2 cut(s)	1088, 1385
SacI	GAGCTC	1 cut(s)	1005
SalI	GTCGAC	2 cut(s)	1253, 1735
SaqAI	TTAA	2 cut(s)	288, 1668
Sau3AI	GATC	7 cut(s)	437, 1167, 1236, 1461, 1482, 1632, 1876
Sau96I	GGNCC	7 cut(s)	783, 883, 952, 1060, 1069, 1198, 1227
SchI	GAGTC	8 cut(s)	136, 1622, 1642, 1652, 1732, 1742, 1807, 2111
ScrFI	CCNGG	7 cut(s)	727, 781, 956, 1259, 1507, 1568, 2138
SduI	GDGCHC	4 cut(s)	248, 361, 1005, 1938
SfaNI	GCATC	4 cut(s)	906, 1029, 1092, 1377
SfcI	CTRYAG	1 cut(s)	1451
SfoI	GGCGCC	2 cut(s)	826, 1377
SfuI	TTCGAA	2 cut(s)	347, 1212
SgrAI	CRCCGGYG	2 cut(s)	1466, 1477
SinI	GGWCC	5 cut(s)	783, 883, 952, 1069, 1227
SmiMI	CAYNNNNRTG	2 cut(s)	1088, 1385
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SpeI	ACTAGT	1 cut(s)	412
Sse9I	AATT	5 cut(s)	270, 285, 1325, 1515, 1551
SseBI	AGGCCT	2 cut(s)	63, 1306
SspDI	GGCGCC	2 cut(s)	824, 1375
SspMI	CTAG	2 cut(s)	329, 413
SstI	GAGCTC	1 cut(s)	1005
StuI	AGGCCT	2 cut(s)	63, 1306
StyD4I	CCNGG	7 cut(s)	725, 779, 954, 1257, 1505, 1566, 2136
StyI	CCWWGG	3 cut(s)	642, 1869, 2043
TaaI	ACNGT	5 cut(s)	131, 872, 1195, 1845, 2068
TaiI	ACGT	8 cut(s)	115, 140, 715, 816, 1296, 1359, 2015, 2111
TasI	AATT	5 cut(s)	270, 285, 1325, 1515, 1551
TauI	GCSGC	5 cut(s)	807, 914, 1053, 1203, 1376
TfiI	GAWTC	3 cut(s)	613, 1423, 1789
Tru1I	TTAA	2 cut(s)	288, 1668
Tru9I	TTAA	2 cut(s)	288, 1668
TscAI	CASTG	5 cut(s)	282, 614, 940, 1200, 2071
TseFI	GTSAC	3 cut(s)	761, 872, 2068
TseI	GCWGC	5 cut(s)	465, 595, 629, 1450, 2074
Tsp45I	GTSAC	3 cut(s)	761, 872, 2068
TspDTI	ATGAA	1 cut(s)	1947
TspGWI	ACGGA	5 cut(s)	749, 806, 921, 1421, 2079
TspRI	CASTG	5 cut(s)	282, 614, 940, 1200, 2071
Van91I	CCANNNNNTGG	3 cut(s)	113, 949, 1438
VpaK11BI	GGWCC	5 cut(s)	783, 883, 952, 1069, 1227
XapI	RAATTY	2 cut(s)	270, 1515
XceI	RCATGY	5 cut(s)	41, 652, 927, 1153, 1766
XmiI	GTMKAC	4 cut(s)	810, 1254, 1736, 2115
XmnI	GAANNNNTTC	1 cut(s)	1319
XspI	CTAG	2 cut(s)	329, 413
ZraI	GACGTC	1 cut(s)	1294
Zsp2I	ATGCAT	2 cut(s)	800, 1646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.