Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013872

Physical Location & Seq

Genomic Coordinates Forward (+)

9810067 .. 9812403

Gene Structure 2337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29478

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2067 bp

ATGTCAATCCCCAATGCCCTTTCCACCAATCCACTACGTGGTCTTCTCTTAGACGGTCTGACGTGGACTCGACCTCCACACTCCCCCAACTCTATTTATACTCCATTTTCTCTCTTTCTTTCTCCCCAAATCTCACTCACTCACTCTCTCTCTCTGGGCTCTTTGCCTTCAAAGAAATCAAAAATTTCAGTGAGGCAAATTAAACACACAAAATACCTTGCGTGCATACACCAAAACACACTAGCTATGGCTACTCCTTCGAATAGTTGGGCTCACACAGCCCAAATACAACACCACCTTTCTTCCTCCTCCTCTTTTTCTTCACTAGTAAACATGGGCTTCCCGACAAGGTCCATCGCCTTGAACAGAAATAGAAGCAGCACCATTCACTCAGCTCTCCAGTCTCCTTCAGTTCTTCACTTCCCAAAACAGCCCTACCATCCGCGAGTTATTACCAAAGAGGCCACTATAACACCTTCTCCAACGCCTAAAACGGTAACTACAACGCAGCAACCTCCACACTGGAATTTGCTTCAGAGAGCTGCCTCCACCGCCTTGGACATGTTGGAAGGTGCTTTGGTCTCGCGTGAGAGCCAAAACCCCCTCCCCAAAACCGCCGACCCACGTGTCCAAATCGCAGGGAACTTCGCTCCGGTGCCGGAGCAACCCGTCCGTCACTCATTGCCCGTATCCGGGACCATACCCGAATGCATTAGCGGCGTCTACGTCCGTAACGGCGCGAACCCCTTACACGAGCCGGTCGCCGGCCACCACTTCTTCGACGGTGACGGCATGGTCCACGCCGTCAGCATAAATGACGGAGCCGCCAGCTACGCATGTCGGTTCACTGAAACCCAAAGACTGGTCCAGGAGCGGGAAATCGGGCGACCCGTTTTCCCAAAAGCCATAGGCGAGCTCCACGGCCACTCCGGCATCGCCCGCCTCGCCTTGTTTTACGCGCGCGGCGCTTTGGGCCTCGTGGACCCCAGCCACGGCATCGGAGTCGCCAACGCCGGCTTAGTCTATTTCAACGACCGCCTCCTGGCCATGTCAGAGGACGACATGCCGTACCAAGTGCGGATCACTCCCTCCGGCGACCTCGAAACAGTGGGCCGCTACGACTTCGAAACCCAACTCGGGTCCACAATGATCGCCCACCCGAAAGTCGACCCGGTGTCCGGCCACCTCCACACGCTCAGCTACGACGTCGTGAAGAGGCCTTACCTGAAATACTTCCAATTCTCCGCCGACGGGGAGAAGTCTCCGGACGTGGAAATCCCTCTGGCGGCGCCCACAATGATGCACGACTTCGCCATCACCGAAAACTTCGTCGTGATTCCCGACCAGCAGGTGGTGTTCAAGCTGCAGGAGATGATCACCGGCGGGTCGCCGGTGATCTACGACAAGAACAAGAAATCCAGGTTCGGAATTCTTGCGAAAAATGCCACAAACGCTGATGACATAATTTGGGTTGAATGCCCGGACACTTTCTGCTTCCACTTGTGGAATGCGTGGGAGGAGCCTGAGTCCGATGAGGTGGTTGTGATCGGGTCATGCATGACTCCACCGGACTCGATATTTAATGAGAATGACGAGTGCTTGAAGAGTGTGTTGTCCGAAATCCGGCTTAATTTGAAAACCGGCGAGTCGATTCGGAGGCCGATTATTTCGGATGAGTCGGAGCATGTGAACTTGGAGGCAGGAATGGTGAATCGGAACCGGCTCGGGAGAAAGACTCGGTATGCTTATCTCGCCATTGCTGAACCGTGGCCAAAAGTTTCTGGTTTCGCCAAGGTGGATCTTTTTACTGGCCAAGTAAAAAAGCATATTTACGGGGACAGGAAGTTTGGTGGTGAGCCCTTCTTTCTTCCTTCGGGTTCATGTGGGGAAGAAGATGGTGGGTATATCCTGAGCTTTGTTCACGACGAGAAGACGTGGAAGTCGGAGCTTCAGATTGTGAATGCCATGAATTTGAAGCTGGAAGCCACCGTGACGCTGCCGTCAAGAGTTCCGTATGGATTTCACGGCACGTTCATAGACTCCAAGGACTTGAAAAACCAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009687 GO:0009688 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010431 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

688

Amino Acids

75.95

Weight (kDa)

6.74

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	216 - 680	1.3e-127	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30100 AT4G18350
fragaria_vesca	FvH4_3g05440
malus_domestica	MD05G1282700.v1.1 MD10G1261000.v1.1
prunus_persica	Prupe.4G082000_v2.0.a1
pyrus_communis	pycom05g26210
rosa_chinensis	RchiOBHm_Chr5g0014331
rosa_laevigata	RLG00000032098
rosa_multiflora	Rmu_co8232887.1_g000001 Rmu_sc0009295.1_g000002
rosa_rugosa	Rorug05G0017400
rosa_samantha	Rh5AG111500 Rh5BG108800 Rh5CG120500 Rh5DG107500
rosa_wichuraiana	Rw5G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1339
AasI	GACNNNNNNGTC	4 cut(s)	626, 794, 1939, 1999
AatII	GACGTC	1 cut(s)	1209
Acc36I	ACCTGC	1 cut(s)	1339
AccB1I	GGYRCC	2 cut(s)	655, 1288
AccB7I	CCANNNNNTGG	3 cut(s)	38, 862, 1351
AccBSI	CCGCTC	1 cut(s)	874
AccI	GTMKAC	2 cut(s)	723, 1167
AccII	CGCG	6 cut(s)	445, 586, 740, 959, 961, 963
AccIII	TCCGGA	1 cut(s)	1264
AclWI	GGATC	2 cut(s)	1088, 1806
AcoI	YGGCCR	6 cut(s)	766, 922, 1044, 1180, 1769, 1810
AcsI	RAATTY	4 cut(s)	183, 526, 1428, 1969
AcuI	CTGAAG	3 cut(s)	393, 518, 1934
AcvI	CACGTG	1 cut(s)	626
AcyI	GRCGYC	3 cut(s)	720, 1206, 1289
AdeI	CACNNNGTG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	1070
AflIII	ACRYGT	2 cut(s)	561, 625
AgsI	TTSAA	9 cut(s)	171, 364, 1030, 1360, 1475, 1603, 1636, 1975, 2053
AhdI	GACNNNNNGTC	1 cut(s)	1174
AhlI	ACTAGT	1 cut(s)	325
AjiI	CACGTC	3 cut(s)	63, 1270, 1935
AjnI	CCWGG	4 cut(s)	867, 1041, 1418, 2058
AloI	GAACNNNNNNTCC	2 cut(s)	1400, 1432
Alw21I	GWGCWC	1 cut(s)	918
Alw26I	GTCTC	3 cut(s)	408, 586, 1266
AlwI	GGATC	2 cut(s)	1088, 1806
Ama87I	CYCGRG	2 cut(s)	1136, 1724
Aor13HI	TCCGGA	1 cut(s)	1264
ApeKI	GCWGC	5 cut(s)	378, 508, 542, 1363, 1996
ApoI	RAATTY	4 cut(s)	183, 526, 1428, 1969
ArsI	GACNNNNNNTTYG	4 cut(s)	1314, 1346, 1829, 1861
Asp700I	GAANNNNTTC	1 cut(s)	1232
AspLEI	GCGC	5 cut(s)	740, 961, 963, 968, 1291
AspS9I	GGNCC	8 cut(s)	351, 696, 796, 865, 973, 982, 1111, 1140
AsuC2I	CCSGG	3 cut(s)	694, 1172, 1481
AsuHPI	GGTGA	6 cut(s)	797, 1309, 1369, 1405, 1720, 1865
AsuII	TTCGAA	2 cut(s)	260, 1125
AvaI	CYCGRG	2 cut(s)	1136, 1724
AvaII	GGWCC	6 cut(s)	351, 696, 796, 865, 982, 1140
BalI	TGGCCA	3 cut(s)	1046, 1771, 1812
BanI	GGYRCC	2 cut(s)	655, 1288
BanII	GRGCYC	4 cut(s)	161, 274, 918, 1860
BarI	GAAGNNNNNNTAC	2 cut(s)	1205, 1237
BauI	CACGAG	2 cut(s)	752, 977
BbrPI	CACGTG	1 cut(s)	626
BbsI	GAAGAC	2 cut(s)	35, 1937
Bbv12I	GWGCWC	1 cut(s)	918
BbvI	GCAGC	5 cut(s)	390, 520, 529, 1350, 1983
BccI	CCATC	4 cut(s)	362, 447, 1322, 1889
BceAI	ACGGC	8 cut(s)	751, 788, 805, 937, 1009, 1051, 1984, 2041
BcgI	CGANNNNNNTGC	2 cut(s)	985, 1019
BciT130I	CCWGG	4 cut(s)	869, 1043, 1420, 2060
BciVI	GTATCC	1 cut(s)	700
BclI	TGATCA	1 cut(s)	1374
BcnI	CCSGG	3 cut(s)	694, 1172, 1481
BcoDI	GTCTC	3 cut(s)	408, 586, 1266
BcuI	ACTAGT	1 cut(s)	325
BfaI	CTAG	2 cut(s)	242, 326
BfmI	CTRYAG	1 cut(s)	1364
BfoI	RGCGCY	2 cut(s)	969, 1292
BfuAI	ACCTGC	1 cut(s)	1339
BfuI	GTATCC	1 cut(s)	700
BglI	GCCNNNNNGGC	1 cut(s)	930
BlpI	GCTNAGC	1 cut(s)	1196
Bme1390I	CCNGG	7 cut(s)	694, 869, 1043, 1172, 1420, 1481, 2060
Bme18I	GGWCC	6 cut(s)	351, 696, 796, 865, 982, 1140
BmeRI	GACNNNNNGTC	1 cut(s)	1174
BmeT110I	CYCGRG	2 cut(s)	1136, 1724
BmgBI	CACGTC	3 cut(s)	63, 1270, 1935
BmgT120I	GGNCC	8 cut(s)	351, 696, 796, 865, 973, 982, 1111, 1140
BmiI	GGNNCC	8 cut(s)	657, 697, 823, 984, 1141, 1290, 1521, 1718
BmrFI	CCNGG	7 cut(s)	694, 869, 1043, 1172, 1420, 1481, 2060
BmsI	GCATC	3 cut(s)	942, 1005, 1290
BpiI	GAAGAC	2 cut(s)	35, 1937
BplI	GAGNNNNNCTC	2 cut(s)	1720, 1752
BpmI	CTGGAG	1 cut(s)	383
Bpu10I	CCTNAGC	1 cut(s)	1910
Bpu1102I	GCTNAGC	1 cut(s)	1196
Bpu14I	TTCGAA	2 cut(s)	260, 1125
BpuMI	CCSGG	3 cut(s)	694, 1172, 1481
BsaAI	YACGTR	2 cut(s)	38, 626
BsaHI	GRCGYC	3 cut(s)	720, 1206, 1289
BsaI	GGTCTC	1 cut(s)	586
BsaJI	CCNNGG	6 cut(s)	555, 919, 991, 1766, 1791, 2043
BsaWI	WCCGGW	3 cut(s)	652, 1264, 1567
BsaXI	ACNNNNNCTCC	8 cut(s)	58, 88, 463, 493, 911, 941, 1511, 1541
Bse118I	RCCGGY	7 cut(s)	757, 764, 1013, 1379, 1390, 1640, 1719
Bse1I	ACTGG	4 cut(s)	400, 527, 867, 1813
Bse3DI	GCAATG	2 cut(s)	680, 1755
BseAI	TCCGGA	1 cut(s)	1264
BseBI	CCWGG	4 cut(s)	869, 1043, 1420, 2060
BseDI	CCNNGG	6 cut(s)	555, 919, 991, 1766, 1791, 2043
BseGI	GGATG	2 cut(s)	439, 1678
BseMI	GCAATG	2 cut(s)	680, 1755
BseMII	CTCAG	4 cut(s)	405, 1210, 1515, 1901
BseNI	ACTGG	4 cut(s)	400, 527, 867, 1813
BsePI	GCGCGC	1 cut(s)	959
BseRI	GAGGAG	3 cut(s)	298, 301, 1532
BseXI	GCAGC	5 cut(s)	390, 520, 529, 1350, 1983
BseYI	CCCAGC	1 cut(s)	986
Bsh1236I	CGCG	6 cut(s)	445, 586, 740, 959, 961, 963
Bsh1285I	CGRYCG	2 cut(s)	762, 1036
BshNI	GGYRCC	2 cut(s)	655, 1288
BsiEI	CGRYCG	2 cut(s)	762, 1036
BsiHKAI	GWGCWC	1 cut(s)	918
BsiHKCI	CYCGRG	2 cut(s)	1136, 1724
BslFI	GGGAC	2 cut(s)	709, 1850
BsmAI	GTCTC	3 cut(s)	408, 586, 1266
BsmFI	GGGAC	2 cut(s)	709, 1850
BsmI	GAATGC	4 cut(s)	713, 1481, 1513, 1966
Bso31I	GGTCTC	1 cut(s)	586
BsoBI	CYCGRG	2 cut(s)	1136, 1724
Bsp119I	TTCGAA	2 cut(s)	260, 1125
Bsp1286I	GDGCHC	4 cut(s)	161, 274, 918, 1860
Bsp13I	TCCGGA	1 cut(s)	1264
Bsp143I	GATC	6 cut(s)	1080, 1149, 1374, 1395, 1545, 1798
Bsp1720I	GCTNAGC	1 cut(s)	1196
BspCNI	CTCAG	4 cut(s)	404, 1209, 1516, 1902
BspEI	TCCGGA	1 cut(s)	1264
BspFNI	CGCG	6 cut(s)	445, 586, 740, 959, 961, 963
BspLI	GGNNCC	8 cut(s)	657, 697, 823, 984, 1141, 1290, 1521, 1718
BspMAI	CTGCAG	1 cut(s)	1368
BspMI	ACCTGC	1 cut(s)	1339
BspPI	GGATC	2 cut(s)	1088, 1806
BspT104I	TTCGAA	2 cut(s)	260, 1125
BspT107I	GGYRCC	2 cut(s)	655, 1288
BspTNI	GGTCTC	1 cut(s)	586
BsrBI	CCGCTC	1 cut(s)	874
BsrDI	GCAATG	2 cut(s)	680, 1755
BsrFI	RCCGGY	7 cut(s)	757, 764, 1013, 1379, 1390, 1640, 1719
BsrI	ACTGG	4 cut(s)	400, 527, 867, 1813
BssAI	RCCGGY	7 cut(s)	757, 764, 1013, 1379, 1390, 1640, 1719
BssECI	CCNNGG	6 cut(s)	555, 919, 991, 1766, 1791, 2043
BssHII	GCGCGC	1 cut(s)	959
BssMI	GATC	6 cut(s)	1080, 1149, 1374, 1395, 1545, 1798
BssNI	GRCGYC	3 cut(s)	720, 1206, 1289
BssSI	CACGAG	2 cut(s)	752, 977
BssT1I	CCWWGG	3 cut(s)	555, 1791, 2043
Bst2BI	CACGAG	2 cut(s)	752, 977
Bst2UI	CCWGG	4 cut(s)	869, 1043, 1420, 2060
Bst4CI	ACNGT	6 cut(s)	56, 496, 785, 1108, 1767, 1990
Bst6I	CTCTTC	2 cut(s)	1208, 1598
BstACI	GRCGYC	3 cut(s)	720, 1206, 1289
BstBAI	YACGTR	2 cut(s)	38, 626
BstBI	TTCGAA	2 cut(s)	260, 1125
BstC8I	GCNNGC	7 cut(s)	223, 766, 829, 914, 940, 961, 1015
BstDEI	CTNAG	6 cut(s)	49, 391, 1018, 1196, 1524, 1910
BstDSI	CCRYGG	3 cut(s)	919, 991, 1766
BstF5I	GGATG	2 cut(s)	439, 1678
BstFNI	CGCG	6 cut(s)	445, 586, 740, 959, 961, 963
BstH2I	RGCGCY	2 cut(s)	969, 1292
BstHHI	GCGC	5 cut(s)	740, 961, 963, 968, 1291
BstKTI	GATC	6 cut(s)	1083, 1152, 1377, 1398, 1548, 1801
BstMAI	GTCTC	3 cut(s)	408, 586, 1266
BstMBI	GATC	6 cut(s)	1080, 1149, 1374, 1395, 1545, 1798
BstMCI	CGRYCG	2 cut(s)	762, 1036
BstNI	CCWGG	4 cut(s)	869, 1043, 1420, 2060
BstNSI	RCATGY	4 cut(s)	565, 840, 1066, 1688
BstSCI	CCNGG	7 cut(s)	692, 867, 1041, 1170, 1418, 1479, 2058
BstSFI	CTRYAG	1 cut(s)	1364
BstUI	CGCG	6 cut(s)	445, 586, 740, 959, 961, 963
BstV1I	GCAGC	5 cut(s)	390, 520, 529, 1350, 1983
BstV2I	GAAGAC	2 cut(s)	35, 1937
BstX2I	RGATCY	1 cut(s)	1798
BstXI	CCANNNNNNTGG	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	1798
BsuI	GTATCC	1 cut(s)	700
BtgI	CCRYGG	3 cut(s)	919, 991, 1766
BtgZI	GCGATG	2 cut(s)	340, 919
BtrI	CACGTC	3 cut(s)	63, 1270, 1935
BtsCI	GGATG	2 cut(s)	439, 1678
BtsIMutI	CAGTG	4 cut(s)	195, 520, 846, 1113
BveI	ACCTGC	1 cut(s)	1339
Cac8I	GCNNGC	7 cut(s)	223, 766, 829, 914, 940, 961, 1015
CfoI	GCGC	5 cut(s)	740, 961, 963, 968, 1291
Cfr10I	RCCGGY	7 cut(s)	757, 764, 1013, 1379, 1390, 1640, 1719
Cfr13I	GGNCC	8 cut(s)	351, 696, 796, 865, 973, 982, 1111, 1140
CseI	GACGC	2 cut(s)	709, 2002
Csp6I	GTAC	1 cut(s)	1069
CviQI	GTAC	1 cut(s)	1069
DdeI	CTNAG	6 cut(s)	49, 391, 1018, 1196, 1524, 1910
DinI	GGCGCC	1 cut(s)	1290
DpnI	GATC	6 cut(s)	1082, 1151, 1376, 1397, 1547, 1800
DpnII	GATC	6 cut(s)	1080, 1149, 1374, 1395, 1545, 1798
DraIII	CACNNNGTG	1 cut(s)	38
DrdI	GACNNNNNNGTC	4 cut(s)	626, 794, 1939, 1999
DriI	GACNNNNNGTC	1 cut(s)	1174
DseDI	GACNNNNNNGTC	4 cut(s)	626, 794, 1939, 1999
EaeI	YGGCCR	6 cut(s)	766, 922, 1044, 1180, 1769, 1810
Eam1104I	CTCTTC	2 cut(s)	1208, 1598
Eam1105I	GACNNNNNGTC	1 cut(s)	1174
EarI	CTCTTC	2 cut(s)	1208, 1598
EciI	GGCGGA	1 cut(s)	1234
Ecl136II	GAGCTC	1 cut(s)	916
Eco130I	CCWWGG	3 cut(s)	555, 1791, 2043
Eco147I	AGGCCT	1 cut(s)	1219
Eco24I	GRGCYC	4 cut(s)	161, 274, 918, 1860
Eco31I	GGTCTC	1 cut(s)	586
Eco47I	GGWCC	6 cut(s)	351, 696, 796, 865, 982, 1140
Eco53kI	GAGCTC	1 cut(s)	916
Eco57I	CTGAAG	3 cut(s)	393, 518, 1934
Eco72I	CACGTG	1 cut(s)	626
Eco88I	CYCGRG	2 cut(s)	1136, 1724
EcoICRI	GAGCTC	1 cut(s)	916
EcoRI	GAATTC	1 cut(s)	1428
EcoRII	CCWGG	4 cut(s)	867, 1041, 1418, 2058
EcoT14I	CCWWGG	3 cut(s)	555, 1791, 2043
EcoT22I	ATGCAT	2 cut(s)	713, 1559
EcoT38I	GRGCYC	4 cut(s)	161, 274, 918, 1860
EgeI	GGCGCC	1 cut(s)	1290
EheI	GGCGCC	1 cut(s)	1290
ErhI	CCWWGG	3 cut(s)	555, 1791, 2043
FaqI	GGGAC	2 cut(s)	709, 1850
FauI	CCCGC	3 cut(s)	867, 947, 1376
FbaI	TGATCA	1 cut(s)	1374
FblI	GTMKAC	2 cut(s)	723, 1167
FokI	GGATG	2 cut(s)	426, 1685
FriOI	GRGCYC	4 cut(s)	161, 274, 918, 1860
FspBI	CTAG	2 cut(s)	242, 326
GlaI	GCGC	5 cut(s)	739, 960, 962, 967, 1290
GsaI	CCCAGC	1 cut(s)	990
GsuI	CTGGAG	1 cut(s)	383
HaeII	RGCGCY	2 cut(s)	969, 1292
HgaI	GACGC	2 cut(s)	709, 2002
HhaI	GCGC	5 cut(s)	740, 961, 963, 968, 1291
Hin1I	GRCGYC	3 cut(s)	720, 1206, 1289
Hin6I	GCGC	5 cut(s)	738, 959, 961, 966, 1289
HinP1I	GCGC	5 cut(s)	738, 959, 961, 966, 1289
HincII	GTYRAC	1 cut(s)	1168
HindII	GTYRAC	1 cut(s)	1168
HphI	GGTGA	6 cut(s)	797, 1309, 1369, 1405, 1720, 1865
Hpy188III	TCNNGA	9 cut(s)	343, 1210, 1265, 1333, 1340, 1726, 1909, 1922, 2004
Hpy99I	CGWCG	6 cut(s)	785, 1208, 1211, 1253, 1334, 1928
HpyAV	CCTTC	7 cut(s)	177, 267, 417, 486, 563, 1870, 1881
HpyCH4III	ACNGT	6 cut(s)	56, 496, 785, 1108, 1767, 1990
HpyCH4IV	ACGT	8 cut(s)	37, 62, 625, 726, 1206, 1269, 1934, 2030
HpyCH4V	TGCA	5 cut(s)	225, 711, 1303, 1366, 1557
HpyF3I	CTNAG	6 cut(s)	49, 391, 1018, 1196, 1524, 1910
HpySE526I	ACGT	8 cut(s)	37, 62, 625, 726, 1206, 1269, 1934, 2030
Hsp92I	GRCGYC	3 cut(s)	720, 1206, 1289
HspAI	GCGC	5 cut(s)	738, 959, 961, 966, 1289
KasI	GGCGCC	1 cut(s)	1288
Kpn2I	TCCGGA	1 cut(s)	1264
KroI	GCCGGC	2 cut(s)	764, 1013
KroNI	GCCGGC	2 cut(s)	766, 1015
Ksp22I	TGATCA	1 cut(s)	1374
Kzo9I	GATC	6 cut(s)	1080, 1149, 1374, 1395, 1545, 1798
LmnI	GCTCC	8 cut(s)	655, 661, 821, 871, 921, 1519, 1681, 1945
Lsp1109I	GCAGC	5 cut(s)	390, 520, 529, 1350, 1983
LweI	GCATC	3 cut(s)	942, 1005, 1290
MaeI	CTAG	2 cut(s)	242, 326
MaeII	ACGT	8 cut(s)	37, 62, 625, 726, 1206, 1269, 1934, 2030
MaeIII	GTNAC	5 cut(s)	496, 674, 731, 785, 1990
MalI	GATC	6 cut(s)	1082, 1151, 1376, 1397, 1547, 1800
MauBI	CGCGCGCG	1 cut(s)	959
MbiI	CCGCTC	1 cut(s)	874
MboI	GATC	6 cut(s)	1080, 1149, 1374, 1395, 1545, 1798
MflI	RGATCY	1 cut(s)	1798
MhlI	GDGCHC	4 cut(s)	161, 274, 918, 1860
MlsI	TGGCCA	3 cut(s)	1046, 1771, 1812
MluCI	AATT	8 cut(s)	183, 198, 526, 1238, 1428, 1464, 1630, 1969
MluNI	TGGCCA	3 cut(s)	1046, 1771, 1812
Mly113I	GGCGCC	1 cut(s)	1289
MlyI	GAGTC	9 cut(s)	61, 1011, 1535, 1555, 1565, 1655, 1685, 1729, 2033
MmeI	TCCRAC	4 cut(s)	506, 546, 1659, 1923
Mox20I	TGGCCA	3 cut(s)	1046, 1771, 1812
Mph1103I	ATGCAT	2 cut(s)	713, 1559
MroI	TCCGGA	1 cut(s)	1264
MroNI	GCCGGC	2 cut(s)	764, 1013
MroXI	GAANNNNTTC	1 cut(s)	1232
MscI	TGGCCA	3 cut(s)	1046, 1771, 1812
MseI	TTAA	3 cut(s)	201, 1581, 1629
MslI	CAYNNNNRTG	1 cut(s)	1298
Msp20I	TGGCCA	3 cut(s)	1046, 1771, 1812
MspR9I	CCNGG	7 cut(s)	694, 869, 1043, 1172, 1420, 1481, 2060
MteI	GCGCNGCGC	1 cut(s)	964
Mva1269I	GAATGC	4 cut(s)	713, 1481, 1513, 1966
MvaI	CCWGG	4 cut(s)	869, 1043, 1420, 2060
MvnI	CGCG	6 cut(s)	445, 586, 740, 959, 961, 963
NaeI	GCCGGC	2 cut(s)	766, 1015
NarI	GGCGCC	1 cut(s)	1289
NciI	CCSGG	3 cut(s)	694, 1172, 1481
NdeII	GATC	6 cut(s)	1080, 1149, 1374, 1395, 1545, 1798
NgoMIV	GCCGGC	2 cut(s)	764, 1013
NlaIV	GGNNCC	8 cut(s)	657, 697, 823, 984, 1141, 1290, 1521, 1718
NmuCI	GTSAC	3 cut(s)	674, 785, 1990
NsiI	ATGCAT	2 cut(s)	713, 1559
NspI	RCATGY	4 cut(s)	565, 840, 1066, 1688
NspV	TTCGAA	2 cut(s)	260, 1125
PaqCI	CACCTGC	1 cut(s)	1339
PauI	GCGCGC	1 cut(s)	959
PceI	AGGCCT	1 cut(s)	1219
PciI	ACATGT	1 cut(s)	561
PcsI	WCGNNNNNNNCGW	3 cut(s)	888, 1317, 1338
PctI	GAATGC	4 cut(s)	713, 1481, 1513, 1966
PdiI	GCCGGC	2 cut(s)	766, 1015
PdmI	GAANNNNTTC	1 cut(s)	1232
PfeI	GAWTC	3 cut(s)	1336, 1651, 1711
PflFI	GACNNNGTC	1 cut(s)	349
PflMI	CCANNNNNTGG	3 cut(s)	38, 862, 1351
PfoI	TCCNGGA	2 cut(s)	692, 867
PleI	GAGTC	9 cut(s)	61, 1010, 1534, 1555, 1565, 1654, 1684, 1729, 2033
PluTI	GGCGCC	1 cut(s)	1292
PmaCI	CACGTG	1 cut(s)	626
PmlI	CACGTG	1 cut(s)	626
PpsI	GAGTC	9 cut(s)	61, 1010, 1534, 1555, 1565, 1654, 1684, 1729, 2033
Ppu21I	YACGTR	2 cut(s)	38, 626
PscI	ACATGT	1 cut(s)	561
Psp124BI	GAGCTC	1 cut(s)	918
Psp6I	CCWGG	4 cut(s)	867, 1041, 1418, 2058
PspCI	CACGTG	1 cut(s)	626
PspFI	CCCAGC	1 cut(s)	986
PspGI	CCWGG	4 cut(s)	867, 1041, 1418, 2058
PspN4I	GGNNCC	8 cut(s)	657, 697, 823, 984, 1141, 1290, 1521, 1718
PspPI	GGNCC	8 cut(s)	351, 696, 796, 865, 973, 982, 1111, 1140
PstI	CTGCAG	1 cut(s)	1368
PsuI	RGATCY	1 cut(s)	1798
PsyI	GACNNNGTC	1 cut(s)	349
PteI	GCGCGC	1 cut(s)	959
RsaI	GTAC	1 cut(s)	1070
RsaNI	GTAC	1 cut(s)	1069
RseI	CAYNNNNRTG	1 cut(s)	1298
SacI	GAGCTC	1 cut(s)	918
SalI	GTCGAC	1 cut(s)	1166
SaqAI	TTAA	3 cut(s)	201, 1581, 1629
Sau3AI	GATC	6 cut(s)	1080, 1149, 1374, 1395, 1545, 1798
Sau96I	GGNCC	8 cut(s)	351, 696, 796, 865, 973, 982, 1111, 1140
SchI	GAGTC	9 cut(s)	61, 1011, 1535, 1555, 1565, 1655, 1685, 1729, 2033
ScrFI	CCNGG	7 cut(s)	694, 869, 1043, 1172, 1420, 1481, 2060
SduI	GDGCHC	4 cut(s)	161, 274, 918, 1860
SfaNI	GCATC	3 cut(s)	942, 1005, 1290
SfcI	CTRYAG	1 cut(s)	1364
SfoI	GGCGCC	1 cut(s)	1290
SfuI	TTCGAA	2 cut(s)	260, 1125
SgrAI	CRCCGGYG	2 cut(s)	1379, 1390
SinI	GGWCC	6 cut(s)	351, 696, 796, 865, 982, 1140
SmiMI	CAYNNNNRTG	1 cut(s)	1298
SpeI	ACTAGT	1 cut(s)	325
Sse9I	AATT	8 cut(s)	183, 198, 526, 1238, 1428, 1464, 1630, 1969
SseBI	AGGCCT	1 cut(s)	1219
SspDI	GGCGCC	1 cut(s)	1288
SspMI	CTAG	2 cut(s)	242, 326
SstI	GAGCTC	1 cut(s)	918
StuI	AGGCCT	1 cut(s)	1219
StyD4I	CCNGG	7 cut(s)	692, 867, 1041, 1170, 1418, 1479, 2058
StyI	CCWWGG	3 cut(s)	555, 1791, 2043
TaaI	ACNGT	6 cut(s)	56, 496, 785, 1108, 1767, 1990
TaiI	ACGT	8 cut(s)	40, 65, 628, 729, 1209, 1272, 1937, 2033
TaqI	TCGA	8 cut(s)	70, 260, 780, 1101, 1125, 1167, 1574, 1649
TasI	AATT	8 cut(s)	183, 198, 526, 1238, 1428, 1464, 1630, 1969
TauI	GCSGC	5 cut(s)	720, 827, 966, 1116, 1289
TfiI	GAWTC	3 cut(s)	1336, 1651, 1711
Tru1I	TTAA	3 cut(s)	201, 1581, 1629
Tru9I	TTAA	3 cut(s)	201, 1581, 1629
TscAI	CASTG	4 cut(s)	195, 527, 853, 1113
TseFI	GTSAC	3 cut(s)	674, 785, 1990
TseI	GCWGC	5 cut(s)	378, 508, 542, 1363, 1996
Tsp45I	GTSAC	3 cut(s)	674, 785, 1990
TspDTI	ATGAA	3 cut(s)	1869, 1982, 2023
TspGWI	ACGGA	4 cut(s)	662, 719, 834, 2001
TspRI	CASTG	4 cut(s)	195, 527, 853, 1113
Tth111I	GACNNNGTC	1 cut(s)	349
Van91I	CCANNNNNTGG	3 cut(s)	38, 862, 1351
VpaK11BI	GGWCC	6 cut(s)	351, 696, 796, 865, 982, 1140
XapI	RAATTY	4 cut(s)	183, 526, 1428, 1969
XceI	RCATGY	4 cut(s)	565, 840, 1066, 1688
XmiI	GTMKAC	2 cut(s)	723, 1167
XmnI	GAANNNNTTC	1 cut(s)	1232
XspI	CTAG	2 cut(s)	242, 326
ZraI	GACGTC	1 cut(s)	1207
Zsp2I	ATGCAT	2 cut(s)	713, 1559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.