Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013872

Physical Location & Seq

Genomic Coordinates Reverse (-)

35524142 .. 35526217

Gene Structure 2076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1261000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2076 bp

ATGTCTGAGCTGGACTGGACCTCCTTCACAAATAAACAACTTCTCTTTTCACCTCCCCTCCCAACTCTATTTATACTCCACATTTCCTACTTCCTTTCTCCCCAAACCTCTCACTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTTTGCTTTCACCCAGAGGTTTTAACGGAAGCAAAAACACAAAAACCTCCGTAAGCATACACAAAGCTATGTCAACTCTTCCAAAAGCACCTAACTCTAATAGTTGGGCACAAATGCATCTCTCTTTCTTTTCTTCTTCATCAATAGTGGATCCTATGGGCTTCTCCAAAAGGTCCATCTCCTTGAAGAGCAGCAAAAACCGTAGAAATTCGAGTATCATTCACTGTGCTTTACGATCTCCCTCAGTTCTTCACTTCCCAAAACCACCCTACAACACACCAGTAATTACCAAGGAAGCCACTCCAGCAAAACCCAAAACACGTCAGCTTCCACAGTGGAATTTACTACAGAAAGCAGCTGCCATGGCGATCGACGTGGTCGAAGGAGCATTAGTCTCACGTGAGCGCCAAAACCCACTTCCCAAAACCTCAGACCCACGTGTCCAAATCGCCGGAAATTACGCTCCTGTGCCGGAGCAAGCCGTCCGCCACTCCTTACCCGTTACCGGCACCATACCCGACTGCATTAACGGCGTCTACGTCCGCAACGGCGCCAACCCATTACACGAGCCCGTGGCCGGGCACCACCTTTTCGACGGCGACGGCATGGTTCACGCCGTCAGCATCGATTCCGGTTCTGCCAGCTACGCCTGCCGGTTCACCGAGACTCAGAGGCTCGTCCAAGAAAGGGAAATGGGGCGACCAGTTTTCCCCAAAGCCATCGGCGAGCTCCACGGCCACTCCGGCATCGCTCGCCTCCTCTTATTTTTCGCACGTGGGGCTTTAGGCCTCCTCGATAAAAACCAGGGCACAGGCGTCGCAAACGCCGGCCTAGTCTACCACAACGGCCGCCTCTTAGCCATGTCGGAAGACGACTTGCCGTACCAGGTCCGGGTCACTAAATCCGGGGACCTCGAAACGGTCGGTCGTTACGATTTCGACAGCCAGCTGGGGTCAACAATGATCGCACACCCAAAGGTCGACCCGGAGTCGGGCTCTCTCCACTCCCTCAGCTACGACGTCGTTCAGAAGCCGTATTTAAAATACTTCCACTTCTCCCCCAATGGCGCGAAATCCCCGGACGTGGAGATCCCATTGGCAGGGCCCACCATGATGCATGACTTCGCGATCACCGAGAACTACGTCGTGATCCCGGACCAGCAGGTGGTGTTCAAGCTCGGAGAGATGATCACGGGTGGGTCTCCTGTGATCTACGACAAGACCAAGATGTCGCGGTTCGGAATTCTTAAGAAGAATGAGGAGAACGCCGACGACATCATTTGGGTTGACTCTCCCGACACGTTCTGCTTCCACCTCTGGAACGCGTGGGAGGAGCCCGAGTCGGCCGAGGTCGTTGTGATTGGATCCTGCATGACTCCCCCCGACTCAATCTTCAACGAGTGCGATGAGAACCTCAAAAGCGTGCTGTCCGAAATCCGGCTAAATTTGAAAACCGGCGAGTCGACTCGGCGGGCGATTTTGTCTGAGTCGGACGACGTGAATTTGGAGGCGGGAATGGTGAACAGGAACCGACTTGGTAGGAAAACTCGGTTCGCTTACCTCGCAATTGCCGAACCGTGGCCGAAAGTTTCGGGTTTTGCCAAAGTAGATCTTTTCACCGGGGAGGTGAAAAAGTTTTTTTACGGCGAGAAGAAGTACGGTGGTGAGCCGTTTTTCGTGCCGAGCACGGCCGAGCGCGCGTCGGAGGACGAAGGTTACATTCTGACGTTCGTTCACGACGAGAAGAAATGGAAGTCGGAGCTTCAGATTGTTAACGCGGCAAATATGAAGTTGGAGGCTACGGTAAAGTTACCTTCAAGGGTACCCTACGGGTTTCATGGGACGTTTATAGAATCGAAGGACTTGGTAAATCAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009687 GO:0009688 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010431 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

692

Amino Acids

76.37

Weight (kDa)

7.34

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	220 - 682	1.3e-131	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30100 AT4G18350
fragaria_vesca	FvH4_3g05440
malus_domestica	MD05G1282700.v1.1 MD10G1261000.v1.1
prunus_persica	Prupe.4G082000_v2.0.a1
pyrus_communis	pycom05g26210
rosa_chinensis	RchiOBHm_Chr5g0014331
rosa_laevigata	RLG00000032098
rosa_multiflora	Rmu_co8232887.1_g000001 Rmu_sc0009295.1_g000002
rosa_rugosa	Rorug05G0017400
rosa_samantha	Rh5AG111500 Rh5BG108800 Rh5CG120500 Rh5DG107500
rosa_wichuraiana	Rw5G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1348
AasI	GACNNNNNNGTC	2 cut(s)	635, 1423
AatII	GACGTC	1 cut(s)	1218
Acc36I	ACCTGC	1 cut(s)	1348
Acc65I	GGTACC	1 cut(s)	2017
AccB1I	GGYRCC	4 cut(s)	704, 746, 777, 2017
AccB7I	CCANNNNNTGG	1 cut(s)	1360
AccI	GTMKAC	4 cut(s)	732, 1032, 1176, 1658
AccII	CGCG	7 cut(s)	1265, 1322, 1429, 1520, 1893, 1895, 1973
AciI	CCGC	7 cut(s)	682, 739, 1045, 1429, 1666, 1706, 1973
AclWI	GGATC	6 cut(s)	341, 354, 1279, 1339, 1554, 1567
AcoI	YGGCCR	6 cut(s)	771, 931, 1042, 1539, 1775, 1884
AcsI	RAATTY	5 cut(s)	403, 535, 1437, 1639, 1696
AcuI	CTGAAG	1 cut(s)	1943
AcvI	CACGTG	3 cut(s)	596, 635, 971
AcyI	GRCGYC	4 cut(s)	729, 747, 1011, 1215
AfaI	GTAC	3 cut(s)	1079, 1853, 2019
AflII	CTTAAG	1 cut(s)	1442
AflIII	ACRYGT	4 cut(s)	515, 634, 1494, 1518
AgsI	TTSAA	5 cut(s)	382, 1369, 1591, 1645, 2013
AhdI	GACNNNNNGTC	1 cut(s)	1183
AjiI	CACGTC	4 cut(s)	518, 571, 1279, 1693
AjnI	CCWGG	2 cut(s)	999, 1080
AjuI	GAANNNNNNNTTGG	2 cut(s)	597, 629
Alw21I	GWGCWC	2 cut(s)	927, 1883
Alw26I	GTCTC	3 cut(s)	595, 854, 1401
AlwI	GGATC	6 cut(s)	341, 354, 1279, 1339, 1554, 1567
Ama87I	CYCGRG	1 cut(s)	1532
AoxI	GGCC	9 cut(s)	771, 931, 982, 1024, 1042, 1298, 1539, 1775, 1884
ApaI	GGGCCC	1 cut(s)	1302
ApeKI	GCWGC	3 cut(s)	387, 551, 554
ApoI	RAATTY	5 cut(s)	403, 535, 1437, 1639, 1696
Asp718I	GGTACC	1 cut(s)	2017
AspLEI	GCGC	5 cut(s)	603, 749, 1265, 1893, 1895
AspS9I	GGNCC	7 cut(s)	18, 369, 1084, 1105, 1298, 1299, 1351
AsuC2I	CCSGG	7 cut(s)	775, 1088, 1102, 1181, 1274, 1349, 1816
AsuHPI	GGTGA	8 cut(s)	42, 198, 847, 1318, 1726, 1804, 1834, 1871
AvaI	CYCGRG	1 cut(s)	1532
AvaII	GGWCC	5 cut(s)	18, 369, 1084, 1105, 1351
BaeGI	GKGCMC	4 cut(s)	307, 780, 1007, 1302
BamHI	GGATCC	2 cut(s)	346, 1559
BanI	GGYRCC	4 cut(s)	704, 746, 777, 2017
BanII	GRGCYC	5 cut(s)	768, 927, 1193, 1302, 1533
BauI	CACGAG	1 cut(s)	761
BbrPI	CACGTG	3 cut(s)	596, 635, 971
BbsI	GAAGAC	1 cut(s)	1071
Bbv12I	GWGCWC	2 cut(s)	927, 1883
BbvCI	CCTCAGC	1 cut(s)	1205
BbvI	GCAGC	3 cut(s)	399, 541, 563
BccI	CCATC	2 cut(s)	380, 923
BcgI	CGANNNNNNTGC	2 cut(s)	994, 1028
BciT130I	CCWGG	2 cut(s)	1001, 1082
BclI	TGATCA	1 cut(s)	1383
BcnI	CCSGG	7 cut(s)	775, 1088, 1102, 1181, 1274, 1349, 1816
BcoDI	GTCTC	3 cut(s)	595, 854, 1401
BfaI	CTAG	1 cut(s)	1028
BfmI	CTRYAG	1 cut(s)	542
BfoI	RGCGCY	2 cut(s)	604, 750
BfrI	CTTAAG	1 cut(s)	1442
BfuAI	ACCTGC	1 cut(s)	1348
BglI	GCCNNNNNGGC	1 cut(s)	939
BglII	AGATCT	1 cut(s)	1804
BisI	GCNGC	5 cut(s)	388, 552, 555, 1045, 1974
BlsI	GCNGC	5 cut(s)	389, 553, 556, 1046, 1975
Bme1390I	CCNGG	9 cut(s)	775, 1001, 1082, 1088, 1102, 1181, 1274, 1349, 1816
Bme18I	GGWCC	5 cut(s)	18, 369, 1084, 1105, 1351
BmeRI	GACNNNNNGTC	1 cut(s)	1183
BmeT110I	CYCGRG	1 cut(s)	1532
BmgBI	CACGTC	4 cut(s)	518, 571, 1279, 1693
BmgT120I	GGNCC	7 cut(s)	18, 369, 1084, 1105, 1298, 1299, 1351
BmrFI	CCNGG	9 cut(s)	775, 1001, 1082, 1088, 1102, 1181, 1274, 1349, 1816
BmsI	GCATC	4 cut(s)	322, 828, 951, 1299
BpiI	GAAGAC	1 cut(s)	1071
BplI	GAGNNNNNCTC	2 cut(s)	1175, 1207
BpmI	CTGGAG	1 cut(s)	483
Bpu10I	CCTNAGC	1 cut(s)	1205
BpuMI	CCSGG	7 cut(s)	775, 1088, 1102, 1181, 1274, 1349, 1816
Bsa29I	ATCGAT	1 cut(s)	822
BsaAI	YACGTR	3 cut(s)	596, 635, 971
BsaHI	GRCGYC	4 cut(s)	729, 747, 1011, 1215
BsaI	GGTCTC	1 cut(s)	1401
BsaWI	WCCGGW	1 cut(s)	827
Bse118I	RCCGGY	4 cut(s)	701, 849, 1022, 1649
Bse1I	ACTGG	3 cut(s)	20, 476, 899
BseBI	CCWGG	2 cut(s)	1001, 1082
BseCI	ATCGAT	1 cut(s)	822
BseMII	CTCAG	5 cut(s)	453, 639, 878, 1219, 1671
BseNI	ACTGG	3 cut(s)	20, 476, 899
BsePI	GCGCGC	1 cut(s)	1891
BseRI	GAGGAG	4 cut(s)	944, 977, 1469, 1541
BseSI	GKGCMC	4 cut(s)	307, 780, 1007, 1302
BseX3I	CGGCCG	3 cut(s)	1042, 1539, 1884
BseXI	GCAGC	3 cut(s)	399, 541, 563
BseYI	CCCAGC	1 cut(s)	1144
Bsh1236I	CGCG	7 cut(s)	1265, 1322, 1429, 1520, 1893, 1895, 1973
Bsh1285I	CGRYCG	6 cut(s)	567, 1045, 1119, 1123, 1542, 1887
BshFI	GGCC	9 cut(s)	773, 933, 984, 1026, 1044, 1300, 1541, 1777, 1886
BshNI	GGYRCC	4 cut(s)	704, 746, 777, 2017
BshVI	ATCGAT	1 cut(s)	822
BsiEI	CGRYCG	6 cut(s)	567, 1045, 1119, 1123, 1542, 1887
BsiHKAI	GWGCWC	2 cut(s)	927, 1883
BsiHKCI	CYCGRG	1 cut(s)	1532
BslFI	GGGAC	2 cut(s)	1118, 2050
BsmAI	GTCTC	3 cut(s)	595, 854, 1401
BsmFI	GGGAC	2 cut(s)	1118, 2050
BsnI	GGCC	9 cut(s)	773, 933, 984, 1026, 1044, 1300, 1541, 1777, 1886
Bso31I	GGTCTC	1 cut(s)	1401
BsoBI	CYCGRG	1 cut(s)	1532
Bsp120I	GGGCCC	1 cut(s)	1298
Bsp1286I	GDGCHC	9 cut(s)	307, 768, 780, 927, 1007, 1193, 1302, 1533, 1883
Bsp19I	CCATGG	1 cut(s)	558
Bsp68I	TCGCGA	1 cut(s)	1322
BspACI	CCGC	7 cut(s)	682, 739, 1045, 1429, 1666, 1706, 1973
BspANI	GGCC	9 cut(s)	773, 933, 984, 1026, 1044, 1300, 1541, 1777, 1886
BspCNI	CTCAG	5 cut(s)	452, 638, 877, 1218, 1672
BspDI	ATCGAT	1 cut(s)	822
BspFNI	CGCG	7 cut(s)	1265, 1322, 1429, 1520, 1893, 1895, 1973
BspMI	ACCTGC	1 cut(s)	1348
BspPI	GGATC	6 cut(s)	341, 354, 1279, 1339, 1554, 1567
BspQI	GCTCTTC	1 cut(s)	377
BspT107I	GGYRCC	4 cut(s)	704, 746, 777, 2017
BspTI	CTTAAG	1 cut(s)	1442
BspTNI	GGTCTC	1 cut(s)	1401
BsrFI	RCCGGY	4 cut(s)	701, 849, 1022, 1649
BsrI	ACTGG	3 cut(s)	20, 476, 899
BssAI	RCCGGY	4 cut(s)	701, 849, 1022, 1649
BssHII	GCGCGC	1 cut(s)	1891
BssNI	GRCGYC	4 cut(s)	729, 747, 1011, 1215
BssSI	CACGAG	1 cut(s)	761
BssT1I	CCWWGG	2 cut(s)	486, 558
Bst2BI	CACGAG	1 cut(s)	761
Bst2UI	CCWGG	2 cut(s)	1001, 1082
Bst4CI	ACNGT	7 cut(s)	398, 422, 531, 1117, 1773, 1856, 1999
Bst6I	CTCTTC	3 cut(s)	197, 279, 377
BstACI	GRCGYC	4 cut(s)	729, 747, 1011, 1215
BstAFI	CTTAAG	1 cut(s)	1442
BstBAI	YACGTR	3 cut(s)	596, 635, 971
BstDEI	CTNAG	7 cut(s)	6, 439, 625, 864, 1051, 1205, 1680
BstDSI	CCRYGG	4 cut(s)	558, 768, 928, 1772
BstFNI	CGCG	7 cut(s)	1265, 1322, 1429, 1520, 1893, 1895, 1973
BstH2I	RGCGCY	2 cut(s)	604, 750
BstHHI	GCGC	5 cut(s)	603, 749, 1265, 1893, 1895
BstMAI	GTCTC	3 cut(s)	595, 854, 1401
BstMCI	CGRYCG	6 cut(s)	567, 1045, 1119, 1123, 1542, 1887
BstNI	CCWGG	2 cut(s)	1001, 1082
BstSCI	CCNGG	9 cut(s)	773, 999, 1080, 1086, 1100, 1179, 1272, 1347, 1814
BstSFI	CTRYAG	1 cut(s)	542
BstSLI	GKGCMC	4 cut(s)	307, 780, 1007, 1302
BstUI	CGCG	7 cut(s)	1265, 1322, 1429, 1520, 1893, 1895, 1973
BstV1I	GCAGC	3 cut(s)	399, 541, 563
BstV2I	GAAGAC	1 cut(s)	1071
BstX2I	RGATCY	4 cut(s)	346, 1284, 1559, 1804
BstYI	RGATCY	4 cut(s)	346, 1284, 1559, 1804
BstZI	CGGCCG	3 cut(s)	1042, 1539, 1884
Bsu15I	ATCGAT	1 cut(s)	822
BsuRI	GGCC	9 cut(s)	773, 933, 984, 1026, 1044, 1300, 1541, 1777, 1886
BsuTUI	ATCGAT	1 cut(s)	822
BtgI	CCRYGG	4 cut(s)	558, 768, 928, 1772
BtgZI	GCGATG	2 cut(s)	928, 1614
BtrI	CACGTC	4 cut(s)	518, 571, 1279, 1693
BtsIMutI	CAGTG	2 cut(s)	418, 536
BtuMI	TCGCGA	1 cut(s)	1322
BveI	ACCTGC	1 cut(s)	1348
CfoI	GCGC	5 cut(s)	603, 749, 1265, 1893, 1895
Cfr10I	RCCGGY	4 cut(s)	701, 849, 1022, 1649
Cfr13I	GGNCC	7 cut(s)	18, 369, 1084, 1105, 1298, 1299, 1351
ClaI	ATCGAT	1 cut(s)	822
CseI	GACGC	3 cut(s)	718, 1000, 1884
CsiI	ACCWGGT	1 cut(s)	1080
Csp6I	GTAC	3 cut(s)	1078, 1852, 2018
CviAII	CATG	7 cut(s)	559, 802, 1057, 1306, 1313, 1567, 2033
CviQI	GTAC	3 cut(s)	1078, 1852, 2018
DdeI	CTNAG	7 cut(s)	6, 439, 625, 864, 1051, 1205, 1680
DinI	GGCGCC	1 cut(s)	748
DraI	TTTAAA	1 cut(s)	1236
DrdI	GACNNNNNNGTC	2 cut(s)	635, 1423
DriI	GACNNNNNGTC	1 cut(s)	1183
DseDI	GACNNNNNNGTC	2 cut(s)	635, 1423
EaeI	YGGCCR	6 cut(s)	771, 931, 1042, 1539, 1775, 1884
EagI	CGGCCG	3 cut(s)	1042, 1539, 1884
Eam1104I	CTCTTC	3 cut(s)	197, 279, 377
Eam1105I	GACNNNNNGTC	1 cut(s)	1183
EarI	CTCTTC	3 cut(s)	197, 279, 377
EciI	GGCGGA	1 cut(s)	671
Ecl136II	GAGCTC	1 cut(s)	925
EclXI	CGGCCG	3 cut(s)	1042, 1539, 1884
Eco130I	CCWWGG	2 cut(s)	486, 558
Eco147I	AGGCCT	1 cut(s)	984
Eco24I	GRGCYC	5 cut(s)	768, 927, 1193, 1302, 1533
Eco31I	GGTCTC	1 cut(s)	1401
Eco47I	GGWCC	5 cut(s)	18, 369, 1084, 1105, 1351
Eco52I	CGGCCG	3 cut(s)	1042, 1539, 1884
Eco53kI	GAGCTC	1 cut(s)	925
Eco57I	CTGAAG	1 cut(s)	1943
Eco72I	CACGTG	3 cut(s)	596, 635, 971
Eco88I	CYCGRG	1 cut(s)	1532
EcoICRI	GAGCTC	1 cut(s)	925
EcoO109I	RGGNCCY	2 cut(s)	1105, 1298
EcoRI	GAATTC	1 cut(s)	1437
EcoRII	CCWGG	2 cut(s)	999, 1080
EcoT14I	CCWWGG	2 cut(s)	486, 558
EcoT22I	ATGCAT	2 cut(s)	315, 1314
EcoT38I	GRGCYC	5 cut(s)	768, 927, 1193, 1302, 1533
EgeI	GGCGCC	1 cut(s)	748
EheI	GGCGCC	1 cut(s)	748
ErhI	CCWWGG	2 cut(s)	486, 558
FaeI	CATG	7 cut(s)	562, 805, 1060, 1309, 1316, 1570, 2036
FalI	AAGNNNNNCTT	2 cut(s)	1791, 1823
FaqI	GGGAC	2 cut(s)	1118, 2050
FatI	CATG	7 cut(s)	558, 801, 1056, 1305, 1312, 1566, 2032
FauI	CCCGC	2 cut(s)	1659, 1699
FbaI	TGATCA	1 cut(s)	1383
FblI	GTMKAC	4 cut(s)	732, 1032, 1176, 1658
Fnu4HI	GCNGC	5 cut(s)	388, 552, 555, 1045, 1974
FriOI	GRGCYC	5 cut(s)	768, 927, 1193, 1302, 1533
Fsp4HI	GCNGC	5 cut(s)	388, 552, 555, 1045, 1974
FspBI	CTAG	1 cut(s)	1028
GlaI	GCGC	5 cut(s)	602, 748, 1264, 1892, 1894
GluI	GCNGC	5 cut(s)	388, 552, 555, 1045, 1974
GsaI	CCCAGC	1 cut(s)	1148
GsuI	CTGGAG	1 cut(s)	483
HaeII	RGCGCY	2 cut(s)	604, 750
HaeIII	GGCC	9 cut(s)	773, 933, 984, 1026, 1044, 1300, 1541, 1777, 1886
HgaI	GACGC	3 cut(s)	718, 1000, 1884
HhaI	GCGC	5 cut(s)	603, 749, 1265, 1893, 1895
Hin1I	GRCGYC	4 cut(s)	729, 747, 1011, 1215
Hin1II	CATG	7 cut(s)	562, 805, 1060, 1309, 1316, 1570, 2036
Hin6I	GCGC	5 cut(s)	601, 747, 1263, 1891, 1893
HinP1I	GCGC	5 cut(s)	601, 747, 1263, 1891, 1893
HincII	GTYRAC	6 cut(s)	270, 1152, 1177, 1483, 1659, 1969
HindII	GTYRAC	6 cut(s)	270, 1152, 1177, 1483, 1659, 1969
HpaI	GTTAAC	1 cut(s)	1969
HphI	GGTGA	8 cut(s)	42, 198, 847, 1318, 1726, 1804, 1834, 1871
Hpy188III	TCNNGA	5 cut(s)	1321, 1342, 1490, 1513, 1931
HpyAV	CCTTC	5 cut(s)	34, 572, 1901, 2019, 2047
HpyCH4III	ACNGT	7 cut(s)	398, 422, 531, 1117, 1773, 1856, 1999
HpyCH4V	TGCA	4 cut(s)	313, 720, 1312, 1566
HpyF3I	CTNAG	7 cut(s)	6, 439, 625, 864, 1051, 1205, 1680
Hsp92I	GRCGYC	4 cut(s)	729, 747, 1011, 1215
Hsp92II	CATG	7 cut(s)	562, 805, 1060, 1309, 1316, 1570, 2036
HspAI	GCGC	5 cut(s)	601, 747, 1263, 1891, 1893
KasI	GGCGCC	1 cut(s)	746
KpnI	GGTACC	1 cut(s)	2021
KroI	GCCGGC	1 cut(s)	1022
KroNI	GCCGGC	1 cut(s)	1024
Ksp22I	TGATCA	1 cut(s)	1383
KspAI	GTTAAC	1 cut(s)	1969
LguI	GCTCTTC	1 cut(s)	377
LmnI	GCTCC	6 cut(s)	581, 664, 670, 930, 1528, 1954
Lsp1109I	GCAGC	3 cut(s)	399, 541, 563
LweI	GCATC	4 cut(s)	322, 828, 951, 1299
MabI	ACCWGGT	1 cut(s)	1080
MaeI	CTAG	1 cut(s)	1028
MaeIII	GTNAC	5 cut(s)	697, 1090, 1124, 1910, 2004
MfeI	CAATTG	1 cut(s)	1761
MflI	RGATCY	4 cut(s)	346, 1284, 1559, 1804
MhlI	GDGCHC	9 cut(s)	307, 768, 780, 927, 1007, 1193, 1302, 1533, 1883
MluCI	AATT	8 cut(s)	403, 480, 535, 652, 1437, 1639, 1696, 1761
MluI	ACGCGT	1 cut(s)	1518
Mly113I	GGCGCC	1 cut(s)	747
MlyI	GAGTC	9 cut(s)	856, 1193, 1478, 1544, 1564, 1574, 1654, 1664, 1691
MmeI	TCCRAC	5 cut(s)	1041, 1665, 1878, 1932, 1968
Mph1103I	ATGCAT	2 cut(s)	315, 1314
MroNI	GCCGGC	1 cut(s)	1022
MseI	TTAA	5 cut(s)	219, 723, 1235, 1443, 1968
MslI	CAYNNNNRTG	1 cut(s)	1307
MspA1I	CMGCKG	2 cut(s)	554, 1144
MspCI	CTTAAG	1 cut(s)	1442
MspR9I	CCNGG	9 cut(s)	775, 1001, 1082, 1088, 1102, 1181, 1274, 1349, 1816
MunI	CAATTG	1 cut(s)	1761
MvaI	CCWGG	2 cut(s)	1001, 1082
MvnI	CGCG	7 cut(s)	1265, 1322, 1429, 1520, 1893, 1895, 1973
NaeI	GCCGGC	1 cut(s)	1024
NarI	GGCGCC	1 cut(s)	747
NciI	CCSGG	7 cut(s)	775, 1088, 1102, 1181, 1274, 1349, 1816
NcoI	CCATGG	1 cut(s)	558
NgoMIV	GCCGGC	1 cut(s)	1022
NlaIII	CATG	7 cut(s)	562, 805, 1060, 1309, 1316, 1570, 2036
NmeAIII	GCCGAG	4 cut(s)	1567, 1642, 1902, 1912
NmuCI	GTSAC	1 cut(s)	1090
NruI	TCGCGA	1 cut(s)	1322
NsiI	ATGCAT	2 cut(s)	315, 1314
PaqCI	CACCTGC	1 cut(s)	1348
PauI	GCGCGC	1 cut(s)	1891
PceI	AGGCCT	1 cut(s)	984
PciSI	GCTCTTC	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	6 cut(s)	573, 732, 1125, 1326, 1764, 1932
PdiI	GCCGGC	1 cut(s)	1024
PfeI	GAWTC	2 cut(s)	824, 2048
PflFI	GACNNNGTC	1 cut(s)	572
PflMI	CCANNNNNTGG	1 cut(s)	1360
PfoI	TCCNGGA	1 cut(s)	1347
PkrI	GCNGC	5 cut(s)	389, 553, 556, 1046, 1975
Ple19I	CGATCG	1 cut(s)	567
PleI	GAGTC	9 cut(s)	856, 1192, 1478, 1543, 1564, 1574, 1654, 1663, 1690
PluTI	GGCGCC	1 cut(s)	750
PmaCI	CACGTG	3 cut(s)	596, 635, 971
PmlI	CACGTG	3 cut(s)	596, 635, 971
PpsI	GAGTC	9 cut(s)	856, 1192, 1478, 1543, 1564, 1574, 1654, 1663, 1690
Ppu21I	YACGTR	3 cut(s)	596, 635, 971
PpuMI	RGGWCCY	1 cut(s)	1105
Psp124BI	GAGCTC	1 cut(s)	927
Psp5II	RGGWCCY	1 cut(s)	1105
Psp6I	CCWGG	2 cut(s)	999, 1080
PspCI	CACGTG	3 cut(s)	596, 635, 971
PspFI	CCCAGC	1 cut(s)	1144
PspGI	CCWGG	2 cut(s)	999, 1080
PspOMI	GGGCCC	1 cut(s)	1298
PspPI	GGNCC	7 cut(s)	18, 369, 1084, 1105, 1298, 1299, 1351
PspPPI	RGGWCCY	1 cut(s)	1105
PsuI	RGATCY	4 cut(s)	346, 1284, 1559, 1804
PsyI	GACNNNGTC	1 cut(s)	572
PteI	GCGCGC	1 cut(s)	1891
PvuI	CGATCG	1 cut(s)	567
PvuII	CAGCTG	2 cut(s)	554, 1144
RruI	TCGCGA	1 cut(s)	1322
RsaI	GTAC	3 cut(s)	1079, 1853, 2019
RsaNI	GTAC	3 cut(s)	1078, 1852, 2018
RseI	CAYNNNNRTG	1 cut(s)	1307
SacI	GAGCTC	1 cut(s)	927
SalI	GTCGAC	2 cut(s)	1175, 1657
SapI	GCTCTTC	1 cut(s)	377
SaqAI	TTAA	5 cut(s)	219, 723, 1235, 1443, 1968
SatI	GCNGC	5 cut(s)	388, 552, 555, 1045, 1974
Sau96I	GGNCC	7 cut(s)	18, 369, 1084, 1105, 1298, 1299, 1351
SchI	GAGTC	9 cut(s)	856, 1193, 1478, 1544, 1564, 1574, 1654, 1664, 1691
ScrFI	CCNGG	9 cut(s)	775, 1001, 1082, 1088, 1102, 1181, 1274, 1349, 1816
SduI	GDGCHC	9 cut(s)	307, 768, 780, 927, 1007, 1193, 1302, 1533, 1883
SexAI	ACCWGGT	1 cut(s)	1080
SfaNI	GCATC	4 cut(s)	322, 828, 951, 1299
SfcI	CTRYAG	1 cut(s)	542
SfoI	GGCGCC	1 cut(s)	748
SinI	GGWCC	5 cut(s)	18, 369, 1084, 1105, 1351
SmiMI	CAYNNNNRTG	1 cut(s)	1307
SmlI	CTYRAG	1 cut(s)	1442
SmoI	CTYRAG	1 cut(s)	1442
Sse9I	AATT	8 cut(s)	403, 480, 535, 652, 1437, 1639, 1696, 1761
SseBI	AGGCCT	1 cut(s)	984
SsiI	CCGC	7 cut(s)	682, 739, 1045, 1429, 1666, 1706, 1973
SspDI	GGCGCC	1 cut(s)	746
SspMI	CTAG	1 cut(s)	1028
SstI	GAGCTC	1 cut(s)	927
StuI	AGGCCT	1 cut(s)	984
StyD4I	CCNGG	9 cut(s)	773, 999, 1080, 1086, 1100, 1179, 1272, 1347, 1814
StyI	CCWWGG	2 cut(s)	486, 558
TaaI	ACNGT	7 cut(s)	398, 422, 531, 1117, 1773, 1856, 1999
TaqII	GACCGA	1 cut(s)	1109
TasI	AATT	8 cut(s)	403, 480, 535, 652, 1437, 1639, 1696, 1761
TauI	GCSGC	2 cut(s)	1047, 1976
TfiI	GAWTC	2 cut(s)	824, 2048
Tru1I	TTAA	5 cut(s)	219, 723, 1235, 1443, 1968
Tru9I	TTAA	5 cut(s)	219, 723, 1235, 1443, 1968
TscAI	CASTG	2 cut(s)	425, 536
TseFI	GTSAC	1 cut(s)	1090
TseI	GCWGC	3 cut(s)	387, 551, 554
Tsp45I	GTSAC	1 cut(s)	1090
TspDTI	ATGAA	3 cut(s)	324, 1997, 2021
TspGWI	ACGGA	2 cut(s)	235, 237
TspRI	CASTG	2 cut(s)	425, 536
Tth111I	GACNNNGTC	1 cut(s)	572
Van91I	CCANNNNNTGG	1 cut(s)	1360
Vha464I	CTTAAG	1 cut(s)	1442
VpaK11BI	GGWCC	5 cut(s)	18, 369, 1084, 1105, 1351
XapI	RAATTY	5 cut(s)	403, 535, 1437, 1639, 1696
XmiI	GTMKAC	4 cut(s)	732, 1032, 1176, 1658
XspI	CTAG	1 cut(s)	1028
ZraI	GACGTC	1 cut(s)	1216
Zsp2I	ATGCAT	2 cut(s)	315, 1314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.