RLG00000008979

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013631
Physical Location & Seq
Forward (+)
44246537 .. 44246878
342 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008979

Sequence Viewer

Length: 342 bp
ATGCCGAAGAAGCCTGCAACCCATTACTGTGAATATGCAGTGGTGCAGCCCTCGAGCAGCACTGTGTCAAATGAAATACAGAACAAGGTGAGGTCTTCCTACAACGACCAGTACAGCAGATCTTCGAGCAATGTTACCCGAAGCTACAAGGCGTCTGAGTACGTGGCGGACAAGAGCACCGGGCAGATGGGTTACAAACAAGAGGCTAAGTACACTTGCACTGATAGGTATGTTGACAAGGAGCAAGGGTTTACCACAGAGTACAAGACGCAGTTGAAGCAGACCAAGTCTGTCTACCCAAACAAGAGCAGCTCCTCCAACAATCGCATCAACTATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.01

Weight (kDa)

9.35

Isoelectric Point (pI)

61.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 294
AciI CCGC 1 cut(s) 167
AcyI GRCGYC 1 cut(s) 152
AfaI GTAC 4 cut(s) 113, 161, 212, 263
AgsI TTSAA 1 cut(s) 277
AluBI AGCT 2 cut(s) 144, 312
AluI AGCT 2 cut(s) 144, 312
Alw21I GWGCWC 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 52
ApeKI GCWGC 3 cut(s) 46, 57, 309
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 3 cut(s) 58, 69, 321
BccI CCATC 1 cut(s) 181
BcnI CCSGG 1 cut(s) 181
BglII AGATCT 1 cut(s) 119
BisI GCNGC 3 cut(s) 47, 58, 310
BlsI GCNGC 3 cut(s) 48, 59, 311
Bme1390I CCNGG 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 181
BsaAI YACGTR 1 cut(s) 163
BsaHI GRCGYC 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bse1I ACTGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 109
BseRI GAGGAG 1 cut(s) 304
BseXI GCAGC 3 cut(s) 58, 69, 321
BsgI GTGCAG 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 1 cut(s) 180
BsoBI CYCGRG 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 1 cut(s) 119
BspACI CCGC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 136
BsrI ACTGG 1 cut(s) 109
BssMI GATC 1 cut(s) 119
BssNI GRCGYC 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 29, 64
BstACI GRCGYC 1 cut(s) 152
BstBAI YACGTR 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 2 cut(s) 156, 207
BstKTI GATC 1 cut(s) 122
BstMBI GATC 1 cut(s) 119
BstMWI GCNNNNNNNGC 2 cut(s) 10, 277
BstSCI CCNGG 1 cut(s) 179
BstV1I GCAGC 3 cut(s) 58, 69, 321
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 3 cut(s) 45, 60, 219
Cac8I GCNNGC 1 cut(s) 15
CseI GACGC 2 cut(s) 141, 277
Csp6I GTAC 4 cut(s) 112, 160, 211, 262
CviJI RGCY 5 cut(s) 13, 49, 144, 206, 312
CviKI_1 RGCY 5 cut(s) 13, 49, 144, 206, 312
CviQI GTAC 4 cut(s) 112, 160, 211, 262
DdeI CTNAG 2 cut(s) 156, 207
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
EciI GGCGGA 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 52
FaiI YATR 2 cut(s) 36, 231
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 3 cut(s) 47, 58, 310
Fsp4HI GCNGC 3 cut(s) 47, 58, 310
GluI GCNGC 3 cut(s) 47, 58, 310
HapII CCGG 1 cut(s) 180
HgaI GACGC 2 cut(s) 141, 277
Hin1I GRCGYC 1 cut(s) 152
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 4 cut(s) 213, 235, 252, 295
Hpy188I TCNGA 1 cut(s) 157
Hpy8I GTNNAC 4 cut(s) 213, 235, 252, 295
HpyCH4III ACNGT 2 cut(s) 29, 64
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 4 cut(s) 17, 38, 46, 219
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 277
HpyF3I CTNAG 2 cut(s) 156, 207
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 152
Kzo9I GATC 1 cut(s) 119
LmnI GCTCC 2 cut(s) 241, 317
LpnPI CCDG 3 cut(s) 27, 122, 193
Lsp1109I GCAGC 3 cut(s) 58, 69, 321
LweI GCATC 1 cut(s) 336
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 133, 191
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MboII GAAGA 3 cut(s) 19, 87, 114
MflI RGATCY 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 342
MnlI CCTC 4 cut(s) 61, 84, 196, 325
MslI CAYNNNNRTG 1 cut(s) 27
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 181
MwoI GCNNNNNNNGC 2 cut(s) 10, 277
NciI CCSGG 1 cut(s) 181
NdeII GATC 1 cut(s) 119
PaeR7I CTCGAG 1 cut(s) 52
PflFI GACNNNGTC 1 cut(s) 286
PkrI GCNGC 3 cut(s) 48, 59, 311
Ppu21I YACGTR 1 cut(s) 163
PspXI VCTCGAGB 1 cut(s) 52
PsuI RGATCY 1 cut(s) 119
PsyI GACNNNGTC 1 cut(s) 286
RsaI GTAC 4 cut(s) 113, 161, 212, 263
RsaNI GTAC 4 cut(s) 112, 160, 211, 262
RseI CAYNNNNRTG 1 cut(s) 27
SatI GCNGC 3 cut(s) 47, 58, 310
Sau3AI GATC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 181
SduI GDGCHC 1 cut(s) 179
SetI ASST 6 cut(s) 90, 95, 146, 165, 230, 314
SfaNI GCATC 1 cut(s) 336
Sfr274I CTCGAG 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SsiI CCGC 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 179
TaaI ACNGT 2 cut(s) 29, 64
TaiI ACGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 53, 125
TatI WGTACW 3 cut(s) 111, 210, 261
TscAI CASTG 3 cut(s) 45, 67, 226
TseI GCWGC 3 cut(s) 46, 57, 309
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 3 cut(s) 45, 67, 226
Tth111I GACNNNGTC 1 cut(s) 286
XhoI CTCGAG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.