Prupe.6G110500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013631
Physical Location & Seq
Forward (+)
7933367 .. 7934186
820 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G110500.1

Sequence Viewer

Length: 483 bp
ATGCCGAAGAAGCCTGATTCACAGCTTGCTGCTTTTGTTGGCTACCTACAGTTTATGCCTTTGAGCAACGGATCATCTTCTTCACAGCTCAATGAGTCTCAACAAGTTCAAATCAAAGATCGATATTCATACAAACATGCTTATGGTGGAGGGTCAAGCAGCTTTACTGGGAGCTGCAAGGCTGGAAAGTATGTGGACAAGAGGACTGGTGGCTTGGGTTACAAACAAGAGGCAAAGTACACCTCCACTGCCAAACATGTGAACAAGGAGCTAGGGTTTACCACTGAGTGCCAGACCCAGGTGAAGTACAAGAAGTCCGTTTACCCTAACAAGACCCAGGTGAAAAAGTCTGCTTCTCCTAACAAGACCAAAGTGCAGCGCAAGTGTGCTTGTCCTAACAAGACTCAAGTAAGGGTCCAGAAGTCTGCTTCTCCTTACAAGAGAGTAACCAAGTCCTACAGCAAACGTATTGACTATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.94

Weight (kDa)

9.97

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 79
AdeI CACNNNGTG 1 cut(s) 288
AfaI GTAC 2 cut(s) 239, 308
AfiI CCNNNNNNNGG 1 cut(s) 298
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 1 cut(s) 110
AjnI CCWGG 2 cut(s) 297, 336
AluBI AGCT 5 cut(s) 25, 88, 162, 174, 271
AluI AGCT 5 cut(s) 25, 88, 162, 174, 271
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 1 cut(s) 79
ApeKI GCWGC 4 cut(s) 29, 159, 174, 376
AspLEI GCGC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 415
AsuHPI GGTGA 2 cut(s) 313, 352
AvaII GGWCC 1 cut(s) 415
BarI GAAGNNNNNNTAC 2 cut(s) 305, 337
BbvI GCAGC 4 cut(s) 16, 161, 171, 388
BciT130I CCWGG 2 cut(s) 299, 338
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 1 cut(s) 272
BfmI CTRYAG 2 cut(s) 47, 457
BisI GCNGC 4 cut(s) 30, 160, 175, 377
BlsI GCNGC 4 cut(s) 31, 161, 176, 378
Bme1390I CCNGG 2 cut(s) 299, 338
Bme18I GGWCC 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 415
BmiI GGNNCC 1 cut(s) 416
BmrFI CCNGG 2 cut(s) 299, 338
BmrI ACTGGG 1 cut(s) 177
BmuI ACTGGG 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 390
Bsa29I ATCGAT 1 cut(s) 121
BsaJI CCNNGG 2 cut(s) 297, 336
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse1I ACTGG 2 cut(s) 172, 211
BseBI CCWGG 2 cut(s) 299, 338
BseCI ATCGAT 1 cut(s) 121
BseDI CCNNGG 2 cut(s) 297, 336
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 2 cut(s) 172, 211
BseXI GCAGC 4 cut(s) 16, 161, 171, 388
BsgI GTGCAG 1 cut(s) 395
BshVI ATCGAT 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 71, 118
BspCNI CTCAG 1 cut(s) 277
BspDI ATCGAT 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 416
BspPI GGATC 1 cut(s) 79
BsrI ACTGG 2 cut(s) 172, 211
BssECI CCNNGG 2 cut(s) 297, 336
BssMI GATC 2 cut(s) 71, 118
Bst2UI CCWGG 2 cut(s) 299, 338
Bst4CI ACNGT 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 285
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 2 cut(s) 74, 121
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 2 cut(s) 71, 118
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 2 cut(s) 299, 338
BstNSI RCATGY 2 cut(s) 140, 260
BstSCI CCNGG 2 cut(s) 297, 336
BstSFI CTRYAG 2 cut(s) 47, 457
BstV1I GCAGC 4 cut(s) 16, 161, 171, 388
Bsu15I ATCGAT 1 cut(s) 121
BsuTUI ATCGAT 1 cut(s) 121
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 246, 282
Cac8I GCNNGC 1 cut(s) 27
CfoI GCGC 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 415
ClaI ATCGAT 1 cut(s) 121
Csp6I GTAC 2 cut(s) 238, 307
CviAII CATG 2 cut(s) 137, 257
CviJI RGCY 9 cut(s) 13, 25, 42, 88, 162, 174, 182, 213, 271
CviKI_1 RGCY 9 cut(s) 13, 25, 42, 88, 162, 174, 182, 213, 271
CviQI GTAC 2 cut(s) 238, 307
DdeI CTNAG 1 cut(s) 285
DpnI GATC 2 cut(s) 73, 120
DpnII GATC 2 cut(s) 71, 118
DraIII CACNNNGTG 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 415
EcoRII CCWGG 2 cut(s) 297, 336
FaeI CATG 2 cut(s) 140, 260
FaiI YATR 6 cut(s) 56, 130, 138, 144, 192, 258
FatI CATG 2 cut(s) 136, 256
Fnu4HI GCNGC 4 cut(s) 30, 160, 175, 377
Fsp4HI GCNGC 4 cut(s) 30, 160, 175, 377
FspBI CTAG 1 cut(s) 272
GlaI GCGC 1 cut(s) 380
GluI GCNGC 4 cut(s) 30, 160, 175, 377
HhaI GCGC 1 cut(s) 381
Hin1II CATG 2 cut(s) 140, 260
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HinfI GANTC 3 cut(s) 17, 95, 403
HphI GGTGA 2 cut(s) 313, 352
Hpy166II GTNNAC 5 cut(s) 196, 240, 262, 279, 322
Hpy188III TCNNGA 1 cut(s) 418
Hpy8I GTNNAC 5 cut(s) 196, 240, 262, 279, 322
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 2 cut(s) 177, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 1 cut(s) 466
Hsp92II CATG 2 cut(s) 140, 260
HspAI GCGC 1 cut(s) 379
Kzo9I GATC 2 cut(s) 71, 118
LmnI GCTCC 2 cut(s) 171, 268
Lsp1109I GCAGC 4 cut(s) 16, 161, 171, 388
MaeI CTAG 1 cut(s) 272
MaeII ACGT 1 cut(s) 466
MaeIII GTNAC 2 cut(s) 218, 445
MalI GATC 2 cut(s) 73, 120
MboI GATC 2 cut(s) 71, 118
MboII GAAGA 3 cut(s) 19, 69, 72
MlyI GAGTC 2 cut(s) 104, 397
MnlI CCTC 4 cut(s) 143, 195, 223, 253
MslI CAYNNNNRTG 1 cut(s) 141
MspR9I CCNGG 2 cut(s) 299, 338
MvaI CCWGG 2 cut(s) 299, 338
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 2 cut(s) 71, 118
NlaIII CATG 2 cut(s) 140, 260
NlaIV GGNNCC 1 cut(s) 416
NspI RCATGY 2 cut(s) 140, 260
PciI ACATGT 1 cut(s) 256
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 4 cut(s) 31, 161, 176, 378
PleI GAGTC 2 cut(s) 103, 397
PpsI GAGTC 2 cut(s) 103, 397
PscI ACATGT 1 cut(s) 256
Psp6I CCWGG 2 cut(s) 297, 336
PspGI CCWGG 2 cut(s) 297, 336
PspN4I GGNNCC 1 cut(s) 416
PspPI GGNCC 1 cut(s) 415
RsaI GTAC 2 cut(s) 239, 308
RsaNI GTAC 2 cut(s) 238, 307
RseI CAYNNNNRTG 1 cut(s) 141
SatI GCNGC 4 cut(s) 30, 160, 175, 377
Sau3AI GATC 2 cut(s) 71, 118
Sau96I GGNCC 1 cut(s) 415
SchI GAGTC 2 cut(s) 104, 397
ScrFI CCNGG 2 cut(s) 299, 338
SfcI CTRYAG 2 cut(s) 47, 457
SinI GGWCC 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 2 cut(s) 297, 336
TaaI ACNGT 1 cut(s) 51
TaiI ACGT 1 cut(s) 469
TaqI TCGA 1 cut(s) 121
TatI WGTACW 2 cut(s) 237, 306
TfiI GAWTC 1 cut(s) 17
TscAI CASTG 2 cut(s) 253, 289
TseI GCWGC 4 cut(s) 29, 159, 174, 376
TspDTI ATGAA 1 cut(s) 117
TspGWI ACGGA 2 cut(s) 84, 307
TspRI CASTG 2 cut(s) 253, 289
VpaK11BI GGWCC 1 cut(s) 415
XceI RCATGY 2 cut(s) 140, 260
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.