Rmu_sc0005409.1_g000018

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005409.1
OG0015571
Physical Location & Seq
Reverse (-)
79700 .. 80548
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005409.1_g000018.1.cds

Sequence Viewer

Length: 849 bp
atgataagacgctatttccatagcgaagtgtggcaaccagaaaccctcactgaggtttcaattccaacctgcagcgacctgttcccgatcacattccagctcttcgaggtcaccagaagcagcggtcggacagcagaagaagatgaaaatgctactagtgagggattagaagaagcaaagcttgtcgccgaaagacaaactataccactctctcgtgcccagctattgtgtttgaggactcaggacacatgggcaatctgcacagggactctttccagcatgggcgtcccacaagatgagcagcctgctattgttgcaaagatattcgaggccttgaaagtcgccgtccccttccggcctatctgcgtggtcatcaaggacattgtgaccgtgcaagagcgcagtggtggggatgaaagtttgaaaaaagtgagatttgatagcttagaatttaaggaagaggaacaggaggaggaggagtgtgttatttgtctggagggcctttctgactctgactccaagagcgttacgcacttaccctgctcacacatttatcatggagattgcattctgaagtggcaagagaagactcagaagagtcgtctcttgtgctcgtgccccgtgtgccgatgcccaattcctattgtggagatggccggggagccgtcacaacgactttcgacattgtcccggcctccgcagtaccaatacatatatgaagaagatgtcgacacggacccgctacccgaaccctcgtggtgcgagcgcgggttggttgaggtggttggctgtactataactactctgctgatgatcccgctctgttttgtaatgtgcccttgcttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000815 GO:0000920 GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006914 GO:0006996 GO:0007032 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008289 GO:0008333 GO:0009056 GO:0009987 GO:0010008 GO:0010256 GO:0010564 GO:0010824 GO:0012505 GO:0016020 GO:0016032 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0019058 GO:0019068 GO:0019899 GO:0022411 GO:0022607 GO:0031090 GO:0031210 GO:0031410 GO:0031982 GO:0032386 GO:0032509 GO:0032510 GO:0032879 GO:0032886 GO:0032984 GO:0032991 GO:0033043 GO:0034622 GO:0036257 GO:0036258 GO:0036452 GO:0039702 GO:0040012 GO:0040013 GO:0040017 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046605 GO:0046755 GO:0046907 GO:0046983 GO:0048284 GO:0048518 GO:0048519 GO:0048524 GO:0048525 GO:0050789 GO:0050792 GO:0050794 GO:0050997 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051258 GO:0051259 GO:0051291 GO:0051301 GO:0051493 GO:0051641 GO:0051649 GO:0051704 GO:0051726 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0061763 GO:0061919 GO:0065003 GO:0065007 GO:0070405 GO:0070507 GO:0070925 GO:0071840 GO:0071944 GO:0071985 GO:0090174 GO:0097352 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1902186 GO:1902187 GO:1902188 GO:1903649 GO:1903900 GO:1903901 GO:1903902 GO:1990381 GO:2000641
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7 zf-RING_2

Protein Analysis

282

Amino Acids

31.8

Weight (kDa)

4.64

Isoelectric Point (pI)

56.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 77
AccBSI CCGCTC 1 cut(s) 820
AccI GTMKAC 1 cut(s) 729
AccII CGCG 1 cut(s) 768
AciI CCGC 5 cut(s) 123, 698, 740, 768, 818
AclWI GGATC 1 cut(s) 808
AcoI YGGCCR 1 cut(s) 654
AcsI RAATTY 1 cut(s) 449
AcuI CTGAAG 1 cut(s) 593
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 2 cut(s) 704, 793
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 3 cut(s) 60, 337, 424
AhlI ACTAGT 1 cut(s) 155
AluBI AGCT 4 cut(s) 100, 181, 223, 444
AluI AGCT 4 cut(s) 100, 181, 223, 444
Alw21I GWGCWC 1 cut(s) 614
Alw26I GTCTC 1 cut(s) 608
AlwI GGATC 1 cut(s) 808
AoxI GGCC 5 cut(s) 330, 356, 499, 654, 692
ApeKI GCWGC 3 cut(s) 72, 120, 301
ApoI RAATTY 1 cut(s) 449
AspLEI GCGC 2 cut(s) 402, 768
AspS9I GGNCC 2 cut(s) 499, 736
AsuC2I CCSGG 2 cut(s) 658, 691
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 736
BaeGI GKGCMC 3 cut(s) 220, 620, 839
BauI CACGAG 3 cut(s) 213, 613, 754
BbsI GAAGAC 1 cut(s) 593
Bbv12I GWGCWC 1 cut(s) 614
BbvI GCAGC 3 cut(s) 84, 132, 313
BccI CCATC 1 cut(s) 646
BceAI ACGGC 2 cut(s) 329, 649
BcnI CCSGG 2 cut(s) 658, 691
BcoDI GTCTC 1 cut(s) 608
BcuI ACTAGT 1 cut(s) 155
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 70
BfuAI ACCTGC 1 cut(s) 77
BisI GCNGC 3 cut(s) 73, 121, 302
BlsI GCNGC 3 cut(s) 74, 122, 303
Bme1390I CCNGG 2 cut(s) 658, 691
Bme18I GGWCC 1 cut(s) 736
BmgT120I GGNCC 2 cut(s) 499, 736
BmiI GGNNCC 2 cut(s) 663, 738
BmrFI CCNGG 2 cut(s) 658, 691
BmsI GCATC 1 cut(s) 620
BpiI GAAGAC 1 cut(s) 593
BpmI CTGGAG 1 cut(s) 515
BpuMI CCSGG 2 cut(s) 658, 691
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 657
BsaXI ACNNNNNCTCC 4 cut(s) 464, 494, 500, 530
Bsc4I CCNNNNNNNGG 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 657
BseGI GGATG 1 cut(s) 418
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 3 cut(s) 42, 254, 605
BseRI GAGGAG 3 cut(s) 485, 488, 491
BseSI GKGCMC 3 cut(s) 220, 620, 839
BseXI GCAGC 3 cut(s) 84, 132, 313
BseYI CCCAGC 1 cut(s) 219
BsgI GTGCAG 1 cut(s) 244
Bsh1236I CGCG 1 cut(s) 768
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 5 cut(s) 332, 358, 501, 656, 694
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 614
BsiSI CCGG 3 cut(s) 355, 657, 691
BslFI GGGAC 4 cut(s) 272, 280, 332, 673
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 608
BsmBI CGTCTC 1 cut(s) 608
BsmFI GGGAC 4 cut(s) 272, 280, 332, 673
BsmI GAATGC 1 cut(s) 567
BsnI GGCC 5 cut(s) 332, 358, 501, 656, 694
Bsp1286I GDGCHC 4 cut(s) 220, 614, 620, 839
Bsp143I GATC 2 cut(s) 87, 813
BspACI CCGC 5 cut(s) 123, 698, 740, 768, 818
BspANI GGCC 5 cut(s) 332, 358, 501, 656, 694
BspCNI CTCAG 3 cut(s) 43, 253, 604
BspFNI CGCG 1 cut(s) 768
BspLI GGNNCC 2 cut(s) 663, 738
BspMAI CTGCAG 1 cut(s) 74
BspMI ACCTGC 1 cut(s) 77
BspPI GGATC 1 cut(s) 808
BspQI GCTCTTC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 820
BssECI CCNNGG 1 cut(s) 657
BssMI GATC 2 cut(s) 87, 813
BssNI GRCGYC 1 cut(s) 285
BssSI CACGAG 3 cut(s) 213, 613, 754
Bst2BI CACGAG 3 cut(s) 213, 613, 754
Bst4CI ACNGT 1 cut(s) 391
Bst6I CTCTTC 3 cut(s) 107, 453, 590
BstACI GRCGYC 1 cut(s) 285
BstC8I GCNNGC 2 cut(s) 306, 764
BstDEI CTNAG 4 cut(s) 51, 240, 445, 591
BstEII GGTNACC 1 cut(s) 109
BstENI CCTNNNNNAGG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 418
BstFNI CGCG 1 cut(s) 768
BstHHI GCGC 2 cut(s) 402, 768
BstKTI GATC 2 cut(s) 90, 816
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 2 cut(s) 87, 813
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 314, 624
BstPI GGTNACC 1 cut(s) 109
BstSCI CCNGG 2 cut(s) 656, 689
BstSFI CTRYAG 1 cut(s) 70
BstSLI GKGCMC 3 cut(s) 220, 620, 839
BstUI CGCG 1 cut(s) 768
BstV1I GCAGC 3 cut(s) 84, 132, 313
BstV2I GAAGAC 1 cut(s) 593
BsuRI GGCC 5 cut(s) 332, 358, 501, 656, 694
BtsCI GGATG 1 cut(s) 418
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 2 cut(s) 48, 409
BveI ACCTGC 1 cut(s) 77
Cac8I GCNNGC 2 cut(s) 306, 764
CfoI GCGC 2 cut(s) 402, 768
Cfr13I GGNCC 2 cut(s) 499, 736
CseI GACGC 2 cut(s) 18, 274
Csp6I GTAC 2 cut(s) 703, 792
CviAII CATG 3 cut(s) 249, 280, 557
CviQI GTAC 2 cut(s) 703, 792
DdeI CTNAG 4 cut(s) 51, 240, 445, 591
DpnI GATC 2 cut(s) 89, 815
DpnII GATC 2 cut(s) 87, 813
EaeI YGGCCR 1 cut(s) 654
Eam1104I CTCTTC 3 cut(s) 107, 453, 590
EarI CTCTTC 3 cut(s) 107, 453, 590
Eco147I AGGCCT 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 736
Eco57I CTGAAG 1 cut(s) 593
Eco91I GGTNACC 1 cut(s) 109
EcoNI CCTNNNNNAGG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 499
EcoO65I GGTNACC 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 608
FaeI CATG 3 cut(s) 252, 283, 560
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FaqI GGGAC 4 cut(s) 272, 280, 332, 673
FatI CATG 3 cut(s) 248, 279, 556
FauI CCCGC 3 cut(s) 747, 761, 825
FblI GTMKAC 1 cut(s) 729
Fnu4HI GCNGC 3 cut(s) 73, 121, 302
FokI GGATG 1 cut(s) 425
Fsp4HI GCNGC 3 cut(s) 73, 121, 302
FspBI CTAG 1 cut(s) 156
GlaI GCGC 2 cut(s) 401, 767
GluI GCNGC 3 cut(s) 73, 121, 302
GsaI CCCAGC 1 cut(s) 223
GsuI CTGGAG 1 cut(s) 515
HaeIII GGCC 5 cut(s) 332, 358, 501, 656, 694
HapII CCGG 3 cut(s) 355, 657, 691
HgaI GACGC 2 cut(s) 18, 274
HhaI GCGC 2 cut(s) 402, 768
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 3 cut(s) 252, 283, 560
Hin6I GCGC 2 cut(s) 400, 766
HinP1I GCGC 2 cut(s) 400, 766
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 6 cut(s) 238, 268, 509, 515, 589, 598
HpaII CCGG 3 cut(s) 355, 657, 691
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 730
Hpy188I TCNGA 5 cut(s) 129, 508, 514, 573, 594
Hpy188III TCNNGA 3 cut(s) 85, 242, 494
Hpy8I GTNNAC 1 cut(s) 730
HpyAV CCTTC 1 cut(s) 361
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4V TGCA 5 cut(s) 72, 261, 317, 394, 567
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 624
HpyF3I CTNAG 4 cut(s) 51, 240, 445, 591
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 3 cut(s) 252, 283, 560
HspAI GCGC 2 cut(s) 400, 766
Kzo9I GATC 2 cut(s) 87, 813
LguI GCTCTTC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 661
Lsp1109I GCAGC 3 cut(s) 84, 132, 313
LweI GCATC 1 cut(s) 620
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 4 cut(s) 109, 385, 526, 666
MalI GATC 2 cut(s) 89, 815
MbiI CCGCTC 1 cut(s) 820
MboI GATC 2 cut(s) 87, 813
MboII GAAGA 9 cut(s) 94, 149, 152, 182, 470, 598, 607, 731, 734
MhlI GDGCHC 4 cut(s) 220, 614, 620, 839
MluCI AATT 3 cut(s) 60, 449, 636
MlyI GAGTC 6 cut(s) 232, 262, 503, 509, 583, 607
MmeI TCCRAC 2 cut(s) 89, 107
MseI TTAA 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 3 cut(s) 355, 657, 691
MspR9I CCNGG 2 cut(s) 658, 691
Mva1269I GAATGC 1 cut(s) 567
MvnI CGCG 1 cut(s) 768
MwoI GCNNNNNNNGC 2 cut(s) 314, 624
NciI CCSGG 2 cut(s) 658, 691
NdeII GATC 2 cut(s) 87, 813
NlaIII CATG 3 cut(s) 252, 283, 560
NlaIV GGNNCC 2 cut(s) 663, 738
NmuCI GTSAC 3 cut(s) 109, 385, 666
PceI AGGCCT 1 cut(s) 332
PciSI GCTCTTC 1 cut(s) 107
PctI GAATGC 1 cut(s) 567
PflFI GACNNNGTC 1 cut(s) 685
PkrI GCNGC 3 cut(s) 74, 122, 303
PleI GAGTC 6 cut(s) 232, 262, 503, 509, 583, 606
PpsI GAGTC 6 cut(s) 232, 262, 503, 509, 583, 606
PspEI GGTNACC 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 219
PspN4I GGNNCC 2 cut(s) 663, 738
PspPI GGNCC 2 cut(s) 499, 736
PstI CTGCAG 1 cut(s) 74
PsyI GACNNNGTC 1 cut(s) 685
RsaI GTAC 2 cut(s) 704, 793
RsaNI GTAC 2 cut(s) 703, 792
SalI GTCGAC 1 cut(s) 728
SapI GCTCTTC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 3 cut(s) 73, 121, 302
Sau3AI GATC 2 cut(s) 87, 813
Sau96I GGNCC 2 cut(s) 499, 736
SchI GAGTC 6 cut(s) 232, 262, 503, 509, 583, 607
ScrFI CCNGG 2 cut(s) 658, 691
SduI GDGCHC 4 cut(s) 220, 614, 620, 839
SetI ASST 9 cut(s) 57, 71, 81, 102, 111, 183, 225, 446, 783
SfaNI GCATC 1 cut(s) 620
SfcI CTRYAG 1 cut(s) 70
SinI GGWCC 1 cut(s) 736
SpeI ACTAGT 1 cut(s) 155
Sse9I AATT 3 cut(s) 60, 449, 636
SseBI AGGCCT 1 cut(s) 332
SsiI CCGC 5 cut(s) 123, 698, 740, 768, 818
SspMI CTAG 1 cut(s) 156
StuI AGGCCT 1 cut(s) 332
StyD4I CCNGG 2 cut(s) 656, 689
TaaI ACNGT 1 cut(s) 391
TaqI TCGA 4 cut(s) 105, 327, 680, 729
TasI AATT 3 cut(s) 60, 449, 636
TatI WGTACW 1 cut(s) 791
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 2 cut(s) 55, 409
TseFI GTSAC 3 cut(s) 109, 385, 666
TseI GCWGC 3 cut(s) 72, 120, 301
Tsp45I GTSAC 3 cut(s) 109, 385, 666
TspDTI ATGAA 3 cut(s) 159, 429, 732
TspGWI ACGGA 1 cut(s) 749
TspRI CASTG 2 cut(s) 55, 409
Tth111I GACNNNGTC 1 cut(s) 685
VpaK11BI GGWCC 1 cut(s) 736
XagI CCTNNNNNAGG 1 cut(s) 50
XapI RAATTY 1 cut(s) 449
XmiI GTMKAC 1 cut(s) 729
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.