Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015571

Physical Location & Seq

Genomic Coordinates Reverse (-)

3632443 .. 3633273

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGATAAGACACCATTTCCATAGCGAAGTCTGGCAACCAGAGATCCTCCCCGGGGTTTCAATTCCAAGCTGCAGCGATCTGTTCTCAATCAAGTTCCAGCTCTTCGACGTCACCAGAAGCAGCTGTCGCACAGAACAAGAAGGTGAAAATGTTACTAGTGACGACTTGGAAGAATCAAAGCTTGTAGCTGAAAGACAAACTAAACCACTCTCTCGTGTCCAGCTATTGTGTTTGAGGACTCGGGACACATGGTTGATCTGCACAGGCGCTCTTTCCAGCATGGGCGTCCCACAACATGAGCAGCCTGCTATTGTTGAAAAGATAGTCGAGGCATTGAGAGTTGCCGTCCCTTTCCGACCTATTTGCGTAGTCATCGAGGACATTGTGACTGTGCAGGAGTGCAATGGCGGTGATGAAAGTTCGAACCAAAAGAGATTTGATAACTGGGACGCTAAGAAAGAGGGAGAAGAGGAGGAGGAGTGTGTTATTTGTTTGGAGGACATTTCTGACTTCGGCCCCAAGAGCGTTACACCCTGCTCACACATTTATCATAGGGATTGCATCTGGAAGTGGCAAAAGGAGACTCAGAAGAAAGGTCACTTGTTCTCGTGTCCCGTGTGCCGATGCCATATTGCAGAGATGGCAGGCGAGCCGTCGCAACCACTTCCGTTGCCGGCATTGTCCCTGCAGCCCCCGCCGTATCAAATCATAAACGAAGAAGAAGACGATGTCGAGACGGACCCGCGGCCCGAACCGTCGTGGTGCGAGGTGGGGTGCACTTTAACAACTTTGCTGAGGATCCGATACTGTTTTCTAAGCTCTTGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

277

Amino Acids

31.42

Weight (kDa)

4.85

Isoelectric Point (pI)

67.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	160 - 208	5.8e-11	Ring finger domain
zf-RING_11	PF17123	160 - 188	2.7e-09	RING-like zinc finger
zf-RING_UBOX	PF13445	161 - 205	3.5e-08	RING-type zinc-finger
zf-C3HC4	PF00097	161 - 207	4.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015571)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06320 FvH4_6g41400
rosa_chinensis	RchiOBHm_Chr5g0012991
rosa_laevigata	RLG00000031975
rosa_multiflora	Rmu_sc0003892.1_g000024 Rmu_sc0005409.1_g000017 Rmu_sc0005409.1_g000018
rosa_roxburghii	Rroxscaffold_1G00062560 Rroxscaffold_1G00063580 Rroxscaffold_1G00063590
rosa_rugosa	Rorug05G0005800 Rorug05G0005900 Rorug05G0006000
rosa_samantha	Rh5BG096900 Rh5CG109100
rosa_wichuraiana	Rw5G008760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	111
AccII	CGCG	1 cut(s)	745
AciI	CCGC	4 cut(s)	408, 695, 743, 745
AclWI	GGATC	3 cut(s)	37, 793, 806
AcyI	GRCGYC	2 cut(s)	108, 285
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	2 cut(s)	60, 317
AhlI	ACTAGT	1 cut(s)	155
AluBI	AGCT	7 cut(s)	69, 100, 123, 181, 188, 223, 819
AluI	AGCT	7 cut(s)	69, 100, 123, 181, 188, 223, 819
Alw21I	GWGCWC	1 cut(s)	779
Alw26I	GTCTC	2 cut(s)	575, 728
Alw44I	GTGCAC	1 cut(s)	775
AlwI	GGATC	3 cut(s)	37, 793, 806
Ama87I	CYCGRG	2 cut(s)	50, 240
AoxI	GGCC	2 cut(s)	514, 746
ApaLI	GTGCAC	1 cut(s)	775
ApeKI	GCWGC	5 cut(s)	69, 72, 120, 301, 688
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	3 cut(s)	515, 739, 747
AsuC2I	CCSGG	2 cut(s)	51, 52
AsuHPI	GGTGA	3 cut(s)	103, 155, 422
AsuII	TTCGAA	1 cut(s)	422
AvaI	CYCGRG	2 cut(s)	50, 240
AvaII	GGWCC	1 cut(s)	739
BaeGI	GKGCMC	1 cut(s)	779
BamHI	GGATCC	1 cut(s)	798
BauI	CACGAG	2 cut(s)	213, 607
BbsI	GAAGAC	1 cut(s)	729
Bbv12I	GWGCWC	1 cut(s)	779
BbvCI	CCTCAGC	1 cut(s)	794
BbvI	GCAGC	5 cut(s)	56, 84, 132, 313, 700
BccI	CCATC	1 cut(s)	634
BceAI	ACGGC	3 cut(s)	329, 637, 682
BcgI	CGANNNNNNTGC	2 cut(s)	345, 379
BcnI	CCSGG	2 cut(s)	51, 52
BcoDI	GTCTC	2 cut(s)	575, 728
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	2 cut(s)	70, 686
BfoI	RGCGCY	1 cut(s)	270
BisI	GCNGC	6 cut(s)	70, 73, 121, 302, 689, 746
BlsI	GCNGC	6 cut(s)	71, 74, 122, 303, 690, 747
Bme1390I	CCNGG	2 cut(s)	51, 52
Bme18I	GGWCC	1 cut(s)	739
BmeT110I	CYCGRG	2 cut(s)	50, 240
BmgT120I	GGNCC	3 cut(s)	515, 739, 747
BmiI	GGNNCC	3 cut(s)	517, 741, 800
BmrFI	CCNGG	2 cut(s)	51, 52
BmrI	ACTGGG	1 cut(s)	454
BmsI	GCATC	2 cut(s)	570, 614
BmuI	ACTGGG	1 cut(s)	454
BpiI	GAAGAC	1 cut(s)	729
Bpu10I	CCTNAGC	1 cut(s)	794
Bpu14I	TTCGAA	1 cut(s)	422
BpuMI	CCSGG	2 cut(s)	51, 52
BsaHI	GRCGYC	2 cut(s)	108, 285
BsaJI	CCNNGG	4 cut(s)	49, 50, 51, 743
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse118I	RCCGGY	1 cut(s)	673
Bse1I	ACTGG	1 cut(s)	449
Bse3DI	GCAATG	1 cut(s)	409
BseDI	CCNNGG	4 cut(s)	49, 50, 51, 743
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	409
BseMII	CTCAG	2 cut(s)	599, 785
BseNI	ACTGG	1 cut(s)	449
BseRI	GAGGAG	3 cut(s)	485, 488, 491
BseSI	GKGCMC	1 cut(s)	779
BseXI	GCAGC	5 cut(s)	56, 84, 132, 313, 700
BsgI	GTGCAG	2 cut(s)	244, 413
Bsh1236I	CGCG	1 cut(s)	745
BshFI	GGCC	2 cut(s)	516, 748
BsiHKAI	GWGCWC	1 cut(s)	779
BsiHKCI	CYCGRG	2 cut(s)	50, 240
BsiSI	CCGG	2 cut(s)	51, 674
BslFI	GGGAC	6 cut(s)	257, 272, 332, 461, 597, 667
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	2 cut(s)	575, 728
BsmBI	CGTCTC	1 cut(s)	728
BsmFI	GGGAC	6 cut(s)	257, 272, 332, 461, 597, 667
BsnI	GGCC	2 cut(s)	516, 748
BsoBI	CYCGRG	2 cut(s)	50, 240
Bsp119I	TTCGAA	1 cut(s)	422
Bsp1286I	GDGCHC	1 cut(s)	779
Bsp143I	GATC	4 cut(s)	42, 76, 255, 798
BspACI	CCGC	4 cut(s)	408, 695, 743, 745
BspANI	GGCC	2 cut(s)	516, 748
BspCNI	CTCAG	2 cut(s)	598, 786
BspFNI	CGCG	1 cut(s)	745
BspLI	GGNNCC	3 cut(s)	517, 741, 800
BspMAI	CTGCAG	2 cut(s)	74, 690
BspPI	GGATC	3 cut(s)	37, 793, 806
BspQI	GCTCTTC	1 cut(s)	107
BspT104I	TTCGAA	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	409
BsrFI	RCCGGY	1 cut(s)	673
BsrI	ACTGG	1 cut(s)	449
BssAI	RCCGGY	1 cut(s)	673
BssECI	CCNNGG	4 cut(s)	49, 50, 51, 743
BssMI	GATC	4 cut(s)	42, 76, 255, 798
BssNI	GRCGYC	2 cut(s)	108, 285
BssSI	CACGAG	2 cut(s)	213, 607
Bst2BI	CACGAG	2 cut(s)	213, 607
Bst4CI	ACNGT	3 cut(s)	391, 756, 809
Bst6I	CTCTTC	2 cut(s)	107, 462
BstACI	GRCGYC	2 cut(s)	108, 285
BstBI	TTCGAA	1 cut(s)	422
BstC8I	GCNNGC	4 cut(s)	306, 646, 650, 675
BstDEI	CTNAG	4 cut(s)	453, 585, 794, 815
BstDSI	CCRYGG	1 cut(s)	743
BstFNI	CGCG	1 cut(s)	745
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	4 cut(s)	45, 79, 258, 801
BstMAI	GTCTC	2 cut(s)	575, 728
BstMBI	GATC	4 cut(s)	42, 76, 255, 798
BstMWI	GCNNNNNNNGC	4 cut(s)	126, 522, 641, 694
BstSCI	CCNGG	2 cut(s)	49, 50
BstSFI	CTRYAG	2 cut(s)	70, 686
BstSLI	GKGCMC	1 cut(s)	779
BstUI	CGCG	1 cut(s)	745
BstV1I	GCAGC	5 cut(s)	56, 84, 132, 313, 700
BstV2I	GAAGAC	1 cut(s)	729
BstX2I	RGATCY	2 cut(s)	42, 798
BstYI	RGATCY	2 cut(s)	42, 798
BsuRI	GGCC	2 cut(s)	516, 748
BtgI	CCRYGG	1 cut(s)	743
Cac8I	GCNNGC	4 cut(s)	306, 646, 650, 675
CfoI	GCGC	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	673
Cfr13I	GGNCC	3 cut(s)	515, 739, 747
Cfr42I	CCGCGG	1 cut(s)	746
Cfr9I	CCCGGG	1 cut(s)	50
CseI	GACGC	2 cut(s)	274, 458
CspCI	CAANNNNNGTGG	2 cut(s)	651, 686
CviAII	CATG	3 cut(s)	249, 280, 296
DdeI	CTNAG	4 cut(s)	453, 585, 794, 815
DpnI	GATC	4 cut(s)	44, 78, 257, 800
DpnII	GATC	4 cut(s)	42, 76, 255, 798
Eam1104I	CTCTTC	2 cut(s)	107, 462
EarI	CTCTTC	2 cut(s)	107, 462
Eco47I	GGWCC	1 cut(s)	739
Eco88I	CYCGRG	2 cut(s)	50, 240
Esp3I	CGTCTC	1 cut(s)	728
FaeI	CATG	3 cut(s)	252, 283, 299
FaiI	YATR	7 cut(s)	21, 250, 281, 297, 552, 630, 710
FaqI	GGGAC	6 cut(s)	257, 272, 332, 461, 597, 667
FatI	CATG	3 cut(s)	248, 279, 295
FauI	CCCGC	2 cut(s)	702, 750
Fnu4HI	GCNGC	6 cut(s)	70, 73, 121, 302, 689, 746
Fsp4HI	GCNGC	6 cut(s)	70, 73, 121, 302, 689, 746
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	6 cut(s)	70, 73, 121, 302, 689, 746
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	516, 748
HapII	CCGG	2 cut(s)	51, 674
HgaI	GACGC	2 cut(s)	274, 458
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	2 cut(s)	108, 285
Hin1II	CATG	3 cut(s)	252, 283, 299
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	3 cut(s)	173, 238, 583
HpaII	CCGG	2 cut(s)	51, 674
HphI	GGTGA	3 cut(s)	103, 155, 422
Hpy166II	GTNNAC	1 cut(s)	777
Hpy188I	TCNGA	4 cut(s)	356, 508, 588, 803
Hpy188III	TCNNGA	3 cut(s)	242, 565, 733
Hpy8I	GTNNAC	1 cut(s)	777
Hpy99I	CGWCG	3 cut(s)	110, 658, 760
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	3 cut(s)	391, 756, 809
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	8 cut(s)	72, 261, 394, 402, 561, 635, 688, 777
HpyF10VI	GCNNNNNNNGC	4 cut(s)	126, 522, 641, 694
HpyF3I	CTNAG	4 cut(s)	453, 585, 794, 815
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	2 cut(s)	108, 285
Hsp92II	CATG	3 cut(s)	252, 283, 299
HspAI	GCGC	1 cut(s)	267
KroI	GCCGGC	1 cut(s)	673
KroNI	GCCGGC	1 cut(s)	675
KspI	CCGCGG	1 cut(s)	746
Kzo9I	GATC	4 cut(s)	42, 76, 255, 798
LguI	GCTCTTC	1 cut(s)	107
Lsp1109I	GCAGC	5 cut(s)	56, 84, 132, 313, 700
LweI	GCATC	2 cut(s)	570, 614
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	6 cut(s)	109, 151, 158, 385, 526, 596
MalI	GATC	4 cut(s)	44, 78, 257, 800
MboI	GATC	4 cut(s)	42, 76, 255, 798
MboII	GAAGA	7 cut(s)	94, 182, 479, 601, 728, 731, 734
MflI	RGATCY	2 cut(s)	42, 798
MhlI	GDGCHC	1 cut(s)	779
MluCI	AATT	1 cut(s)	60
MlyI	GAGTC	2 cut(s)	232, 577
MmeI	TCCRAC	1 cut(s)	379
MroNI	GCCGGC	1 cut(s)	673
MseI	TTAA	2 cut(s)	782, 829
MspA1I	CMGCKG	2 cut(s)	123, 745
MspI	CCGG	2 cut(s)	51, 674
MspR9I	CCNGG	2 cut(s)	51, 52
MvnI	CGCG	1 cut(s)	745
MwoI	GCNNNNNNNGC	4 cut(s)	126, 522, 641, 694
NaeI	GCCGGC	1 cut(s)	675
NciI	CCSGG	2 cut(s)	51, 52
NdeII	GATC	4 cut(s)	42, 76, 255, 798
NgoMIV	GCCGGC	1 cut(s)	673
NlaIII	CATG	3 cut(s)	252, 283, 299
NlaIV	GGNNCC	3 cut(s)	517, 741, 800
NmuCI	GTSAC	4 cut(s)	109, 158, 385, 596
NspV	TTCGAA	1 cut(s)	422
PciSI	GCTCTTC	1 cut(s)	107
PdiI	GCCGGC	1 cut(s)	675
PfeI	GAWTC	1 cut(s)	173
PflFI	GACNNNGTC	1 cut(s)	728
PkrI	GCNGC	6 cut(s)	71, 74, 122, 303, 690, 747
PleI	GAGTC	2 cut(s)	232, 577
PpsI	GAGTC	2 cut(s)	232, 577
PspN4I	GGNNCC	3 cut(s)	517, 741, 800
PspPI	GGNCC	3 cut(s)	515, 739, 747
PstI	CTGCAG	2 cut(s)	74, 690
PsuI	RGATCY	2 cut(s)	42, 798
PsyI	GACNNNGTC	1 cut(s)	728
PvuII	CAGCTG	1 cut(s)	123
SacII	CCGCGG	1 cut(s)	746
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	782, 829
SatI	GCNGC	6 cut(s)	70, 73, 121, 302, 689, 746
Sau3AI	GATC	4 cut(s)	42, 76, 255, 798
Sau96I	GGNCC	3 cut(s)	515, 739, 747
SchI	GAGTC	2 cut(s)	232, 577
ScrFI	CCNGG	2 cut(s)	51, 52
SduI	GDGCHC	1 cut(s)	779
SfaNI	GCATC	2 cut(s)	570, 614
SfcI	CTRYAG	2 cut(s)	70, 686
Sfr303I	CCGCGG	1 cut(s)	746
SfuI	TTCGAA	1 cut(s)	422
SgrBI	CCGCGG	1 cut(s)	746
SinI	GGWCC	1 cut(s)	739
SmaI	CCCGGG	1 cut(s)	52
SpeI	ACTAGT	1 cut(s)	155
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	4 cut(s)	408, 695, 743, 745
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	49, 50
TaaI	ACNGT	3 cut(s)	391, 756, 809
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	5 cut(s)	105, 327, 375, 422, 732
TasI	AATT	1 cut(s)	60
TauI	GCSGC	1 cut(s)	748
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	2 cut(s)	782, 829
Tru9I	TTAA	2 cut(s)	782, 829
TseFI	GTSAC	4 cut(s)	109, 158, 385, 596
TseI	GCWGC	5 cut(s)	69, 72, 120, 301, 688
Tsp45I	GTSAC	4 cut(s)	109, 158, 385, 596
TspDTI	ATGAA	1 cut(s)	429
TspGWI	ACGGA	2 cut(s)	657, 752
TspMI	CCCGGG	1 cut(s)	50
Tth111I	GACNNNGTC	1 cut(s)	728
VneI	GTGCAC	1 cut(s)	775
VpaK11BI	GGWCC	1 cut(s)	739
XmaI	CCCGGG	1 cut(s)	50
XspI	CTAG	1 cut(s)	156
ZraI	GACGTC	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.