Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0013631

Physical Location & Seq

Genomic Coordinates Reverse (-)

19847914 .. 19851281

Gene Structure 3368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGACGAAAAAGGCTTATTGCGGCGTCATAACTGTTGCTCCGGCGAGCAAAATCAATGTCTCTGACGAAGTGCAAAGCCAGGTCAATTCTTCGTACAAAGAAAAGTACTGTGGGGCATCAAGTAACTTCACCAAAAGATTCAAGGAAGGAGAGTTCGTGGACAAGCGCAGTGGGCAGTGCGGCTACAAGCAAGAGGCCAAATACACCTCGACGGACAAGTATGTCGACAAGACTCAGGGCTATACCACCAAGTACAAGTCTCAGCTCAAGGTCACCAAGTCTGTGTACACCAAGAAGAGTGCTAATTTAGGAACTAAGTCCAGCTACAAACTGTGGAATTGGATTAGCAGAACTTATGTAGACTTTACTACAGTGGTGCAAACCCTAGTTGCTAAGAGGTCAGTTTCAAGGCCAGATGATGGAAGGAAATATAGGACCCCTCCTCGGCCCCTCAACCCTAGGCGGCAGCTCCGCACGCAATCTGCTGCAACCAAGATTGAAGCAGCCTGCGCAATCCCGATTGAAGTTCGACCGCACGTAACCGGGATTGAAGCAGCTTCGCAATCTCGTAACCAAGACTCAAGTTCGACTCCACGTAATCGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

22.76

Weight (kDa)

9.94

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013631)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06241
prunus_persica	Prupe.6G110500_v2.0.a1 Prupe.6G110700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0057071
rosa_laevigata	RLG00000008979 RLG00000035149
rosa_multiflora	Rmu_sc0009185.1_g000027
rosa_roxburghii	Rroxscaffold_1G00023130 Rroxscaffold_5G00348010 Rroxscaffold_5G00348020
rosa_rugosa	Rorug04G0041800 Rorug04G0042100.1 Rorug05G0305500
rosa_samantha	Rh5AG374800 Rh5BG385900 Rh5CG409400 Rh5DG399600
rosa_wichuraiana	Rw5G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
Acc16I	TGCGCA	1 cut(s)	511
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccI	GTMKAC	2 cut(s)	225, 360
AciI	CCGC	5 cut(s)	21, 180, 463, 472, 533
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	4 cut(s)	95, 107, 254, 287
AfiI	CCNNNNNNNGG	2 cut(s)	419, 444
AgsI	TTSAA	5 cut(s)	142, 408, 500, 524, 551
AjnI	CCWGG	1 cut(s)	78
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
AluBI	AGCT	4 cut(s)	265, 324, 469, 557
AluI	AGCT	4 cut(s)	265, 324, 469, 557
Alw26I	GTCTC	2 cut(s)	64, 264
AoxI	GGCC	3 cut(s)	195, 410, 446
ApeKI	GCWGC	4 cut(s)	466, 485, 503, 554
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AspA2I	CCTAGG	1 cut(s)	458
AspLEI	GCGC	2 cut(s)	168, 512
AspS9I	GGNCC	2 cut(s)	435, 447
AsuC2I	CCSGG	1 cut(s)	544
AsuHPI	GGTGA	2 cut(s)	121, 265
AvaII	GGWCC	1 cut(s)	435
AvrII	CCTAGG	1 cut(s)	458
BbvI	GCAGC	4 cut(s)	472, 478, 515, 566
BccI	CCATC	1 cut(s)	413
BciT130I	CCWGG	1 cut(s)	80
BcnI	CCSGG	1 cut(s)	544
BcoDI	GTCTC	2 cut(s)	64, 264
BfaI	CTAG	2 cut(s)	386, 459
BfmI	CTRYAG	1 cut(s)	369
BisI	GCNGC	7 cut(s)	22, 181, 464, 467, 486, 504, 555
BlnI	CCTAGG	1 cut(s)	458
BlsI	GCNGC	7 cut(s)	23, 182, 465, 468, 487, 505, 556
BmcAI	AGTACT	1 cut(s)	107
Bme1390I	CCNGG	2 cut(s)	80, 544
Bme18I	GGWCC	1 cut(s)	435
BmgT120I	GGNCC	2 cut(s)	435, 447
BmiI	GGNNCC	2 cut(s)	437, 449
BmrFI	CCNGG	2 cut(s)	80, 544
BmsI	GCATC	1 cut(s)	125
BpuEI	CTTGAG	2 cut(s)	251, 565
BpuMI	CCSGG	1 cut(s)	544
BsaAI	YACGTR	2 cut(s)	538, 596
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	443, 458
BsaXI	ACNNNNNCTCC	4 cut(s)	22, 52, 141, 171
Bsc4I	CCNNNNNNNGG	2 cut(s)	419, 444
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	2 cut(s)	443, 458
BseLI	CCNNNNNNNGG	2 cut(s)	419, 444
BseMII	CTCAG	2 cut(s)	248, 275
BseRI	GAGGAG	1 cut(s)	432
BseXI	GCAGC	4 cut(s)	472, 478, 515, 566
Bsh1285I	CGRYCG	1 cut(s)	533
BshFI	GGCC	3 cut(s)	197, 412, 448
BsiEI	CGRYCG	1 cut(s)	533
BsiSI	CCGG	2 cut(s)	41, 543
BslI	CCNNNNNNNGG	2 cut(s)	419, 444
BsmAI	GTCTC	2 cut(s)	64, 264
BsnI	GGCC	3 cut(s)	197, 412, 448
Bsp1407I	TGTACA	1 cut(s)	285
BspACI	CCGC	5 cut(s)	21, 180, 463, 472, 533
BspANI	GGCC	3 cut(s)	197, 412, 448
BspCNI	CTCAG	2 cut(s)	247, 274
BspLI	GGNNCC	2 cut(s)	437, 449
BsrGI	TGTACA	1 cut(s)	285
BssECI	CCNNGG	2 cut(s)	443, 458
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	4 cut(s)	34, 110, 333, 373
Bst6I	CTCTTC	1 cut(s)	290
BstACI	GRCGYC	1 cut(s)	24
BstAUI	TGTACA	1 cut(s)	285
BstBAI	YACGTR	2 cut(s)	538, 596
BstC8I	GCNNGC	3 cut(s)	46, 476, 508
BstDEI	CTNAG	4 cut(s)	234, 261, 315, 393
BstEII	GGTNACC	1 cut(s)	271
BstHHI	GCGC	2 cut(s)	168, 512
BstMAI	GTCTC	2 cut(s)	64, 264
BstMCI	CGRYCG	1 cut(s)	533
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 475, 509
BstNI	CCWGG	1 cut(s)	80
BstPI	GGTNACC	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	78, 542
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	4 cut(s)	472, 478, 515, 566
BsuRI	GGCC	3 cut(s)	197, 412, 448
BtsI	GCAGTG	2 cut(s)	175, 182
BtsIMutI	CAGTG	3 cut(s)	175, 182, 378
Cac8I	GCNNGC	3 cut(s)	46, 476, 508
CfoI	GCGC	2 cut(s)	168, 512
Cfr13I	GGNCC	2 cut(s)	435, 447
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	4 cut(s)	94, 106, 253, 286
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviQI	GTAC	4 cut(s)	94, 106, 253, 286
DdeI	CTNAG	4 cut(s)	234, 261, 315, 393
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	435
Eco91I	GGTNACC	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	435
EcoO65I	GGTNACC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	458
FaiI	YATR	5 cut(s)	29, 222, 243, 357, 432
FblI	GTMKAC	2 cut(s)	225, 360
Fnu4HI	GCNGC	7 cut(s)	22, 181, 464, 467, 486, 504, 555
Fsp4HI	GCNGC	7 cut(s)	22, 181, 464, 467, 486, 504, 555
FspBI	CTAG	2 cut(s)	386, 459
FspI	TGCGCA	1 cut(s)	511
GlaI	GCGC	2 cut(s)	167, 511
GluI	GCNGC	7 cut(s)	22, 181, 464, 467, 486, 504, 555
HaeIII	GGCC	3 cut(s)	197, 412, 448
HapII	CCGG	2 cut(s)	41, 543
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	2 cut(s)	168, 512
Hin1I	GRCGYC	1 cut(s)	24
Hin6I	GCGC	2 cut(s)	166, 510
HinP1I	GCGC	2 cut(s)	166, 510
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	4 cut(s)	138, 232, 578, 589
HpaII	CCGG	2 cut(s)	41, 543
HphI	GGTGA	2 cut(s)	121, 265
Hpy166II	GTNNAC	5 cut(s)	160, 226, 286, 288, 361
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	517, 602
Hpy8I	GTNNAC	5 cut(s)	160, 226, 286, 288, 361
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	140, 417
HpyCH4III	ACNGT	4 cut(s)	34, 110, 333, 373
HpyCH4IV	ACGT	2 cut(s)	537, 595
HpyCH4V	TGCA	3 cut(s)	73, 379, 488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 475, 509
HpyF3I	CTNAG	4 cut(s)	234, 261, 315, 393
HpySE526I	ACGT	2 cut(s)	537, 595
Hsp92I	GRCGYC	1 cut(s)	24
HspAI	GCGC	2 cut(s)	166, 510
LmnI	GCTCC	2 cut(s)	43, 474
LpnPI	CCDG	8 cut(s)	54, 65, 92, 221, 334, 426, 520, 556
Lsp1109I	GCAGC	4 cut(s)	472, 478, 515, 566
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	2 cut(s)	386, 459
MaeII	ACGT	2 cut(s)	537, 595
MaeIII	GTNAC	4 cut(s)	122, 271, 538, 569
MboII	GAAGA	2 cut(s)	81, 307
MluCI	AATT	3 cut(s)	85, 304, 337
MlyI	GAGTC	3 cut(s)	226, 572, 583
MnlI	CCTC	6 cut(s)	187, 217, 390, 450, 453, 461
MspI	CCGG	2 cut(s)	41, 543
MspR9I	CCNGG	2 cut(s)	80, 544
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	3 cut(s)	172, 475, 509
NciI	CCSGG	1 cut(s)	544
NlaIV	GGNNCC	2 cut(s)	437, 449
NmeAIII	GCCGAG	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	271
NsbI	TGCGCA	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	138
PflMI	CCANNNNNTGG	1 cut(s)	419
PkrI	GCNGC	7 cut(s)	23, 182, 465, 468, 487, 505, 556
PleI	GAGTC	3 cut(s)	226, 572, 583
PpsI	GAGTC	3 cut(s)	226, 572, 583
Ppu21I	YACGTR	2 cut(s)	538, 596
PpuMI	RGGWCCY	1 cut(s)	435
Psp5II	RGGWCCY	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	78
PspEI	GGTNACC	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	2 cut(s)	437, 449
PspPI	GGNCC	2 cut(s)	435, 447
PspPPI	RGGWCCY	1 cut(s)	435
RsaI	GTAC	4 cut(s)	95, 107, 254, 287
RsaNI	GTAC	4 cut(s)	94, 106, 253, 286
SalI	GTCGAC	1 cut(s)	224
SatI	GCNGC	7 cut(s)	22, 181, 464, 467, 486, 504, 555
Sau96I	GGNCC	2 cut(s)	435, 447
ScaI	AGTACT	1 cut(s)	107
SchI	GAGTC	3 cut(s)	226, 572, 583
ScrFI	CCNGG	2 cut(s)	80, 544
SfaNI	GCATC	1 cut(s)	125
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	435
SmlI	CTYRAG	2 cut(s)	266, 580
SmoI	CTYRAG	2 cut(s)	266, 580
Sse9I	AATT	3 cut(s)	85, 304, 337
SsiI	CCGC	5 cut(s)	21, 180, 463, 472, 533
SspMI	CTAG	2 cut(s)	386, 459
StyD4I	CCNGG	2 cut(s)	78, 542
StyI	CCWWGG	1 cut(s)	458
TaaI	ACNGT	4 cut(s)	34, 110, 333, 373
TaiI	ACGT	2 cut(s)	540, 598
TaqI	TCGA	4 cut(s)	209, 225, 529, 587
TasI	AATT	3 cut(s)	85, 304, 337
TatI	WGTACW	3 cut(s)	105, 252, 285
TauI	GCSGC	3 cut(s)	24, 183, 466
TfiI	GAWTC	1 cut(s)	138
TscAI	CASTG	3 cut(s)	175, 182, 378
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	4 cut(s)	466, 485, 503, 554
Tsp45I	GTSAC	1 cut(s)	271
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	3 cut(s)	175, 182, 378
Van91I	CCANNNNNTGG	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	435
XmaJI	CCTAGG	1 cut(s)	458
XmiI	GTMKAC	2 cut(s)	225, 360
XspI	CTAG	2 cut(s)	386, 459
ZrmI	AGTACT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.