Rroxscaffold_1G00023130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013631
Physical Location & Seq
Forward (+)
28623094 .. 28623474
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00023130.1

Sequence Viewer

Length: 381 bp
ATGTCGAAAGCGCCTGAAACACACTATCATTACTGTGGAGTGATCGAACGGGTCCCCTCGAGTTCGAGCAAGAGATCTTCTCAGTTCAGTGAGTCCACACAAGTGGAAAAGAAAGTTCGAGCTAGCTACAAGGATGAGTATGGTGGAGGTTGGAGCAAGTTTACTGAGAGCTACAAGGCGCAAGAGTACGTGGACAAGAAAACTGGAGGCATGGGTTACAAGCAAGAAGCTAAGTATACCTCTACTGACAAGTATGTGGACAAGGAGCAAGGGTACACCACCGAGTATCATACCCAGGTGAAGATTCAGAAGACTGTTTACCCCAACAAGAGCTCAACTAGCAAGTCCAAGAACAACAAGGATAGCATCGGCTACTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.47

Weight (kDa)

9.29

Isoelectric Point (pI)

57.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 236
AfaI GTAC 2 cut(s) 188, 275
AjnI CCWGG 1 cut(s) 294
AleI CACNNNNGTG 1 cut(s) 101
AluBI AGCT 5 cut(s) 122, 126, 171, 230, 333
AluI AGCT 5 cut(s) 122, 126, 171, 230, 333
Alw21I GWGCWC 1 cut(s) 335
Ama87I CYCGRG 1 cut(s) 58
AspLEI GCGC 2 cut(s) 13, 181
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 310
AsuNHI GCTAGC 1 cut(s) 122
AvaI CYCGRG 1 cut(s) 58
AvaII GGWCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 335
BarI GAAGNNNNNNTAC 2 cut(s) 302, 334
BbsI GAAGAC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 335
BciT130I CCWGG 1 cut(s) 296
BfaI CTAG 2 cut(s) 123, 339
BfoI RGCGCY 1 cut(s) 14
BglII AGATCT 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 2 cut(s) 53, 54
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 1 cut(s) 375
BmtI GCTAGC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 317
BplI GAGNNNNNCTC 2 cut(s) 64, 96
BpmI CTGGAG 1 cut(s) 225
BsaAI YACGTR 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 294
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bse1I ACTGG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 139
BseMII CTCAG 2 cut(s) 95, 156
BseNI ACTGG 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 335
BsiHKCI CYCGRG 1 cut(s) 58
BslFI GGGAC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 38
BsoBI CYCGRG 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 335
Bsp143I GATC 2 cut(s) 42, 74
BspCNI CTCAG 2 cut(s) 94, 157
BspLI GGNNCC 2 cut(s) 53, 54
BspOI GCTAGC 1 cut(s) 126
BsrI ACTGG 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 2 cut(s) 42, 74
BssNAI GTATAC 1 cut(s) 237
Bst1107I GTATAC 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 2 cut(s) 35, 316
BstBAI YACGTR 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 3 cut(s) 81, 165, 231
BstF5I GGATG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 2 cut(s) 13, 181
BstKTI GATC 2 cut(s) 45, 77
BstMBI GATC 2 cut(s) 42, 74
BstMWI GCNNNNNNNGC 1 cut(s) 339
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 74
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 1 cut(s) 74
BstZ17I GTATAC 1 cut(s) 237
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 124
CfoI GCGC 2 cut(s) 13, 181
Cfr13I GGNCC 1 cut(s) 52
Csp6I GTAC 2 cut(s) 187, 274
CviAII CATG 1 cut(s) 211
CviJI RGCY 6 cut(s) 122, 126, 171, 230, 333, 372
CviKI_1 RGCY 6 cut(s) 122, 126, 171, 230, 333, 372
CviQI GTAC 2 cut(s) 187, 274
DdeI CTNAG 3 cut(s) 81, 165, 231
DpnI GATC 2 cut(s) 44, 76
DpnII GATC 2 cut(s) 42, 74
Ecl136II GAGCTC 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 333
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 335
FaeI CATG 1 cut(s) 214
FaiI YATR 5 cut(s) 141, 212, 237, 255, 291
FaqI GGGAC 1 cut(s) 38
FatI CATG 1 cut(s) 210
FblI GTMKAC 1 cut(s) 236
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 335
FspBI CTAG 2 cut(s) 123, 339
GlaI GCGC 2 cut(s) 12, 180
GsuI CTGGAG 1 cut(s) 225
HaeII RGCGCY 1 cut(s) 14
HhaI GCGC 2 cut(s) 13, 181
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 2 cut(s) 11, 179
HinP1I GCGC 2 cut(s) 11, 179
HinfI GANTC 2 cut(s) 92, 304
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 7 cut(s) 96, 162, 193, 237, 259, 276, 319
Hpy188I TCNGA 1 cut(s) 309
Hpy8I GTNNAC 7 cut(s) 96, 162, 193, 237, 259, 276, 319
HpyCH4III ACNGT 2 cut(s) 35, 316
HpyCH4IV ACGT 1 cut(s) 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 339
HpyF3I CTNAG 3 cut(s) 81, 165, 231
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 2 cut(s) 11, 179
KflI GGGWCCC 1 cut(s) 52
Kzo9I GATC 2 cut(s) 42, 74
LmnI GCTCC 2 cut(s) 153, 265
LpnPI CCDG 4 cut(s) 27, 189, 281, 308
LweI GCATC 1 cut(s) 375
MaeI CTAG 2 cut(s) 123, 339
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 215
MalI GATC 2 cut(s) 44, 76
MboI GATC 2 cut(s) 42, 74
MboII GAAGA 3 cut(s) 69, 313, 322
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 335
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 4 cut(s) 67, 140, 200, 250
MseI TTAA 1 cut(s) 379
MslI CAYNNNNRTG 2 cut(s) 33, 101
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 339
NdeII GATC 2 cut(s) 42, 74
NheI GCTAGC 1 cut(s) 122
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 2 cut(s) 53, 54
OliI CACNNNNGTG 1 cut(s) 101
PaeR7I CTCGAG 1 cut(s) 58
PfeI GAWTC 1 cut(s) 304
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
Ppu21I YACGTR 1 cut(s) 190
PpuMI RGGWCCY 1 cut(s) 52
Psp124BI GAGCTC 1 cut(s) 335
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 53, 54
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
PspXI VCTCGAGB 1 cut(s) 58
PsuI RGATCY 1 cut(s) 74
RsaI GTAC 2 cut(s) 188, 275
RsaNI GTAC 2 cut(s) 187, 274
RseI CAYNNNNRTG 2 cut(s) 33, 101
SacI GAGCTC 1 cut(s) 335
SaqAI TTAA 1 cut(s) 379
Sau3AI GATC 2 cut(s) 42, 74
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 1 cut(s) 335
SetI ASST 9 cut(s) 124, 128, 151, 173, 192, 232, 242, 300, 335
SfaNI GCATC 1 cut(s) 375
Sfr274I CTCGAG 1 cut(s) 58
SinI GGWCC 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 58
SmiMI CAYNNNNRTG 2 cut(s) 33, 101
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
SspMI CTAG 2 cut(s) 123, 339
SstI GAGCTC 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 35, 316
TaiI ACGT 1 cut(s) 192
TaqI TCGA 5 cut(s) 5, 45, 59, 65, 118
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 1 cut(s) 379
Tru9I TTAA 1 cut(s) 379
TscAI CASTG 1 cut(s) 94
TspRI CASTG 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 52
XhoI CTCGAG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 236
XspI CTAG 2 cut(s) 123, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.