Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013631

Physical Location & Seq

Genomic Coordinates Forward (+)

3589559 .. 3590937

Gene Structure 1379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06241.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACGAAAAAGGCTTATTGCGGCTTCATAACTGTTGCTCCGGCGAGAAACATCAACGCCGACGAAATGCAAAGCCAGGTGAAGTCATCGTACAACGACGAGTACTGTGGGGCTTCAAGTAACTTCACTAAAAGTTACAAGGAAGGAGAGTTCGTGGACAACCGCAGTGGGCAGTCCGGCTACAAACAAGAGGCCAAGTACACCTCGATAGACAAGTATGTCGACAAAACTCAGGGATACACCACCGAGTACAAAACACAGCTCAAGGTCACCAAGTCTGTCTACACTAAGAAGAGTGCTACAGCAAGCAAGCAGGGCCGAGGTTTTGAACCCTCCGCCCTAGCCCGGCCTTATGCCCTAAGGGCCGGGCCGAGATGGGCTTTTCTATGGGTCGGCCAAGCTTTGGCCATTCCGGACGATGGGCTGCCCACGGGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.21

Weight (kDa)

9.34

Isoelectric Point (pI)

30.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013631)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06241
prunus_persica	Prupe.6G110500_v2.0.a1 Prupe.6G110700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0057071
rosa_laevigata	RLG00000008979 RLG00000035149
rosa_multiflora	Rmu_sc0009185.1_g000027
rosa_roxburghii	Rroxscaffold_1G00023130 Rroxscaffold_5G00348010 Rroxscaffold_5G00348020
rosa_rugosa	Rorug04G0041800 Rorug04G0042100.1 Rorug05G0305500
rosa_samantha	Rh5AG374800 Rh5BG385900 Rh5CG409400 Rh5DG399600
rosa_wichuraiana	Rw5G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AccB7I	CCANNNNNTGG	1 cut(s)	403
AccI	GTMKAC	2 cut(s)	222, 282
AccIII	TCCGGA	1 cut(s)	412
AciI	CCGC	3 cut(s)	21, 163, 336
AcoI	YGGCCR	2 cut(s)	394, 405
AfaI	GTAC	4 cut(s)	92, 104, 200, 251
AfiI	CCNNNNNNNGG	3 cut(s)	345, 403, 419
AgsI	TTSAA	2 cut(s)	117, 329
AjnI	CCWGG	1 cut(s)	75
AloI	GAACNNNNNNTCC	2 cut(s)	134, 166
AluBI	AGCT	2 cut(s)	262, 401
AluI	AGCT	2 cut(s)	262, 401
Aor13HI	TCCGGA	1 cut(s)	412
AoxI	GGCC	7 cut(s)	192, 316, 347, 363, 368, 394, 405
ApeKI	GCWGC	1 cut(s)	424
AspS9I	GGNCC	3 cut(s)	316, 363, 368
AsuC2I	CCSGG	2 cut(s)	346, 367
AsuHPI	GGTGA	2 cut(s)	91, 262
AxyI	CCTNAGG	1 cut(s)	359
BalI	TGGCCA	1 cut(s)	407
BarI	GAAGNNNNNNTAC	2 cut(s)	74, 106
BbvI	GCAGC	1 cut(s)	411
BccI	CCATC	2 cut(s)	369, 413
BciT130I	CCWGG	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	230
BcnI	CCSGG	2 cut(s)	346, 367
BfaI	CTAG	1 cut(s)	341
BfmI	CTRYAG	1 cut(s)	300
BfuI	GTATCC	1 cut(s)	230
BglI	GCCNNNNNGGC	1 cut(s)	362
BisI	GCNGC	2 cut(s)	22, 425
BlsI	GCNGC	2 cut(s)	23, 426
BmcAI	AGTACT	1 cut(s)	104
Bme1390I	CCNGG	3 cut(s)	77, 346, 367
BmgT120I	GGNCC	3 cut(s)	316, 363, 368
BmrFI	CCNGG	3 cut(s)	77, 346, 367
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	2 cut(s)	346, 367
BsaJI	CCNNGG	2 cut(s)	319, 429
BsaWI	WCCGGW	1 cut(s)	412
BsaXI	ACNNNNNCTCC	4 cut(s)	22, 52, 138, 168
Bsc4I	CCNNNNNNNGG	3 cut(s)	345, 403, 419
Bse21I	CCTNAGG	1 cut(s)	359
BseAI	TCCGGA	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	319, 429
BseLI	CCNNNNNNNGG	3 cut(s)	345, 403, 419
BseMII	CTCAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	411
BshFI	GGCC	7 cut(s)	194, 318, 349, 365, 370, 396, 407
BsiSI	CCGG	5 cut(s)	41, 177, 346, 366, 413
BslI	CCNNNNNNNGG	3 cut(s)	345, 403, 419
BsnI	GGCC	7 cut(s)	194, 318, 349, 365, 370, 396, 407
Bsp13I	TCCGGA	1 cut(s)	412
BspACI	CCGC	3 cut(s)	21, 163, 336
BspANI	GGCC	7 cut(s)	194, 318, 349, 365, 370, 396, 407
BspCNI	CTCAG	1 cut(s)	244
BspEI	TCCGGA	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	319, 429
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	34, 107
Bst6I	CTCTTC	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	307, 311
BstDEI	CTNAG	3 cut(s)	231, 288, 359
BstDSI	CCRYGG	1 cut(s)	429
BstEII	GGTNACC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 362
BstNI	CCWGG	1 cut(s)	77
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	3 cut(s)	75, 344, 365
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	411
Bsu36I	CCTNAGG	1 cut(s)	359
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	7 cut(s)	194, 318, 349, 365, 370, 396, 407
BtgI	CCRYGG	1 cut(s)	429
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	2 cut(s)	307, 311
Cfr13I	GGNCC	3 cut(s)	316, 363, 368
Csp6I	GTAC	4 cut(s)	91, 103, 199, 250
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviQI	GTAC	4 cut(s)	91, 103, 199, 250
DdeI	CTNAG	3 cut(s)	231, 288, 359
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	2 cut(s)	394, 405
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
EciI	GGCGGA	1 cut(s)	325
Eco81I	CCTNAGG	1 cut(s)	359
Eco91I	GGTNACC	1 cut(s)	268
EcoO65I	GGTNACC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	75
FaiI	YATR	4 cut(s)	29, 219, 354, 388
FblI	GTMKAC	2 cut(s)	222, 282
Fnu4HI	GCNGC	2 cut(s)	22, 425
Fsp4HI	GCNGC	2 cut(s)	22, 425
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	2 cut(s)	22, 425
HaeIII	GGCC	7 cut(s)	194, 318, 349, 365, 370, 396, 407
HapII	CCGG	5 cut(s)	41, 177, 346, 366, 413
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	399
HpaII	CCGG	5 cut(s)	41, 177, 346, 366, 413
HphI	GGTGA	2 cut(s)	91, 262
Hpy166II	GTNNAC	4 cut(s)	157, 201, 223, 283
Hpy188III	TCNNGA	1 cut(s)	413
Hpy8I	GTNNAC	4 cut(s)	157, 201, 223, 283
Hpy99I	CGWCG	2 cut(s)	65, 101
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	2 cut(s)	34, 107
HpyCH4V	TGCA	1 cut(s)	70
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 362
HpyF3I	CTNAG	3 cut(s)	231, 288, 359
Kpn2I	TCCGGA	1 cut(s)	412
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	9 cut(s)	54, 62, 89, 190, 218, 299, 359, 379, 426
Lsp1109I	GCAGC	1 cut(s)	411
MaeI	CTAG	1 cut(s)	341
MaeIII	GTNAC	3 cut(s)	119, 134, 268
MboII	GAAGA	1 cut(s)	304
MlsI	TGGCCA	1 cut(s)	407
MluNI	TGGCCA	1 cut(s)	407
MnlI	CCTC	4 cut(s)	184, 214, 314, 343
Mox20I	TGGCCA	1 cut(s)	407
MroI	TCCGGA	1 cut(s)	412
MscI	TGGCCA	1 cut(s)	407
Msp20I	TGGCCA	1 cut(s)	407
MspI	CCGG	5 cut(s)	41, 177, 346, 366, 413
MspR9I	CCNGG	3 cut(s)	77, 346, 367
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	315, 362
NciI	CCSGG	2 cut(s)	346, 367
NmeAIII	GCCGAG	2 cut(s)	344, 396
NmuCI	GTSAC	1 cut(s)	268
PflMI	CCANNNNNTGG	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	23, 426
Psp6I	CCWGG	1 cut(s)	75
PspEI	GGTNACC	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	75
PspPI	GGNCC	3 cut(s)	316, 363, 368
RsaI	GTAC	4 cut(s)	92, 104, 200, 251
RsaNI	GTAC	4 cut(s)	91, 103, 199, 250
SalI	GTCGAC	1 cut(s)	221
SatI	GCNGC	2 cut(s)	22, 425
Sau96I	GGNCC	3 cut(s)	316, 363, 368
ScaI	AGTACT	1 cut(s)	104
ScrFI	CCNGG	3 cut(s)	77, 346, 367
SetI	ASST	6 cut(s)	81, 206, 264, 270, 325, 403
SfcI	CTRYAG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SsiI	CCGC	3 cut(s)	21, 163, 336
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	3 cut(s)	75, 344, 365
TaaI	ACNGT	2 cut(s)	34, 107
TaqI	TCGA	2 cut(s)	206, 222
TatI	WGTACW	3 cut(s)	102, 198, 249
TauI	GCSGC	1 cut(s)	24
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	16
TspRI	CASTG	1 cut(s)	172
Van91I	CCANNNNNTGG	1 cut(s)	403
XmiI	GTMKAC	2 cut(s)	222, 282
XspI	CTAG	1 cut(s)	341
ZrmI	AGTACT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.