Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013872

Physical Location & Seq

Genomic Coordinates Reverse (-)

41621717 .. 41623540

Gene Structure 1824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1282700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1824 bp

ATGACAACTCTTCCAAAAGCACCCAACTGTAACAGTTGGGCAAAAATGCATCACTCTTTCTCTTCTTCTTCTTCTTCTTCCTCATCAGTATTGGATCCTATGGGCTTCCCAAAAAGGTCCATCTTCTTGAAGAGCAGCAAAAACCGCAGAAGTTCTAGTAGCATTCACTGTGCTTTGCAATCTCCCTCGGTTCTTCACTTCCCAAAACAACCCTGCAACACACCAGTAGTTACCAAGGAAGCCACTCCTGCAAAACCCAAAACACATCAGCTTCCACAGTGGAACTTACTACAGAAAGCAGCTGCCATGGCGATCGACATGGTCGAAGGAGCGTTAGTCTCACGCGAGCGCCAAAACCCACTTCCCAAAACCTCAGACCCACGTGTCCAAATCGCCGGAAACTACGCTCCGGTGCCGGAACAAGCCGTCCGCCACTGCTTACCAATTACCGGCACCATACCTGACTGCATTAACGGCGTCTACCTCCGCAACGGCGCCAACCCTTTACACGAGCCCGTGGCCGGACACCACCTTTTCGACGGCGACGGCATGGTTCACGCCGTCAGCATCGATTCCGGATCGGCCAGCTACGCCTGCCGGTTCACGGAGACCCAGAGGCTCGTCCAAGAAAGGGAAATGGGGCGACCCGTTTTCCCCAAAGCCATCGGCGAGCTCCACGGCCACTCCGGCATCGCTCGCCTCCTCCTATTTTTCGCACGTGGGGCTTTAGGCCTCCTCGACAAAAACCACGGCACTGGCGTCGCAAACGCCGGCCTCGTCTACCACAACGGCCGGCTCTTAGCCATGTCGGAAGACGACTTGCCGTACCATGTCCGGGTCACTAAATCCGGGGACCTCGAAACGGTGGGTCGTTACGATTTCGACAGCCAGCTGGGGTCCACAATGATCGCACACCCGAAGGTTGACCCGGAATCCGGCTCCCTCCACGCGCTCAGCTACGATGTTGTTCAGAAGCCGTATTTAAAATACTTCCACTTCAGCCCCAACGGCTCGAAATCCCCGGACGTGGAGATCCCATTGGCAGGGCCCACCATGATGCATGACTTTGCGATCACCGAGAACTACGTGGTGATCCCGGACCAGCAGGTCGTGTTCAAGCTCGGAGAGATGATCACGGGTGGGTCCCCCGTGATCTACGACAAGAGCAAGATGTCGCGGTTCGGAATTCTTAAGAAGAATGACGTCAACGCCGACGACATCATCTGGGTCGACTCTCCCGACACGTTCTGCTTCCACCTCTGGAACGCGTGGGAGGAGCCCGAGTCCGCTGAGGTCGTTGTGATCGGCTCCTGCATGACGCCGCCCGACTCGATCTTCAACGAGTGCGACGAGAACTTAAAGAGCGTGCTGTCCGAAATCCGGCTCAATTTGAAAACCGGCGAGTCGAGTCGGCGGGCTATCTTGTCTGAATCGGATGATGTGAATTTGGAGGCGGGAATGGTAAATCGGAACTTACTCGGGAGGAAAACGCGGTTCGCTTACCTCGCAATTGCCGAACCCTGGCCCAAAGTTTCGGGTTTTGCTAAAGTTGATCTTTTTACCGGGGAGGTGAAAAAGTTTTTTTACGGCGAGAAAATGTACGGCGGTGAGCCCTTTTTCGTGCCGAGCACGGAAGAGGGCGCGTCGGAGGACGACGGTTATATTCTGACGTTCGTTCACGACGAGAAGAACTGGAAGTCGGAGCTTCAGATTGTTAACGCGGTCAATATGAAGTTGGAGGCTACGGTAAAATTACCTTCAAGGGTGCCCTACGGGTTTCATGGGACGTTTATAGAATCGAAGGACTTGGTAAATCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009687 GO:0009688 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010431 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

608

Amino Acids

66.93

Weight (kDa)

6.27

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	136 - 598	4.2e-131	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30100 AT4G18350
fragaria_vesca	FvH4_3g05440
malus_domestica	MD05G1282700.v1.1 MD10G1261000.v1.1
prunus_persica	Prupe.4G082000_v2.0.a1
pyrus_communis	pycom05g26210
rosa_chinensis	RchiOBHm_Chr5g0014331
rosa_laevigata	RLG00000032098
rosa_multiflora	Rmu_co8232887.1_g000001 Rmu_sc0009295.1_g000002
rosa_rugosa	Rorug05G0017400
rosa_samantha	Rh5AG111500 Rh5BG108800 Rh5CG120500 Rh5DG107500
rosa_wichuraiana	Rw5G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	383, 1106
AatII	GACGTC	1 cut(s)	1206
Acc36I	ACCTGC	1 cut(s)	1096
AccB1I	GGYRCC	4 cut(s)	412, 452, 494, 1765
AccI	GTMKAC	3 cut(s)	480, 780, 1230
AccII	CGCG	7 cut(s)	345, 950, 1177, 1268, 1492, 1643, 1721
AccIII	TCCGGA	1 cut(s)	575
AclWI	GGATC	5 cut(s)	89, 102, 586, 1027, 1087
AcoI	YGGCCR	4 cut(s)	519, 582, 679, 790
AcsI	RAATTY	2 cut(s)	1185, 1444
AcuI	CTGAAG	2 cut(s)	982, 1691
AcvI	CACGTG	2 cut(s)	383, 719
AcyI	GRCGYC	5 cut(s)	477, 495, 759, 1203, 1319
AfaI	GTAC	2 cut(s)	827, 1601
AflII	CTTAAG	1 cut(s)	1190
AflIII	ACRYGT	3 cut(s)	382, 1242, 1266
AgsI	TTSAA	5 cut(s)	130, 1117, 1339, 1393, 1761
AjiI	CACGTC	1 cut(s)	1027
AjnI	CCWGG	1 cut(s)	1520
AjuI	GAANNNNNNNTTGG	2 cut(s)	345, 377
AloI	GAACNNNNNNTCC	2 cut(s)	411, 443
AluBI	AGCT	8 cut(s)	271, 302, 588, 673, 892, 957, 1120, 1705
AluI	AGCT	8 cut(s)	271, 302, 588, 673, 892, 957, 1120, 1705
Alw21I	GWGCWC	2 cut(s)	675, 1631
Alw26I	GTCTC	2 cut(s)	343, 602
AlwI	GGATC	5 cut(s)	89, 102, 586, 1027, 1087
Ama87I	CYCGRG	2 cut(s)	1280, 1478
Aor13HI	TCCGGA	1 cut(s)	575
AoxI	GGCC	8 cut(s)	519, 582, 679, 730, 772, 790, 1046, 1523
ApaI	GGGCCC	1 cut(s)	1050
ApeKI	GCWGC	3 cut(s)	135, 299, 302
ApoI	RAATTY	2 cut(s)	1185, 1444
AspLEI	GCGC	4 cut(s)	351, 497, 952, 1643
AspS9I	GGNCC	8 cut(s)	117, 853, 897, 1046, 1047, 1099, 1143, 1524
AsuC2I	CCSGG	6 cut(s)	836, 850, 929, 1022, 1097, 1564
AsuHPI	GGTGA	4 cut(s)	1066, 1102, 1582, 1619
AvaI	CYCGRG	2 cut(s)	1280, 1478
AvaII	GGWCC	5 cut(s)	117, 853, 897, 1099, 1143
BaeGI	GKGCMC	2 cut(s)	1050, 1770
BamHI	GGATCC	1 cut(s)	94
BanI	GGYRCC	4 cut(s)	412, 452, 494, 1765
BanII	GRGCYC	5 cut(s)	516, 675, 1050, 1281, 1614
BauI	CACGAG	1 cut(s)	509
BbrPI	CACGTG	2 cut(s)	383, 719
BbsI	GAAGAC	1 cut(s)	819
Bbv12I	GWGCWC	2 cut(s)	675, 1631
BbvCI	CCTCAGC	1 cut(s)	1290
BbvI	GCAGC	3 cut(s)	147, 289, 311
BccI	CCATC	2 cut(s)	128, 671
BcgI	CGANNNNNNTGC	2 cut(s)	742, 776
BciT130I	CCWGG	1 cut(s)	1522
BclI	TGATCA	1 cut(s)	1131
BcnI	CCSGG	6 cut(s)	836, 850, 929, 1022, 1097, 1564
BcoDI	GTCTC	2 cut(s)	343, 602
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	290
BfoI	RGCGCY	2 cut(s)	352, 498
BfrI	CTTAAG	1 cut(s)	1190
BfuAI	ACCTGC	1 cut(s)	1096
BglI	GCCNNNNNGGC	2 cut(s)	687, 1008
BisI	GCNGC	4 cut(s)	136, 300, 303, 1322
BlpI	GCTNAGC	1 cut(s)	953
BlsI	GCNGC	4 cut(s)	137, 301, 304, 1323
Bme1390I	CCNGG	7 cut(s)	836, 850, 929, 1022, 1097, 1522, 1564
Bme18I	GGWCC	5 cut(s)	117, 853, 897, 1099, 1143
BmeT110I	CYCGRG	2 cut(s)	1280, 1478
BmgBI	CACGTC	1 cut(s)	1027
BmgT120I	GGNCC	8 cut(s)	117, 853, 897, 1046, 1047, 1099, 1143, 1524
BmrFI	CCNGG	7 cut(s)	836, 850, 929, 1022, 1097, 1522, 1564
BmsI	GCATC	4 cut(s)	58, 576, 699, 1047
BpiI	GAAGAC	1 cut(s)	819
Bpu10I	CCTNAGC	1 cut(s)	1290
Bpu1102I	GCTNAGC	1 cut(s)	953
BpuMI	CCSGG	6 cut(s)	836, 850, 929, 1022, 1097, 1564
Bsa29I	ATCGAT	1 cut(s)	570
BsaAI	YACGTR	3 cut(s)	383, 719, 1087
BsaHI	GRCGYC	5 cut(s)	477, 495, 759, 1203, 1319
BsaI	GGTCTC	1 cut(s)	602
BsaWI	WCCGGW	2 cut(s)	409, 575
BsaXI	ACNNNNNCTCC	6 cut(s)	321, 351, 668, 698, 1268, 1298
Bse118I	RCCGGY	5 cut(s)	449, 597, 770, 792, 1397
Bse1I	ACTGG	3 cut(s)	224, 760, 1697
BseAI	TCCGGA	1 cut(s)	575
BseBI	CCWGG	1 cut(s)	1522
BseCI	ATCGAT	1 cut(s)	570
BseGI	GGATG	1 cut(s)	1441
BseMII	CTCAG	3 cut(s)	387, 967, 1281
BseNI	ACTGG	3 cut(s)	224, 760, 1697
BseRI	GAGGAG	3 cut(s)	692, 725, 1289
BseSI	GKGCMC	2 cut(s)	1050, 1770
BseX3I	CGGCCG	1 cut(s)	790
BseXI	GCAGC	3 cut(s)	147, 289, 311
BseYI	CCCAGC	1 cut(s)	892
Bsh1236I	CGCG	7 cut(s)	345, 950, 1177, 1268, 1492, 1643, 1721
Bsh1285I	CGRYCG	2 cut(s)	315, 793
BshFI	GGCC	8 cut(s)	521, 584, 681, 732, 774, 792, 1048, 1525
BshNI	GGYRCC	4 cut(s)	412, 452, 494, 1765
BshVI	ATCGAT	1 cut(s)	570
BsiEI	CGRYCG	2 cut(s)	315, 793
BsiHKAI	GWGCWC	2 cut(s)	675, 1631
BsiHKCI	CYCGRG	2 cut(s)	1280, 1478
BslFI	GGGAC	3 cut(s)	866, 1129, 1798
BsmAI	GTCTC	2 cut(s)	343, 602
BsmFI	GGGAC	3 cut(s)	866, 1129, 1798
BsmI	GAATGC	1 cut(s)	162
BsnI	GGCC	8 cut(s)	521, 584, 681, 732, 774, 792, 1048, 1525
Bso31I	GGTCTC	1 cut(s)	602
BsoBI	CYCGRG	2 cut(s)	1280, 1478
Bsp120I	GGGCCC	1 cut(s)	1046
Bsp1286I	GDGCHC	7 cut(s)	516, 675, 1050, 1281, 1614, 1631, 1770
Bsp13I	TCCGGA	1 cut(s)	575
Bsp1720I	GCTNAGC	1 cut(s)	953
Bsp19I	CCATGG	1 cut(s)	306
BspANI	GGCC	8 cut(s)	521, 584, 681, 732, 774, 792, 1048, 1525
BspCNI	CTCAG	3 cut(s)	386, 966, 1282
BspDI	ATCGAT	1 cut(s)	570
BspEI	TCCGGA	1 cut(s)	575
BspFNI	CGCG	7 cut(s)	345, 950, 1177, 1268, 1492, 1643, 1721
BspMI	ACCTGC	1 cut(s)	1096
BspPI	GGATC	5 cut(s)	89, 102, 586, 1027, 1087
BspQI	GCTCTTC	1 cut(s)	125
BspT107I	GGYRCC	4 cut(s)	412, 452, 494, 1765
BspTI	CTTAAG	1 cut(s)	1190
BspTNI	GGTCTC	1 cut(s)	602
BsrFI	RCCGGY	5 cut(s)	449, 597, 770, 792, 1397
BsrI	ACTGG	3 cut(s)	224, 760, 1697
BssAI	RCCGGY	5 cut(s)	449, 597, 770, 792, 1397
BssNI	GRCGYC	5 cut(s)	477, 495, 759, 1203, 1319
BssSI	CACGAG	1 cut(s)	509
BssT1I	CCWWGG	2 cut(s)	234, 306
Bst2BI	CACGAG	1 cut(s)	509
Bst2UI	CCWGG	1 cut(s)	1522
Bst4CI	ACNGT	7 cut(s)	29, 35, 170, 279, 865, 1658, 1747
Bst6I	CTCTTC	4 cut(s)	15, 67, 125, 1629
BstACI	GRCGYC	5 cut(s)	477, 495, 759, 1203, 1319
BstAFI	CTTAAG	1 cut(s)	1190
BstBAI	YACGTR	3 cut(s)	383, 719, 1087
BstDEI	CTNAG	4 cut(s)	373, 799, 953, 1290
BstDSI	CCRYGG	4 cut(s)	306, 516, 676, 748
BstF5I	GGATG	1 cut(s)	1441
BstFNI	CGCG	7 cut(s)	345, 950, 1177, 1268, 1492, 1643, 1721
BstH2I	RGCGCY	2 cut(s)	352, 498
BstHHI	GCGC	4 cut(s)	351, 497, 952, 1643
BstMAI	GTCTC	2 cut(s)	343, 602
BstMCI	CGRYCG	2 cut(s)	315, 793
BstNI	CCWGG	1 cut(s)	1522
BstSCI	CCNGG	7 cut(s)	834, 848, 927, 1020, 1095, 1520, 1562
BstSFI	CTRYAG	1 cut(s)	290
BstSLI	GKGCMC	2 cut(s)	1050, 1770
BstUI	CGCG	7 cut(s)	345, 950, 1177, 1268, 1492, 1643, 1721
BstV1I	GCAGC	3 cut(s)	147, 289, 311
BstV2I	GAAGAC	1 cut(s)	819
BstX2I	RGATCY	2 cut(s)	94, 1032
BstXI	CCANNNNNNTGG	1 cut(s)	755
BstYI	RGATCY	2 cut(s)	94, 1032
BstZI	CGGCCG	1 cut(s)	790
Bsu15I	ATCGAT	1 cut(s)	570
BsuRI	GGCC	8 cut(s)	521, 584, 681, 732, 774, 792, 1048, 1525
BsuTUI	ATCGAT	1 cut(s)	570
BtgI	CCRYGG	4 cut(s)	306, 516, 676, 748
BtgZI	GCGATG	1 cut(s)	676
BtrI	CACGTC	1 cut(s)	1027
BtsCI	GGATG	1 cut(s)	1441
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	4 cut(s)	166, 284, 433, 753
BveI	ACCTGC	1 cut(s)	1096
CfoI	GCGC	4 cut(s)	351, 497, 952, 1643
Cfr10I	RCCGGY	5 cut(s)	449, 597, 770, 792, 1397
Cfr13I	GGNCC	8 cut(s)	117, 853, 897, 1046, 1047, 1099, 1143, 1524
ClaI	ATCGAT	1 cut(s)	570
CseI	GACGC	4 cut(s)	466, 748, 1327, 1632
Csp6I	GTAC	2 cut(s)	826, 1600
CviAII	CATG	9 cut(s)	307, 319, 550, 805, 830, 1054, 1061, 1315, 1781
CviQI	GTAC	2 cut(s)	826, 1600
DdeI	CTNAG	4 cut(s)	373, 799, 953, 1290
DinI	GGCGCC	1 cut(s)	496
DraI	TTTAAA	1 cut(s)	984
DrdI	GACNNNNNNGTC	2 cut(s)	383, 1106
DseDI	GACNNNNNNGTC	2 cut(s)	383, 1106
EaeI	YGGCCR	4 cut(s)	519, 582, 679, 790
EagI	CGGCCG	1 cut(s)	790
Eam1104I	CTCTTC	4 cut(s)	15, 67, 125, 1629
EarI	CTCTTC	4 cut(s)	15, 67, 125, 1629
EciI	GGCGGA	1 cut(s)	419
Ecl136II	GAGCTC	1 cut(s)	673
EclXI	CGGCCG	1 cut(s)	790
Eco130I	CCWWGG	2 cut(s)	234, 306
Eco147I	AGGCCT	1 cut(s)	732
Eco24I	GRGCYC	5 cut(s)	516, 675, 1050, 1281, 1614
Eco31I	GGTCTC	1 cut(s)	602
Eco47I	GGWCC	5 cut(s)	117, 853, 897, 1099, 1143
Eco52I	CGGCCG	1 cut(s)	790
Eco53kI	GAGCTC	1 cut(s)	673
Eco57I	CTGAAG	2 cut(s)	982, 1691
Eco72I	CACGTG	2 cut(s)	383, 719
Eco88I	CYCGRG	2 cut(s)	1280, 1478
EcoICRI	GAGCTC	1 cut(s)	673
EcoO109I	RGGNCCY	3 cut(s)	853, 1046, 1143
EcoRI	GAATTC	1 cut(s)	1185
EcoRII	CCWGG	1 cut(s)	1520
EcoT14I	CCWWGG	2 cut(s)	234, 306
EcoT22I	ATGCAT	2 cut(s)	51, 1062
EcoT38I	GRGCYC	5 cut(s)	516, 675, 1050, 1281, 1614
EgeI	GGCGCC	1 cut(s)	496
EheI	GGCGCC	1 cut(s)	496
ErhI	CCWWGG	2 cut(s)	234, 306
FaeI	CATG	9 cut(s)	310, 322, 553, 808, 833, 1057, 1064, 1318, 1784
FalI	AAGNNNNNCTT	2 cut(s)	1539, 1571
FaqI	GGGAC	3 cut(s)	866, 1129, 1798
FatI	CATG	9 cut(s)	306, 318, 549, 804, 829, 1053, 1060, 1314, 1780
FauI	CCCGC	2 cut(s)	1407, 1447
FbaI	TGATCA	1 cut(s)	1131
FblI	GTMKAC	3 cut(s)	480, 780, 1230
Fnu4HI	GCNGC	4 cut(s)	136, 300, 303, 1322
FokI	GGATG	1 cut(s)	1448
FriOI	GRGCYC	5 cut(s)	516, 675, 1050, 1281, 1614
Fsp4HI	GCNGC	4 cut(s)	136, 300, 303, 1322
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	4 cut(s)	350, 496, 951, 1642
GluI	GCNGC	4 cut(s)	136, 300, 303, 1322
GsaI	CCCAGC	1 cut(s)	896
HaeII	RGCGCY	2 cut(s)	352, 498
HaeIII	GGCC	8 cut(s)	521, 584, 681, 732, 774, 792, 1048, 1525
HgaI	GACGC	4 cut(s)	466, 748, 1327, 1632
HhaI	GCGC	4 cut(s)	351, 497, 952, 1643
Hin1I	GRCGYC	5 cut(s)	477, 495, 759, 1203, 1319
Hin1II	CATG	9 cut(s)	310, 322, 553, 808, 833, 1057, 1064, 1318, 1784
Hin6I	GCGC	4 cut(s)	349, 495, 950, 1641
HinP1I	GCGC	4 cut(s)	349, 495, 950, 1641
HincII	GTYRAC	4 cut(s)	925, 1207, 1231, 1717
HindII	GTYRAC	4 cut(s)	925, 1207, 1231, 1717
HinfI	GANTC	9 cut(s)	572, 932, 1232, 1283, 1328, 1403, 1408, 1430, 1796
HpaI	GTTAAC	1 cut(s)	1717
HphI	GGTGA	4 cut(s)	1066, 1102, 1582, 1619
Hpy188III	TCNNGA	6 cut(s)	127, 576, 1238, 1261, 1480, 1679
Hpy99I	CGWCG	8 cut(s)	542, 548, 764, 1217, 1352, 1648, 1658, 1685
HpyAV	CCTTC	4 cut(s)	320, 913, 1767, 1795
HpyCH4III	ACNGT	7 cut(s)	29, 35, 170, 279, 865, 1658, 1747
HpyCH4IV	ACGT	8 cut(s)	382, 718, 1026, 1086, 1203, 1244, 1670, 1787
HpyCH4V	TGCA	7 cut(s)	49, 178, 216, 251, 468, 1060, 1314
HpyF3I	CTNAG	4 cut(s)	373, 799, 953, 1290
HpySE526I	ACGT	8 cut(s)	382, 718, 1026, 1086, 1203, 1244, 1670, 1787
Hsp92I	GRCGYC	5 cut(s)	477, 495, 759, 1203, 1319
Hsp92II	CATG	9 cut(s)	310, 322, 553, 808, 833, 1057, 1064, 1318, 1784
HspAI	GCGC	4 cut(s)	349, 495, 950, 1641
KasI	GGCGCC	1 cut(s)	494
KflI	GGGWCCC	1 cut(s)	1143
Kpn2I	TCCGGA	1 cut(s)	575
KroI	GCCGGC	2 cut(s)	770, 792
KroNI	GCCGGC	2 cut(s)	772, 794
Ksp22I	TGATCA	1 cut(s)	1131
KspAI	GTTAAC	1 cut(s)	1717
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	7 cut(s)	329, 412, 678, 944, 1276, 1313, 1702
Lsp1109I	GCAGC	3 cut(s)	147, 289, 311
LweI	GCATC	4 cut(s)	58, 576, 699, 1047
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	8 cut(s)	382, 718, 1026, 1086, 1203, 1244, 1670, 1787
MaeIII	GTNAC	4 cut(s)	29, 229, 838, 872
MfeI	CAATTG	1 cut(s)	1509
MflI	RGATCY	2 cut(s)	94, 1032
MhlI	GDGCHC	7 cut(s)	516, 675, 1050, 1281, 1614, 1631, 1770
MluCI	AATT	6 cut(s)	444, 1185, 1387, 1444, 1509, 1751
MluI	ACGCGT	1 cut(s)	1266
Mly113I	GGCGCC	1 cut(s)	495
MlyI	GAGTC	5 cut(s)	1226, 1292, 1322, 1412, 1417
MmeI	TCCRAC	4 cut(s)	789, 1626, 1680, 1716
Mph1103I	ATGCAT	2 cut(s)	51, 1062
MroI	TCCGGA	1 cut(s)	575
MroNI	GCCGGC	2 cut(s)	770, 792
MseI	TTAA	5 cut(s)	471, 983, 1191, 1358, 1716
MslI	CAYNNNNRTG	1 cut(s)	1055
MspA1I	CMGCKG	3 cut(s)	302, 892, 1289
MspCI	CTTAAG	1 cut(s)	1190
MspR9I	CCNGG	7 cut(s)	836, 850, 929, 1022, 1097, 1522, 1564
MunI	CAATTG	1 cut(s)	1509
Mva1269I	GAATGC	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	1522
MvnI	CGCG	7 cut(s)	345, 950, 1177, 1268, 1492, 1643, 1721
NaeI	GCCGGC	2 cut(s)	772, 794
NarI	GGCGCC	1 cut(s)	495
NciI	CCSGG	6 cut(s)	836, 850, 929, 1022, 1097, 1564
NcoI	CCATGG	1 cut(s)	306
NgoMIV	GCCGGC	2 cut(s)	770, 792
NlaIII	CATG	9 cut(s)	310, 322, 553, 808, 833, 1057, 1064, 1318, 1784
NmeAIII	GCCGAG	1 cut(s)	1650
NmuCI	GTSAC	1 cut(s)	838
NsiI	ATGCAT	2 cut(s)	51, 1062
PceI	AGGCCT	1 cut(s)	732
PciSI	GCTCTTC	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	8 cut(s)	321, 756, 774, 1209, 1236, 1347, 1512, 1680
PctI	GAATGC	1 cut(s)	162
PdiI	GCCGGC	2 cut(s)	772, 794
PfeI	GAWTC	4 cut(s)	572, 932, 1430, 1796
PflFI	GACNNNGTC	1 cut(s)	320
PfoI	TCCNGGA	1 cut(s)	1095
PkrI	GCNGC	4 cut(s)	137, 301, 304, 1323
Ple19I	CGATCG	1 cut(s)	315
PleI	GAGTC	5 cut(s)	1226, 1291, 1322, 1411, 1416
PluTI	GGCGCC	1 cut(s)	498
PmaCI	CACGTG	2 cut(s)	383, 719
PmlI	CACGTG	2 cut(s)	383, 719
PpsI	GAGTC	5 cut(s)	1226, 1291, 1322, 1411, 1416
Ppu21I	YACGTR	3 cut(s)	383, 719, 1087
PpuMI	RGGWCCY	2 cut(s)	853, 1143
Psp124BI	GAGCTC	1 cut(s)	675
Psp5II	RGGWCCY	2 cut(s)	853, 1143
Psp6I	CCWGG	1 cut(s)	1520
PspCI	CACGTG	2 cut(s)	383, 719
PspFI	CCCAGC	1 cut(s)	892
PspGI	CCWGG	1 cut(s)	1520
PspOMI	GGGCCC	1 cut(s)	1046
PspPI	GGNCC	8 cut(s)	117, 853, 897, 1046, 1047, 1099, 1143, 1524
PspPPI	RGGWCCY	2 cut(s)	853, 1143
PsuI	RGATCY	2 cut(s)	94, 1032
PsyI	GACNNNGTC	1 cut(s)	320
PvuI	CGATCG	1 cut(s)	315
PvuII	CAGCTG	2 cut(s)	302, 892
RsaI	GTAC	2 cut(s)	827, 1601
RsaNI	GTAC	2 cut(s)	826, 1600
RseI	CAYNNNNRTG	1 cut(s)	1055
SacI	GAGCTC	1 cut(s)	675
SalI	GTCGAC	1 cut(s)	1229
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	5 cut(s)	471, 983, 1191, 1358, 1716
SatI	GCNGC	4 cut(s)	136, 300, 303, 1322
Sau96I	GGNCC	8 cut(s)	117, 853, 897, 1046, 1047, 1099, 1143, 1524
SchI	GAGTC	5 cut(s)	1226, 1292, 1322, 1412, 1417
ScrFI	CCNGG	7 cut(s)	836, 850, 929, 1022, 1097, 1522, 1564
SduI	GDGCHC	7 cut(s)	516, 675, 1050, 1281, 1614, 1631, 1770
SfaNI	GCATC	4 cut(s)	58, 576, 699, 1047
SfcI	CTRYAG	1 cut(s)	290
SfoI	GGCGCC	1 cut(s)	496
SinI	GGWCC	5 cut(s)	117, 853, 897, 1099, 1143
SmiMI	CAYNNNNRTG	1 cut(s)	1055
SmlI	CTYRAG	1 cut(s)	1190
SmoI	CTYRAG	1 cut(s)	1190
Sse9I	AATT	6 cut(s)	444, 1185, 1387, 1444, 1509, 1751
SseBI	AGGCCT	1 cut(s)	732
SspDI	GGCGCC	1 cut(s)	494
SspMI	CTAG	1 cut(s)	156
SstI	GAGCTC	1 cut(s)	675
StuI	AGGCCT	1 cut(s)	732
StyD4I	CCNGG	7 cut(s)	834, 848, 927, 1020, 1095, 1520, 1562
StyI	CCWWGG	2 cut(s)	234, 306
TaaI	ACNGT	7 cut(s)	29, 35, 170, 279, 865, 1658, 1747
TaiI	ACGT	8 cut(s)	385, 721, 1029, 1089, 1206, 1247, 1673, 1790
TasI	AATT	6 cut(s)	444, 1185, 1387, 1444, 1509, 1751
TauI	GCSGC	1 cut(s)	1324
TfiI	GAWTC	4 cut(s)	572, 932, 1430, 1796
Tru1I	TTAA	5 cut(s)	471, 983, 1191, 1358, 1716
Tru9I	TTAA	5 cut(s)	471, 983, 1191, 1358, 1716
TscAI	CASTG	4 cut(s)	173, 284, 440, 760
TseFI	GTSAC	1 cut(s)	838
TseI	GCWGC	3 cut(s)	135, 299, 302
Tsp45I	GTSAC	1 cut(s)	838
TspDTI	ATGAA	2 cut(s)	1745, 1769
TspGWI	ACGGA	2 cut(s)	620, 1646
TspRI	CASTG	4 cut(s)	173, 284, 440, 760
Tth111I	GACNNNGTC	1 cut(s)	320
Vha464I	CTTAAG	1 cut(s)	1190
VpaK11BI	GGWCC	5 cut(s)	117, 853, 897, 1099, 1143
XapI	RAATTY	2 cut(s)	1185, 1444
XmiI	GTMKAC	3 cut(s)	480, 780, 1230
XspI	CTAG	1 cut(s)	156
ZraI	GACGTC	1 cut(s)	1204
Zsp2I	ATGCAT	2 cut(s)	51, 1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.