Prupe.6G110700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013631
Physical Location & Seq
Forward (+)
7938630 .. 7939558
929 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G110700.1

Sequence Viewer

Length: 420 bp
ATGTCGAAGAAGCCTGATTCAAAGCCTGCGTATGGTTATTGTGGCTACCTAGAAGTGATGCCTTTGAGCAAGGGATCGTCTTCTTCACAGCTCAACGAGTCTGCAGAACTTCAGATCAAAGATCGATATTCGTATAAGGATGCATATGGTGGAGGAGGTTCAAGCAGCTTTACTGAGAGCTACAAGGCTGGGGAGTTTGTGGACAAGAGCACTGGTGGCTTGGGCTACAAGCAGGAGGCAAACTACACCTCCATTGACAAGTATGTGAACAAGGAGCTAGGGTTTACCACTGAGTACCAGACCCAGGTGAAGTTCAAGAAGTCTGTTTACCCTAACAAGACCCAAGTGAAGTTCAAGAAGTCTGCTTCTCCTTATAAGAGTGGAACCAAGTCCTACAACAATCGCGTTGACTATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.59

Weight (kDa)

9.33

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AccII CGCG 1 cut(s) 405
AclWI GGATC 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 32, 304
AgsI TTSAA 4 cut(s) 21, 162, 316, 355
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 4 cut(s) 91, 168, 180, 277
AluI AGCT 4 cut(s) 91, 168, 180, 277
Alw21I GWGCWC 1 cut(s) 212
AlwI GGATC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 319
BarI GAAGNNNNNNTAC 2 cut(s) 311, 343
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 305
BfaI CTAG 2 cut(s) 50, 278
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 385
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 2 cut(s) 48, 130
BpiI GAAGAC 1 cut(s) 72
Bsa29I ATCGAT 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 303
BsaXI ACNNNNNCTCC 4 cut(s) 233, 263, 266, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 304
Bse1I ACTGG 1 cut(s) 217
BseBI CCWGG 1 cut(s) 305
BseCI ATCGAT 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 2 cut(s) 32, 304
BseMII CTCAG 2 cut(s) 165, 282
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 177
BseYI CCCAGC 1 cut(s) 188
Bsh1236I CGCG 1 cut(s) 405
BshVI ATCGAT 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 32, 304
Bsp1286I GDGCHC 1 cut(s) 212
Bsp143I GATC 3 cut(s) 74, 114, 121
BspCNI CTCAG 2 cut(s) 166, 283
BspDI ATCGAT 1 cut(s) 124
BspFNI CGCG 1 cut(s) 405
BspLI GGNNCC 1 cut(s) 385
BspMAI CTGCAG 1 cut(s) 106
BspPI GGATC 1 cut(s) 82
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 3 cut(s) 74, 114, 121
Bst2UI CCWGG 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 174, 291
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 1 cut(s) 405
BstKTI GATC 3 cut(s) 77, 117, 124
BstMBI GATC 3 cut(s) 74, 114, 121
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 102
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 72
Bsu15I ATCGAT 1 cut(s) 124
BsuTUI ATCGAT 1 cut(s) 124
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 210, 288
Cac8I GCNNGC 1 cut(s) 27
ClaI ATCGAT 1 cut(s) 124
Csp6I GTAC 1 cut(s) 295
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 2 cut(s) 174, 291
DpnI GATC 3 cut(s) 76, 116, 123
DpnII GATC 3 cut(s) 74, 114, 121
Eco57I CTGAAG 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 145
FaiI YATR 6 cut(s) 33, 135, 145, 147, 264, 375
FauNDI CATATG 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 166
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 166
FspBI CTAG 2 cut(s) 50, 278
GluI GCNGC 1 cut(s) 166
GsaI CCCAGC 1 cut(s) 192
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 2 cut(s) 17, 98
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 5 cut(s) 202, 268, 285, 328, 409
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 2 cut(s) 316, 355
Hpy8I GTNNAC 5 cut(s) 202, 268, 285, 328, 409
HpyCH4V TGCA 2 cut(s) 104, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 2 cut(s) 174, 291
Kzo9I GATC 3 cut(s) 74, 114, 121
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 8 cut(s) 27, 39, 174, 198, 218, 290, 311, 317
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 2 cut(s) 48, 130
MaeI CTAG 2 cut(s) 50, 278
MalI GATC 3 cut(s) 76, 116, 123
MboI GATC 3 cut(s) 74, 114, 121
MboII GAAGA 3 cut(s) 19, 72, 75
MhlI GDGCHC 1 cut(s) 212
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 4 cut(s) 146, 149, 229, 259
Mph1103I ATGCAT 1 cut(s) 145
MseI TTAA 1 cut(s) 418
MspR9I CCNGG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 1 cut(s) 216
NdeI CATATG 1 cut(s) 145
NdeII GATC 3 cut(s) 74, 114, 121
NlaIV GGNNCC 1 cut(s) 385
NsiI ATGCAT 1 cut(s) 145
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 167
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PsiI TTATAA 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 303
PspFI CCCAGC 1 cut(s) 188
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 385
PstI CTGCAG 1 cut(s) 106
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SaqAI TTAA 1 cut(s) 418
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 3 cut(s) 74, 114, 121
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 212
SetI ASST 8 cut(s) 51, 93, 160, 170, 182, 251, 279, 309
SfaNI GCATC 2 cut(s) 48, 130
SfcI CTRYAG 1 cut(s) 102
SspMI CTAG 2 cut(s) 50, 278
StyD4I CCNGG 1 cut(s) 303
TaqI TCGA 2 cut(s) 5, 124
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 418
Tru9I TTAA 1 cut(s) 418
TscAI CASTG 2 cut(s) 217, 295
TseI GCWGC 1 cut(s) 165
TspRI CASTG 2 cut(s) 217, 295
XspI CTAG 2 cut(s) 50, 278
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.