Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0013631

Physical Location & Seq

Genomic Coordinates Reverse (-)

63732439 .. 63733252

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG374800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGTAGGGCGCCCCTTGTAGTTCATTCATATCAAACACAACCCTTTTTTCTCAGATCTCAAGCTCTCAGCCAAACAATGTCGAAAGCGCCTGAAACACACTATCATTACTGTGGAGTGATCGAACGGGTGCCCTCGAGTTCGAGCAAGAGATCTTCTCAGTTCAGTGAGTCCACACAAGTGGAGAAGAAAGTTCGAGCTAGCTACAAGGATGAGTATGGTGGAGGTTGGAGCAAGTTTACTGAGAGCTACAAGGCGCAAGAGTACGTGGACAAGAAAACTGGAGGCATTGGTTACAAGCAAGAAGCTAAGTATACCTCTACTGACAAGTATGTGGACAATGAGCAAGGCTACACCACCGAGTATCATACCCAGGTGAAGATTCAGAAGTCTGTTTACCCCAACAAGAGCTCAACCAGCAAGTCCAAGAACAACAAGGATAGCATCGGCTATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

17.37

Weight (kDa)

9.37

Isoelectric Point (pI)

59.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013631)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06241
prunus_persica	Prupe.6G110500_v2.0.a1 Prupe.6G110700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0057071
rosa_laevigata	RLG00000008979 RLG00000035149
rosa_multiflora	Rmu_sc0009185.1_g000027
rosa_roxburghii	Rroxscaffold_1G00023130 Rroxscaffold_5G00348010 Rroxscaffold_5G00348020
rosa_rugosa	Rorug04G0041800 Rorug04G0042100.1 Rorug05G0305500
rosa_samantha	Rh5AG374800 Rh5BG385900 Rh5CG409400 Rh5DG399600
rosa_wichuraiana	Rw5G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	10, 130
AccI	GTMKAC	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	266
AjnI	CCWGG	1 cut(s)	372
AleI	CACNNNNGTG	1 cut(s)	179
AluBI	AGCT	6 cut(s)	65, 200, 204, 249, 308, 411
AluI	AGCT	6 cut(s)	65, 200, 204, 249, 308, 411
Alw21I	GWGCWC	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	136
AspLEI	GCGC	3 cut(s)	13, 91, 259
AsuHPI	GGTGA	1 cut(s)	388
AsuNHI	GCTAGC	1 cut(s)	200
AvaI	CYCGRG	1 cut(s)	136
BaeGI	GKGCMC	1 cut(s)	135
BanI	GGYRCC	2 cut(s)	10, 130
BanII	GRGCYC	1 cut(s)	413
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
Bbv12I	GWGCWC	1 cut(s)	413
BciT130I	CCWGG	1 cut(s)	374
BfaI	CTAG	1 cut(s)	201
BfoI	RGCGCY	2 cut(s)	14, 92
BglII	AGATCT	2 cut(s)	56, 152
Bme1390I	CCNGG	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	12, 132
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	1 cut(s)	453
BmtI	GCTAGC	1 cut(s)	204
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpmI	CTGGAG	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	372
Bse1I	ACTGG	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	217
BseMII	CTCAG	4 cut(s)	67, 82, 173, 234
BseNI	ACTGG	1 cut(s)	286
BseSI	GKGCMC	1 cut(s)	135
BshNI	GGYRCC	2 cut(s)	10, 130
BsiHKAI	GWGCWC	1 cut(s)	413
BsiHKCI	CYCGRG	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	135, 413
Bsp143I	GATC	3 cut(s)	56, 120, 152
BspCNI	CTCAG	4 cut(s)	66, 81, 172, 235
BspLI	GGNNCC	2 cut(s)	12, 132
BspOI	GCTAGC	1 cut(s)	204
BspT107I	GGYRCC	2 cut(s)	10, 130
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	3 cut(s)	56, 120, 152
BssNAI	GTATAC	1 cut(s)	315
BssNI	GRCGYC	1 cut(s)	11
Bst1107I	GTATAC	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	113
BstACI	GRCGYC	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	5 cut(s)	53, 68, 159, 243, 309
BstF5I	GGATG	1 cut(s)	217
BstH2I	RGCGCY	2 cut(s)	14, 92
BstHHI	GCGC	3 cut(s)	13, 91, 259
BstKTI	GATC	3 cut(s)	59, 123, 155
BstMBI	GATC	3 cut(s)	56, 120, 152
BstMWI	GCNNNNNNNGC	1 cut(s)	417
BstNI	CCWGG	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	135
BstX2I	RGATCY	2 cut(s)	56, 152
BstXI	CCANNNNNNTGG	1 cut(s)	181
BstYI	RGATCY	2 cut(s)	56, 152
BstZ17I	GTATAC	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	202
CfoI	GCGC	3 cut(s)	13, 91, 259
Csp6I	GTAC	1 cut(s)	265
CviJI	RGCY	9 cut(s)	65, 72, 200, 204, 249, 308, 351, 411, 450
CviKI_1	RGCY	9 cut(s)	65, 72, 200, 204, 249, 308, 351, 411, 450
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	5 cut(s)	53, 68, 159, 243, 309
DinI	GGCGCC	1 cut(s)	12
DpnI	GATC	3 cut(s)	58, 122, 154
DpnII	GATC	3 cut(s)	56, 120, 152
Ecl136II	GAGCTC	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	413
Eco53kI	GAGCTC	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	413
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
FaiI	YATR	5 cut(s)	31, 219, 315, 333, 369
FblI	GTMKAC	1 cut(s)	314
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	413
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	3 cut(s)	12, 90, 258
GsuI	CTGGAG	1 cut(s)	303
HaeII	RGCGCY	2 cut(s)	14, 92
HhaI	GCGC	3 cut(s)	13, 91, 259
Hin1I	GRCGYC	1 cut(s)	11
Hin6I	GCGC	3 cut(s)	11, 89, 257
HinP1I	GCGC	3 cut(s)	11, 89, 257
HinfI	GANTC	2 cut(s)	170, 382
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	6 cut(s)	174, 240, 271, 315, 337, 397
Hpy188I	TCNGA	2 cut(s)	56, 387
Hpy8I	GTNNAC	6 cut(s)	174, 240, 271, 315, 337, 397
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	1 cut(s)	417
HpyF3I	CTNAG	5 cut(s)	53, 68, 159, 243, 309
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	11
HspAI	GCGC	3 cut(s)	11, 89, 257
KasI	GGCGCC	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	56, 120, 152
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	5 cut(s)	105, 267, 359, 386, 430
LweI	GCATC	1 cut(s)	453
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	3 cut(s)	58, 122, 154
MboI	GATC	3 cut(s)	56, 120, 152
MboII	GAAGA	3 cut(s)	147, 199, 391
MflI	RGATCY	2 cut(s)	56, 152
MhlI	GDGCHC	2 cut(s)	135, 413
Mly113I	GGCGCC	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	4 cut(s)	145, 218, 278, 328
MseI	TTAA	1 cut(s)	457
MslI	CAYNNNNRTG	2 cut(s)	111, 179
MspR9I	CCNGG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	417
NarI	GGCGCC	1 cut(s)	11
NdeII	GATC	3 cut(s)	56, 120, 152
NheI	GCTAGC	1 cut(s)	200
NlaIV	GGNNCC	2 cut(s)	12, 132
OliI	CACNNNNGTG	1 cut(s)	179
PaeR7I	CTCGAG	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	382
PleI	GAGTC	1 cut(s)	178
PluTI	GGCGCC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	178
Ppu21I	YACGTR	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	12, 132
PspXI	VCTCGAGB	1 cut(s)	136
PsuI	RGATCY	2 cut(s)	56, 152
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	2 cut(s)	111, 179
SacI	GAGCTC	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	457
Sau3AI	GATC	3 cut(s)	56, 120, 152
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	2 cut(s)	135, 413
SfaNI	GCATC	1 cut(s)	453
SfoI	GGCGCC	1 cut(s)	12
Sfr274I	CTCGAG	1 cut(s)	136
SlaI	CTCGAG	1 cut(s)	136
SmiMI	CAYNNNNRTG	2 cut(s)	111, 179
SmlI	CTYRAG	2 cut(s)	60, 136
SmoI	CTYRAG	2 cut(s)	60, 136
SspDI	GGCGCC	1 cut(s)	10
SspMI	CTAG	1 cut(s)	201
SstI	GAGCTC	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	5 cut(s)	83, 123, 137, 143, 196
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	1 cut(s)	457
Tru9I	TTAA	1 cut(s)	457
TscAI	CASTG	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	14, 18
TspRI	CASTG	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	314
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.