Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013631

Physical Location & Seq

Genomic Coordinates Reverse (-)

54987378 .. 54988183

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG409400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGATGCAAGCCACAGTTCACAAAACCACTAATACACGAAAACCCTACACCCCACCTAACCTTATTATAAGTAGGGAGCCCCTTGTAGTTCATTCATATCAAACACAACCCTTTTTTCTCAGATCTCAAGCTCTCAGCCAAACAATGTCGAAAGCGCCTGAAACACACTATCATTACTGTGGAGTGATCGAACGGGTGCCCTCGAGTTCGAGCAAGAGATCTTCTCAGTTCAGTGAGTCCACACAAGTGGAGAAGAAAGTTCGAGCTAGCTACAAGGATGAGTATGGTGGAGGTTGGAGCAAGTTTACTGAGAGCTACAAGGCGCAAGAGTACGTGGACAAGAAAACTGGAGGCATGGGTTACAAGCAAGAAGCTAAGTATACCTCTACTGACAAGTATGTGGACAATGAGCAAGGCTACACCACCGAGTATCATACCCAGGTGAAGATTCAGAAGTCTGTTTACCCCAACAAGAGCTCAACCAGCAAGTCCAAGAACAACAAGGATAGCATCGGCTATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.98

Weight (kDa)

9.47

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013631)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06241
prunus_persica	Prupe.6G110500_v2.0.a1 Prupe.6G110700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0057071
rosa_laevigata	RLG00000008979 RLG00000035149
rosa_multiflora	Rmu_sc0009185.1_g000027
rosa_roxburghii	Rroxscaffold_1G00023130 Rroxscaffold_5G00348010 Rroxscaffold_5G00348020
rosa_rugosa	Rorug04G0041800 Rorug04G0042100.1 Rorug05G0305500
rosa_samantha	Rh5AG374800 Rh5BG385900 Rh5CG409400 Rh5DG399600
rosa_wichuraiana	Rw5G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	380
AfaI	GTAC	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	438
AleI	CACNNNNGTG	1 cut(s)	245
AluBI	AGCT	6 cut(s)	131, 266, 270, 315, 374, 477
AluI	AGCT	6 cut(s)	131, 266, 270, 315, 374, 477
Alw21I	GWGCWC	1 cut(s)	479
Ama87I	CYCGRG	1 cut(s)	202
AspLEI	GCGC	2 cut(s)	157, 325
AsuHPI	GGTGA	1 cut(s)	454
AsuNHI	GCTAGC	1 cut(s)	266
AvaI	CYCGRG	1 cut(s)	202
BaeGI	GKGCMC	1 cut(s)	201
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	2 cut(s)	81, 479
BarI	GAAGNNNNNNTAC	2 cut(s)	446, 478
Bbv12I	GWGCWC	1 cut(s)	479
BciT130I	CCWGG	1 cut(s)	440
BfaI	CTAG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	158
BglII	AGATCT	2 cut(s)	122, 218
Bme1390I	CCNGG	1 cut(s)	440
BmeT110I	CYCGRG	1 cut(s)	202
BmiI	GGNNCC	2 cut(s)	78, 198
BmrFI	CCNGG	1 cut(s)	440
BmsI	GCATC	1 cut(s)	519
BmtI	GCTAGC	1 cut(s)	270
BplI	GAGNNNNNCTC	2 cut(s)	208, 240
BpmI	CTGGAG	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	111
BsaAI	YACGTR	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	438
Bse1I	ACTGG	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	1 cut(s)	438
BseGI	GGATG	1 cut(s)	283
BseMII	CTCAG	4 cut(s)	133, 148, 239, 300
BseNI	ACTGG	1 cut(s)	352
BseSI	GKGCMC	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	479
BsiHKCI	CYCGRG	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	3 cut(s)	81, 201, 479
Bsp143I	GATC	3 cut(s)	122, 186, 218
BspCNI	CTCAG	4 cut(s)	132, 147, 238, 301
BspLI	GGNNCC	2 cut(s)	78, 198
BspOI	GCTAGC	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	438
BssMI	GATC	3 cut(s)	122, 186, 218
BssNAI	GTATAC	1 cut(s)	381
Bst1107I	GTATAC	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	2 cut(s)	16, 179
BstBAI	YACGTR	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	9, 268
BstDEI	CTNAG	5 cut(s)	119, 134, 225, 309, 375
BstF5I	GGATG	1 cut(s)	283
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	2 cut(s)	157, 325
BstKTI	GATC	3 cut(s)	125, 189, 221
BstMBI	GATC	3 cut(s)	122, 186, 218
BstMWI	GCNNNNNNNGC	1 cut(s)	483
BstNI	CCWGG	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	438
BstSLI	GKGCMC	1 cut(s)	201
BstX2I	RGATCY	2 cut(s)	122, 218
BstXI	CCANNNNNNTGG	1 cut(s)	247
BstYI	RGATCY	2 cut(s)	122, 218
BstZ17I	GTATAC	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	2 cut(s)	9, 268
CfoI	GCGC	2 cut(s)	157, 325
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	1 cut(s)	355
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	5 cut(s)	119, 134, 225, 309, 375
DpnI	GATC	3 cut(s)	124, 188, 220
DpnII	GATC	3 cut(s)	122, 186, 218
Ecl136II	GAGCTC	1 cut(s)	477
Eco24I	GRGCYC	2 cut(s)	81, 479
Eco53kI	GAGCTC	1 cut(s)	477
Eco88I	CYCGRG	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	477
EcoRII	CCWGG	1 cut(s)	438
EcoT38I	GRGCYC	2 cut(s)	81, 479
FaeI	CATG	1 cut(s)	358
FaiI	YATR	7 cut(s)	68, 97, 285, 356, 381, 399, 435
FatI	CATG	1 cut(s)	354
FblI	GTMKAC	1 cut(s)	380
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	2 cut(s)	81, 479
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	2 cut(s)	156, 324
GsuI	CTGGAG	1 cut(s)	369
HaeII	RGCGCY	1 cut(s)	158
HhaI	GCGC	2 cut(s)	157, 325
Hin1II	CATG	1 cut(s)	358
Hin6I	GCGC	2 cut(s)	155, 323
HinP1I	GCGC	2 cut(s)	155, 323
HinfI	GANTC	2 cut(s)	236, 448
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	7 cut(s)	19, 240, 306, 337, 381, 403, 463
Hpy188I	TCNGA	2 cut(s)	122, 453
Hpy8I	GTNNAC	7 cut(s)	19, 240, 306, 337, 381, 403, 463
HpyCH4III	ACNGT	2 cut(s)	16, 179
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	1 cut(s)	483
HpyF3I	CTNAG	5 cut(s)	119, 134, 225, 309, 375
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	358
HspAI	GCGC	2 cut(s)	155, 323
Kzo9I	GATC	3 cut(s)	122, 186, 218
LmnI	GCTCC	2 cut(s)	76, 297
LpnPI	CCDG	5 cut(s)	171, 333, 425, 452, 496
LweI	GCATC	1 cut(s)	519
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	3 cut(s)	124, 188, 220
MboI	GATC	3 cut(s)	122, 186, 218
MboII	GAAGA	3 cut(s)	213, 265, 457
MflI	RGATCY	2 cut(s)	122, 218
MhlI	GDGCHC	3 cut(s)	81, 201, 479
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	4 cut(s)	211, 284, 344, 394
MseI	TTAA	1 cut(s)	523
MslI	CAYNNNNRTG	2 cut(s)	177, 245
MspR9I	CCNGG	1 cut(s)	440
MvaI	CCWGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	483
NdeII	GATC	3 cut(s)	122, 186, 218
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	2 cut(s)	78, 198
OliI	CACNNNNGTG	1 cut(s)	245
PaeR7I	CTCGAG	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	448
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Ppu21I	YACGTR	1 cut(s)	334
PsiI	TTATAA	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	479
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	2 cut(s)	78, 198
PspXI	VCTCGAGB	1 cut(s)	202
PsuI	RGATCY	2 cut(s)	122, 218
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	2 cut(s)	177, 245
SacI	GAGCTC	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	523
Sau3AI	GATC	3 cut(s)	122, 186, 218
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	440
SduI	GDGCHC	3 cut(s)	81, 201, 479
SfaNI	GCATC	1 cut(s)	519
Sfr274I	CTCGAG	1 cut(s)	202
SlaI	CTCGAG	1 cut(s)	202
SmiMI	CAYNNNNRTG	2 cut(s)	177, 245
SmlI	CTYRAG	2 cut(s)	126, 202
SmoI	CTYRAG	2 cut(s)	126, 202
SspMI	CTAG	1 cut(s)	267
SstI	GAGCTC	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	438
TaaI	ACNGT	2 cut(s)	16, 179
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	5 cut(s)	149, 189, 203, 209, 262
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	1 cut(s)	523
Tru9I	TTAA	1 cut(s)	523
TscAI	CASTG	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	80, 84
TspRI	CASTG	1 cut(s)	238
XhoI	CTCGAG	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	380
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.