Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013631

Physical Location & Seq

Genomic Coordinates Reverse (-)

6572928 .. 6573494

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0041800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGACTTTAAATTTGGGTGATTGGCTTCTTTTTTTCCTGGATGCTCTTTATGAAGACTCTTGGACTATGCTTTTGTATTTTATTTGGGGAGTTTGGAGGGAGAAGAATTTGCGGGTTTGGGATGGTAAGAGTACTACAGTGGGGGATTTGGAGTTTGGACTGAATGCCCAATTGTGTGACTATCGTTTTCATAATCGAACCCCAGAAAAGGGTGAGGGGAAGGGAAGAGTGCATAGATCGAAAGCTCCCTCTAATGGTTGGTTGAAAATTAATATGGATGGTTCCTTTGATAACTCTACTAATCAGGGTGGAATTGGAGTAATCATTAGAGACTCATCTGGTGCTTGTGTTGAGGCATTGGTGGGGAGGGCGGCAGTCTCACATGCTTTAGAGCATGGACTCTCTCCAATCATTTTTGAGACGGATTCTCAGGTACTTGTTCAGTCAAGCAGAGCGTCATCCCCCATACTTCCTCCTAGGGTCGTGTGTATGATGATATTATTTGTAATCTCCTTCATATCCCGGGTTCTTATTTTACTCATGCTTATCGTCAGGCCAATACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.05

Weight (kDa)

6.9

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013631)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06241
prunus_persica	Prupe.6G110500_v2.0.a1 Prupe.6G110700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0057071
rosa_laevigata	RLG00000008979 RLG00000035149
rosa_multiflora	Rmu_sc0009185.1_g000027
rosa_roxburghii	Rroxscaffold_1G00023130 Rroxscaffold_5G00348010 Rroxscaffold_5G00348020
rosa_rugosa	Rorug04G0041800 Rorug04G0042100.1 Rorug05G0305500
rosa_samantha	Rh5AG374800 Rh5BG385900 Rh5CG409400 Rh5DG399600
rosa_wichuraiana	Rw5G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	112, 371
AcsI	RAATTY	2 cut(s)	10, 106
AfaI	GTAC	2 cut(s)	133, 435
AfiI	CCNNNNNNNGG	3 cut(s)	208, 209, 254
AgsI	TTSAA	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Alw26I	GTCTC	3 cut(s)	324, 382, 413
Ama87I	CYCGRG	1 cut(s)	522
AoxI	GGCC	1 cut(s)	554
ApoI	RAATTY	2 cut(s)	10, 106
ArsI	GACNNNNNNTTYG	3 cut(s)	27, 55, 87
AseI	ATTAAT	1 cut(s)	270
AspA2I	CCTAGG	1 cut(s)	476
AsuC2I	CCSGG	2 cut(s)	523, 524
AsuHPI	GGTGA	2 cut(s)	29, 224
AvaI	CYCGRG	1 cut(s)	522
AvrII	CCTAGG	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	60
BccI	CCATC	2 cut(s)	116, 272
BciT130I	CCWGG	1 cut(s)	38
BcnI	CCSGG	2 cut(s)	523, 524
BcoDI	GTCTC	3 cut(s)	324, 382, 413
BfaI	CTAG	1 cut(s)	477
BfmI	CTRYAG	1 cut(s)	135
BisI	GCNGC	1 cut(s)	372
BlnI	CCTAGG	1 cut(s)	476
BlsI	GCNGC	1 cut(s)	373
BmcAI	AGTACT	1 cut(s)	133
Bme1390I	CCNGG	3 cut(s)	38, 523, 524
BmeT110I	CYCGRG	1 cut(s)	522
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	3 cut(s)	38, 523, 524
BmsI	GCATC	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	60
BpuMI	CCSGG	2 cut(s)	523, 524
BsaJI	CCNNGG	2 cut(s)	476, 522
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 209, 254
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	2 cut(s)	476, 522
BseGI	GGATG	4 cut(s)	46, 127, 283, 458
BseLI	CCNNNNNNNGG	3 cut(s)	208, 209, 254
BseMII	CTCAG	1 cut(s)	443
BshFI	GGCC	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	522
BsiSI	CCGG	1 cut(s)	523
BslI	CCNNNNNNNGG	3 cut(s)	208, 209, 254
BsmAI	GTCTC	3 cut(s)	324, 382, 413
BsmBI	CGTCTC	1 cut(s)	413
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	556
BsoBI	CYCGRG	1 cut(s)	522
Bsp143I	GATC	1 cut(s)	236
BspACI	CCGC	2 cut(s)	112, 371
BspANI	GGCC	1 cut(s)	556
BspCNI	CTCAG	1 cut(s)	442
BspLI	GGNNCC	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	476, 522
BssMI	GATC	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	476
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	139, 564
Bst6I	CTCTTC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	429
BstF5I	GGATG	4 cut(s)	46, 127, 283, 458
BstKTI	GATC	1 cut(s)	239
BstMAI	GTCTC	3 cut(s)	324, 382, 413
BstMBI	GATC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	3 cut(s)	36, 521, 522
BstSFI	CTRYAG	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	556
BtsCI	GGATG	4 cut(s)	46, 127, 283, 458
BtsIMutI	CAGTG	1 cut(s)	144
Cfr9I	CCCGGG	1 cut(s)	522
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	132, 434
CviAII	CATG	3 cut(s)	383, 395, 541
CviJI	RGCY	3 cut(s)	25, 245, 556
CviKI_1	RGCY	3 cut(s)	25, 245, 556
CviQI	GTAC	2 cut(s)	132, 434
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	1 cut(s)	238
DpnII	GATC	1 cut(s)	236
DraI	TTTAAA	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	522
EcoRII	CCWGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	476
ErhI	CCWWGG	1 cut(s)	476
Esp3I	CGTCTC	1 cut(s)	413
FaeI	CATG	3 cut(s)	386, 398, 544
FatI	CATG	3 cut(s)	382, 394, 540
FauI	CCCGC	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	4 cut(s)	53, 134, 290, 445
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	556
HapII	CCGG	1 cut(s)	523
HgaI	GACGC	1 cut(s)	444
Hin1II	CATG	3 cut(s)	386, 398, 544
HinfI	GANTC	4 cut(s)	56, 332, 399, 425
HpaII	CCGG	1 cut(s)	523
HphI	GGTGA	2 cut(s)	29, 224
HpyAV	CCTTC	2 cut(s)	214, 523
HpyCH4III	ACNGT	2 cut(s)	139, 564
HpyCH4V	TGCA	1 cut(s)	232
HpyF3I	CTNAG	1 cut(s)	429
Hsp92II	CATG	3 cut(s)	386, 398, 544
Kzo9I	GATC	1 cut(s)	236
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	8 cut(s)	23, 50, 216, 290, 324, 416, 536, 538
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	477
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	1 cut(s)	238
MboI	GATC	1 cut(s)	236
MboII	GAAGA	3 cut(s)	65, 115, 237
MfeI	CAATTG	1 cut(s)	170
MluCI	AATT	5 cut(s)	10, 106, 170, 267, 312
MlyI	GAGTC	3 cut(s)	50, 326, 393
MnlI	CCTC	6 cut(s)	90, 208, 259, 346, 360, 483
MseI	TTAA	2 cut(s)	8, 270
MspI	CCGG	1 cut(s)	523
MspR9I	CCNGG	3 cut(s)	38, 523, 524
MunI	CAATTG	1 cut(s)	170
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	38
NciI	CCSGG	2 cut(s)	523, 524
NdeII	GATC	1 cut(s)	236
NlaIII	CATG	3 cut(s)	386, 398, 544
NlaIV	GGNNCC	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	386
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	425
PfoI	TCCNGGA	1 cut(s)	36
PkrI	GCNGC	1 cut(s)	373
PleI	GAGTC	3 cut(s)	50, 326, 393
PpsI	GAGTC	3 cut(s)	50, 326, 393
PshBI	ATTAAT	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	283
RsaI	GTAC	2 cut(s)	133, 435
RsaNI	GTAC	2 cut(s)	132, 434
SaqAI	TTAA	2 cut(s)	8, 270
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	1 cut(s)	236
ScaI	AGTACT	1 cut(s)	133
SchI	GAGTC	3 cut(s)	50, 326, 393
ScrFI	CCNGG	3 cut(s)	38, 523, 524
SetI	ASST	2 cut(s)	247, 435
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	1 cut(s)	135
SmaI	CCCGGG	1 cut(s)	524
Sse9I	AATT	5 cut(s)	10, 106, 170, 267, 312
SsiI	CCGC	2 cut(s)	112, 371
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	3 cut(s)	36, 521, 522
StyI	CCWWGG	1 cut(s)	476
TaaI	ACNGT	2 cut(s)	139, 564
TaqI	TCGA	2 cut(s)	196, 239
TasI	AATT	5 cut(s)	10, 106, 170, 267, 312
TatI	WGTACW	1 cut(s)	131
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	2 cut(s)	8, 270
Tru9I	TTAA	2 cut(s)	8, 270
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	3 cut(s)	66, 179, 505
TspGWI	ACGGA	1 cut(s)	437
TspMI	CCCGGG	1 cut(s)	522
TspRI	CASTG	1 cut(s)	144
VspI	ATTAAT	1 cut(s)	270
XapI	RAATTY	2 cut(s)	10, 106
XceI	RCATGY	1 cut(s)	386
XmaI	CCCGGG	1 cut(s)	522
XmaJI	CCTAGG	1 cut(s)	476
XspI	CTAG	1 cut(s)	477
ZrmI	AGTACT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.