Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0013631

Physical Location & Seq

Genomic Coordinates Reverse (-)

60963646 .. 60964026

Gene Structure 381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G035290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTCGAAAGCGCCTGAAACACACTATCATTACTGTGGAGTGATCGAACGGGTGCCCTCGAGTTCGAGCAAGAGATCTTCTCAGTTCAGTGAGTCCACACAAGTGGAGAAGAAAGTTCGAGCTAGCTACAAGGATGAGTATGGTGGAGGTTGGAGCAAGTTTACTGAGAGCTACAAGGCGCAAGAGTACGTGGACAAGAAAACTGGAGGCATGGGTTACAAGCAAGAAGCTAAGTATACCTCTACTGACAAGTATGTGGACAATGAGCAAGGCTACACCACCGAGTATCATACCCAGGTGAAGATTCAGAAGTCTGTTTACCCCAACAAGAGCTCAACCAGCAAGTCCAAGAACAACAAGGATAGCATCGGCTATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

14.44

Weight (kDa)

9.2

Isoelectric Point (pI)

58.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013631)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06241
prunus_persica	Prupe.6G110500_v2.0.a1 Prupe.6G110700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0057071
rosa_laevigata	RLG00000008979 RLG00000035149
rosa_multiflora	Rmu_sc0009185.1_g000027
rosa_roxburghii	Rroxscaffold_1G00023130 Rroxscaffold_5G00348010 Rroxscaffold_5G00348020
rosa_rugosa	Rorug04G0041800 Rorug04G0042100.1 Rorug05G0305500
rosa_samantha	Rh5AG374800 Rh5BG385900 Rh5CG409400 Rh5DG399600
rosa_wichuraiana	Rw5G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	52
AccI	GTMKAC	1 cut(s)	236
AfaI	GTAC	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	294
AleI	CACNNNNGTG	1 cut(s)	101
AluBI	AGCT	5 cut(s)	122, 126, 171, 230, 333
AluI	AGCT	5 cut(s)	122, 126, 171, 230, 333
Alw21I	GWGCWC	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	58
AspLEI	GCGC	2 cut(s)	13, 181
AsuHPI	GGTGA	1 cut(s)	310
AsuNHI	GCTAGC	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	335
BarI	GAAGNNNNNNTAC	2 cut(s)	302, 334
Bbv12I	GWGCWC	1 cut(s)	335
BciT130I	CCWGG	1 cut(s)	296
BfaI	CTAG	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	14
BglII	AGATCT	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	296
BmeT110I	CYCGRG	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	375
BmtI	GCTAGC	1 cut(s)	126
BplI	GAGNNNNNCTC	2 cut(s)	64, 96
BpmI	CTGGAG	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	139
BseMII	CTCAG	2 cut(s)	95, 156
BseNI	ACTGG	1 cut(s)	208
BseSI	GKGCMC	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	57, 335
Bsp143I	GATC	2 cut(s)	42, 74
BspCNI	CTCAG	2 cut(s)	94, 157
BspLI	GGNNCC	1 cut(s)	54
BspOI	GCTAGC	1 cut(s)	126
BspT107I	GGYRCC	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	2 cut(s)	42, 74
BssNAI	GTATAC	1 cut(s)	237
Bst1107I	GTATAC	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	35
BstBAI	YACGTR	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	3 cut(s)	81, 165, 231
BstF5I	GGATG	1 cut(s)	139
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	2 cut(s)	13, 181
BstKTI	GATC	2 cut(s)	45, 77
BstMBI	GATC	2 cut(s)	42, 74
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	74
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	74
BstZ17I	GTATAC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	124
CfoI	GCGC	2 cut(s)	13, 181
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	7 cut(s)	122, 126, 171, 230, 273, 333, 372
CviKI_1	RGCY	7 cut(s)	122, 126, 171, 230, 273, 333, 372
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	3 cut(s)	81, 165, 231
DpnI	GATC	2 cut(s)	44, 76
DpnII	GATC	2 cut(s)	42, 74
Ecl136II	GAGCTC	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	58
EcoICRI	GAGCTC	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	335
FaeI	CATG	1 cut(s)	214
FaiI	YATR	5 cut(s)	141, 212, 237, 255, 291
FatI	CATG	1 cut(s)	210
FblI	GTMKAC	1 cut(s)	236
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	335
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	2 cut(s)	12, 180
GsuI	CTGGAG	1 cut(s)	225
HaeII	RGCGCY	1 cut(s)	14
HhaI	GCGC	2 cut(s)	13, 181
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	2 cut(s)	11, 179
HinP1I	GCGC	2 cut(s)	11, 179
HinfI	GANTC	2 cut(s)	92, 304
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	6 cut(s)	96, 162, 193, 237, 259, 319
Hpy188I	TCNGA	1 cut(s)	309
Hpy8I	GTNNAC	6 cut(s)	96, 162, 193, 237, 259, 319
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpyF3I	CTNAG	3 cut(s)	81, 165, 231
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	2 cut(s)	11, 179
Kzo9I	GATC	2 cut(s)	42, 74
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	5 cut(s)	27, 189, 281, 308, 352
LweI	GCATC	1 cut(s)	375
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	2 cut(s)	44, 76
MboI	GATC	2 cut(s)	42, 74
MboII	GAAGA	3 cut(s)	69, 121, 313
MflI	RGATCY	1 cut(s)	74
MhlI	GDGCHC	2 cut(s)	57, 335
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	4 cut(s)	67, 140, 200, 250
MseI	TTAA	1 cut(s)	379
MslI	CAYNNNNRTG	2 cut(s)	33, 101
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	339
NdeII	GATC	2 cut(s)	42, 74
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	54
OliI	CACNNNNGTG	1 cut(s)	101
PaeR7I	CTCGAG	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Ppu21I	YACGTR	1 cut(s)	190
Psp124BI	GAGCTC	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	54
PspXI	VCTCGAGB	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	74
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	2 cut(s)	33, 101
SacI	GAGCTC	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	379
Sau3AI	GATC	2 cut(s)	42, 74
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	2 cut(s)	57, 335
SetI	ASST	9 cut(s)	124, 128, 151, 173, 192, 232, 242, 300, 335
SfaNI	GCATC	1 cut(s)	375
Sfr274I	CTCGAG	1 cut(s)	58
SlaI	CTCGAG	1 cut(s)	58
SmiMI	CAYNNNNRTG	2 cut(s)	33, 101
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
SspMI	CTAG	1 cut(s)	123
SstI	GAGCTC	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	5 cut(s)	5, 45, 59, 65, 118
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	1 cut(s)	379
Tru9I	TTAA	1 cut(s)	379
TscAI	CASTG	1 cut(s)	94
TspRI	CASTG	1 cut(s)	94
XhoI	CTCGAG	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	236
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.