Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0013631

Physical Location & Seq

Genomic Coordinates Reverse (-)

19883754 .. 19886077

Gene Structure 2324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCCGAAGAAGCCTGCAACCCATTACTGTGAATATGCAGTGGTGCAGCCCTCGAGCAACATTGTGTCGAATGAAATACAGAACAAGGTGAGGTCTTCCTACAACGACCAGTACAGTAGATCTTCGAGCAATGTTACCCGAAGCTACAAGGCGTCTGAGTACATGGCGGACAAGAGCACCGGGCAGATGGGGTGTTTGAGAAGCTTGGACCAAGCTTATACGTACGATTTTCTCAAGAAAAATAGTTACCGCCGCTCATTTCCCATTGATCTTGTTCGTGTGATTGGCAGACAACTGTTGGAATGTGTAGCATACATATCTAGGTGGAACGCGCCTCATGCGCCTGTGATTAAAAAAGAAAAGAAAAAAGAATTCACAGAAACCTCGTGCCCTAAGGCAACAACTGTTGTGGCCGCGCTCGTCACCGGAGCTCCTCCTCGCCATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046483 GO:0046777 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

149

Amino Acids

16.83

Weight (kDa)

9.62

Isoelectric Point (pI)

74.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013631)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06241
prunus_persica	Prupe.6G110500_v2.0.a1 Prupe.6G110700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0057071
rosa_laevigata	RLG00000008979 RLG00000035149
rosa_multiflora	Rmu_sc0009185.1_g000027
rosa_roxburghii	Rroxscaffold_1G00023130 Rroxscaffold_5G00348010 Rroxscaffold_5G00348020
rosa_rugosa	Rorug04G0041800 Rorug04G0042100.1 Rorug05G0305500
rosa_samantha	Rh5AG374800 Rh5BG385900 Rh5CG409400 Rh5DG399600
rosa_wichuraiana	Rw5G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	255
AccII	CGCG	2 cut(s)	332, 416
AciI	CCGC	4 cut(s)	167, 250, 253, 414
AcoI	YGGCCR	1 cut(s)	411
AcsI	RAATTY	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	152
AfaI	GTAC	3 cut(s)	113, 161, 224
AfiI	CCNNNNNNNGG	1 cut(s)	443
AluBI	AGCT	4 cut(s)	144, 204, 215, 431
AluI	AGCT	4 cut(s)	144, 204, 215, 431
Alw21I	GWGCWC	2 cut(s)	179, 433
Ama87I	CYCGRG	1 cut(s)	52
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	371
AspLEI	GCGC	3 cut(s)	334, 343, 418
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	100, 415
AvaI	CYCGRG	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	208
AxyI	CCTNAGG	1 cut(s)	393
BaeGI	GKGCMC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	433
BauI	CACGAG	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	2 cut(s)	179, 433
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	181
BfaI	CTAG	1 cut(s)	321
BglII	AGATCT	1 cut(s)	119
BisI	GCNGC	3 cut(s)	47, 253, 414
BlsI	GCNGC	3 cut(s)	48, 254, 415
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	181
BsaAI	YACGTR	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	442
BsaWI	WCCGGW	1 cut(s)	425
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	109
Bse21I	CCTNAGG	1 cut(s)	393
Bse3DI	GCAATG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	442
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	2 cut(s)	423, 426
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	65
Bsh1236I	CGCG	2 cut(s)	332, 416
BshFI	GGCC	1 cut(s)	413
BsiHKAI	GWGCWC	2 cut(s)	179, 433
BsiHKCI	CYCGRG	1 cut(s)	52
BsiSI	CCGG	2 cut(s)	180, 426
BsiWI	CGTACG	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	443
BsnI	GGCC	1 cut(s)	413
BsoBI	CYCGRG	1 cut(s)	52
Bsp1286I	GDGCHC	3 cut(s)	179, 392, 433
Bsp143I	GATC	2 cut(s)	119, 268
Bsp19I	CCATGG	1 cut(s)	442
BspACI	CCGC	4 cut(s)	167, 250, 253, 414
BspANI	GGCC	1 cut(s)	413
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	2 cut(s)	332, 416
BsrBI	CCGCTC	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	442
BssMI	GATC	2 cut(s)	119, 268
BssNI	GRCGYC	1 cut(s)	152
BssSI	CACGAG	1 cut(s)	385
BssT1I	CCWWGG	1 cut(s)	442
Bst2BI	CACGAG	1 cut(s)	385
Bst4CI	ACNGT	4 cut(s)	29, 116, 297, 406
BstACI	GRCGYC	1 cut(s)	152
BstBAI	YACGTR	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	156, 393
BstDSI	CCRYGG	1 cut(s)	442
BstFNI	CGCG	2 cut(s)	332, 416
BstHHI	GCGC	3 cut(s)	334, 343, 418
BstKTI	GATC	2 cut(s)	122, 271
BstMBI	GATC	2 cut(s)	119, 268
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 338, 340
BstSCI	CCNGG	1 cut(s)	179
BstSLI	GKGCMC	1 cut(s)	392
BstSNI	TACGTA	1 cut(s)	222
BstUI	CGCG	2 cut(s)	332, 416
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
Bsu36I	CCTNAGG	1 cut(s)	393
BsuRI	GGCC	1 cut(s)	413
BtgI	CCRYGG	1 cut(s)	442
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	15
CfoI	GCGC	3 cut(s)	334, 343, 418
Cfr13I	GGNCC	1 cut(s)	208
CseI	GACGC	1 cut(s)	141
Csp6I	GTAC	3 cut(s)	112, 160, 223
CspCI	CAANNNNNGTGG	2 cut(s)	390, 425
CviAII	CATG	3 cut(s)	163, 338, 443
CviJI	RGCY	7 cut(s)	13, 49, 144, 204, 215, 413, 431
CviKI_1	RGCY	7 cut(s)	13, 49, 144, 204, 215, 413, 431
CviQI	GTAC	3 cut(s)	112, 160, 223
DdeI	CTNAG	2 cut(s)	156, 393
DpnI	GATC	2 cut(s)	121, 270
DpnII	GATC	2 cut(s)	119, 268
EaeI	YGGCCR	1 cut(s)	411
EciI	GGCGGA	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	431
Eco105I	TACGTA	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	431
Eco81I	CCTNAGG	1 cut(s)	393
Eco88I	CYCGRG	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	431
EcoRI	GAATTC	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	442
EcoT38I	GRGCYC	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	3 cut(s)	166, 341, 446
FaiI	YATR	7 cut(s)	36, 164, 219, 313, 317, 339, 444
FatI	CATG	3 cut(s)	162, 337, 442
Fnu4HI	GCNGC	3 cut(s)	47, 253, 414
FriOI	GRGCYC	1 cut(s)	433
Fsp4HI	GCNGC	3 cut(s)	47, 253, 414
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	3 cut(s)	333, 342, 417
GluI	GCNGC	3 cut(s)	47, 253, 414
HaeIII	GGCC	1 cut(s)	413
HapII	CCGG	2 cut(s)	180, 426
HgaI	GACGC	1 cut(s)	141
HhaI	GCGC	3 cut(s)	334, 343, 418
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	3 cut(s)	166, 341, 446
Hin6I	GCGC	3 cut(s)	332, 341, 416
HinP1I	GCGC	3 cut(s)	332, 341, 416
HindIII	AAGCTT	2 cut(s)	202, 213
HpaII	CCGG	2 cut(s)	180, 426
HphI	GGTGA	2 cut(s)	100, 415
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	235
HpyCH4III	ACNGT	4 cut(s)	29, 116, 297, 406
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	3 cut(s)	17, 38, 46
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 338, 340
HpyF3I	CTNAG	2 cut(s)	156, 393
HpySE526I	ACGT	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	3 cut(s)	166, 341, 446
HspAI	GCGC	3 cut(s)	332, 341, 416
Kzo9I	GATC	2 cut(s)	119, 268
LmnI	GCTCC	2 cut(s)	428, 436
LpnPI	CCDG	5 cut(s)	27, 122, 193, 357, 439
Lsp1109I	GCAGC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	3 cut(s)	133, 245, 421
MalI	GATC	2 cut(s)	121, 270
MbiI	CCGCTC	1 cut(s)	255
MboI	GATC	2 cut(s)	119, 268
MboII	GAAGA	3 cut(s)	19, 87, 114
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	3 cut(s)	179, 392, 433
MluCI	AATT	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	6 cut(s)	61, 84, 345, 394, 444, 447
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	27
MspI	CCGG	2 cut(s)	180, 426
MspR9I	CCNGG	1 cut(s)	181
MvnI	CGCG	2 cut(s)	332, 416
MwoI	GCNNNNNNNGC	3 cut(s)	10, 338, 340
NciI	CCSGG	1 cut(s)	181
NcoI	CCATGG	1 cut(s)	442
NdeII	GATC	2 cut(s)	119, 268
NlaIII	CATG	3 cut(s)	166, 341, 446
NmuCI	GTSAC	1 cut(s)	421
PaeR7I	CTCGAG	1 cut(s)	52
Pfl23II	CGTACG	1 cut(s)	222
PkrI	GCNGC	3 cut(s)	48, 254, 415
Ppu21I	YACGTR	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	433
PspLI	CGTACG	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	208
PspXI	VCTCGAGB	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	119
RsaI	GTAC	3 cut(s)	113, 161, 224
RsaNI	GTAC	3 cut(s)	112, 160, 223
RseI	CAYNNNNRTG	1 cut(s)	27
SacI	GAGCTC	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	3 cut(s)	47, 253, 414
Sau3AI	GATC	2 cut(s)	119, 268
Sau96I	GGNCC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	3 cut(s)	179, 392, 433
SetI	ASST	9 cut(s)	90, 95, 146, 206, 217, 224, 326, 386, 433
Sfr274I	CTCGAG	1 cut(s)	52
SinI	GGWCC	1 cut(s)	208
SlaI	CTCGAG	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	2 cut(s)	52, 233
SmoI	CTYRAG	2 cut(s)	52, 233
SnaBI	TACGTA	1 cut(s)	222
Sse9I	AATT	1 cut(s)	371
SsiI	CCGC	4 cut(s)	167, 250, 253, 414
SspMI	CTAG	1 cut(s)	321
SstI	GAGCTC	1 cut(s)	433
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	4 cut(s)	29, 116, 297, 406
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	3 cut(s)	53, 68, 125
TasI	AATT	1 cut(s)	371
TatI	WGTACW	2 cut(s)	111, 159
TauI	GCSGC	2 cut(s)	255, 416
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	45
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	1 cut(s)	371
XhoI	CTCGAG	1 cut(s)	52
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.