Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015571

Physical Location & Seq

Genomic Coordinates Forward (+)

32556712 .. 32557899

Gene Structure 1188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g41400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTCCATCATCGATATACCTGCAAGCATGGTCACCATCGATAAACCCGACATCGTGCGAATGATAGCTAAGGTTAGGAGCATCATCCATGAGTTTACCAGAATCCATAATACCAATGAAGCGAGACGGGATAGGTCAGAAGATAATATCCAGCAATGTGTTATCTGTATGGATGAAATTTCTAGCTCTGAAAATAATGTGCCTATTGCTCGCTTATCCTCCTGCCCACACATTTTTCATGCGAATTGTGTAGAAAAATGGAGGGAGACGGGTCGTAGCAATGCTAACTTGTGCCCCGTTTGTAGAGTCCGAATGGAGGTCGGAACCCGCAGCATGTTCCGACCTGCTGTCGCCGGCGAGACAAGAAGAACTTTAAGCACCATATCCAGAAGATCATTGATGATATGGCTCAGCAACGTTCAGCCATCTAGACCCTTGAGGCTAAAATGGGATATGTATGAGCAGGTTCTCATGTTGGCTGGGAATAATCCTGAGATGTTTATGGGCGTATGTCTCTTGTGCTGCTGCATTCTATGTGCGCTGATAATTAAGTCACGCTTGCTCATGAATGTACTTGGTGCAGTGTTCAACTTTTTTATATCTCGTAGTTTGGTCATCATCTTCTTGGGGACCATAACATATTGGTACAGAAGATCACTGATAATATGGCTCTCCGGCTTGCAGCCATCTAGAACCTTGAGGCTGAAGTGGGATATGCATAAGCAGGAGGTTCTCATGTTGGCTGGGAATCCTAAGATGTTGATGCTCGTATGTCTCTTAAGCTACCTTTTACATTGGCAGCTAATTAAGCCAATCTTGGAGTTATTATTTCATCCACTGATGAACGTTCTTGAGGCACTGTTCAACTTTTTCATACCACGTATTTTGGTCATCATCTTCTTCGGGACCATGATATATTGGTACAGAAGATCATTGAAGATATGGCTCACCGACAGGCAGCCATCTAGACCCTTGTGGCAAGAGCGGGATCTTATACATGTTCTCACGTTGGCTGGGATGTTGATGCTCGTAGGTCTCTCGTGTTACCTTTTACATGCGCAGCTAATTAAGCCACTCTTGGAGTTCTGTTATCATGCGCTCATGAAAGTTCTTCATGCATTGTTTAACCGTGTCATGCCTGCTACGTTAGTATTTGTTTTGTGTCGGCACTACAATACTTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

396

Amino Acids

46.11

Weight (kDa)

9.66

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	51 - 102	2.2e-10	Ring finger domain
zf-rbx1	PF12678	53 - 102	7e-07	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	68 - 107	3.6e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015571)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06320 FvH4_6g41400
rosa_chinensis	RchiOBHm_Chr5g0012991
rosa_laevigata	RLG00000031975
rosa_multiflora	Rmu_sc0003892.1_g000024 Rmu_sc0005409.1_g000017 Rmu_sc0005409.1_g000018
rosa_roxburghii	Rroxscaffold_1G00062560 Rroxscaffold_1G00063580 Rroxscaffold_1G00063590
rosa_rugosa	Rorug05G0005800 Rorug05G0005900 Rorug05G0006000
rosa_samantha	Rh5BG096900 Rh5CG109100
rosa_wichuraiana	Rw5G008760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1059
Acc36I	ACCTGC	3 cut(s)	28, 352, 454
AccBSI	CCGCTC	1 cut(s)	985
AciI	CCGC	2 cut(s)	328, 985
AclI	AACGTT	2 cut(s)	417, 846
AclWI	GGATC	1 cut(s)	996
AcsI	RAATTY	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	725
AfaI	GTAC	3 cut(s)	573, 647, 923
AfiI	CCNNNNNNNGG	1 cut(s)	316
AflII	CTTAAG	1 cut(s)	778
AflIII	ACRYGT	1 cut(s)	997
AgsI	TTSAA	4 cut(s)	589, 865, 937, 1182
AhdI	GACNNNNNGTC	1 cut(s)	347
AluBI	AGCT	5 cut(s)	68, 186, 783, 802, 1063
AluI	AGCT	5 cut(s)	68, 186, 783, 802, 1063
Alw26I	GTCTC	6 cut(s)	118, 260, 353, 518, 779, 1040
AlwI	GGATC	1 cut(s)	996
ApeKI	GCWGC	7 cut(s)	330, 522, 525, 682, 799, 958, 1060
ApoI	RAATTY	1 cut(s)	177
AspLEI	GCGC	3 cut(s)	541, 1060, 1099
AspS9I	GGNCC	2 cut(s)	630, 906
AsuHPI	GGTGA	2 cut(s)	25, 940
AvaII	GGWCC	2 cut(s)	630, 906
BaeGI	GKGCMC	1 cut(s)	296
BauI	CACGAG	1 cut(s)	1039
BbvI	GCAGC	7 cut(s)	342, 509, 512, 694, 811, 970, 1072
BccI	CCATC	5 cut(s)	14, 44, 433, 694, 970
BcgI	CGANNNNNNTGC	1 cut(s)	36
BcoDI	GTCTC	6 cut(s)	118, 260, 353, 518, 779, 1040
BfaI	CTAG	4 cut(s)	183, 429, 690, 966
BfrI	CTTAAG	1 cut(s)	778
BfuAI	ACCTGC	3 cut(s)	28, 352, 454
BisI	GCNGC	7 cut(s)	331, 523, 526, 683, 800, 959, 1061
BlpI	GCTNAGC	1 cut(s)	410
BlsI	GCNGC	7 cut(s)	332, 524, 527, 684, 801, 960, 1062
Bme18I	GGWCC	2 cut(s)	630, 906
BmeRI	GACNNNNNGTC	1 cut(s)	347
BmgT120I	GGNCC	2 cut(s)	630, 906
BmiI	GGNNCC	3 cut(s)	325, 631, 907
BmsI	GCATC	3 cut(s)	90, 753, 1014
Bpu10I	CCTNAGC	1 cut(s)	69
Bpu1102I	GCTNAGC	1 cut(s)	410
BpuEI	CTTGAG	3 cut(s)	457, 718, 872
Bsa29I	ATCGAT	2 cut(s)	12, 39
BsaAI	YACGTR	1 cut(s)	881
BsaI	GGTCTC	1 cut(s)	1040
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse118I	RCCGGY	1 cut(s)	353
Bse3DI	GCAATG	2 cut(s)	161, 286
BseCI	ATCGAT	2 cut(s)	12, 39
BseGI	GGATG	4 cut(s)	84, 178, 832, 1023
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMI	GCAATG	2 cut(s)	161, 286
BseMII	CTCAG	2 cut(s)	424, 483
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	7 cut(s)	342, 509, 512, 694, 811, 970, 1072
BseYI	CCCAGC	3 cut(s)	479, 743, 1013
BsgI	GTGCAG	1 cut(s)	600
BshVI	ATCGAT	2 cut(s)	12, 39
BsiSI	CCGG	2 cut(s)	354, 675
BslFI	GGGAC	2 cut(s)	643, 919
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	6 cut(s)	118, 260, 353, 518, 779, 1040
BsmBI	CGTCTC	2 cut(s)	118, 260
BsmFI	GGGAC	2 cut(s)	643, 919
BsmI	GAATGC	1 cut(s)	528
Bso31I	GGTCTC	1 cut(s)	1040
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	4 cut(s)	392, 653, 929, 988
Bsp1720I	GCTNAGC	1 cut(s)	410
BspACI	CCGC	2 cut(s)	328, 985
BspCNI	CTCAG	2 cut(s)	423, 484
BspDI	ATCGAT	2 cut(s)	12, 39
BspHI	TCATGA	2 cut(s)	564, 1101
BspLI	GGNNCC	3 cut(s)	325, 631, 907
BspMI	ACCTGC	3 cut(s)	28, 352, 454
BspPI	GGATC	1 cut(s)	996
BspTI	CTTAAG	1 cut(s)	778
BspTNI	GGTCTC	1 cut(s)	1040
BsrBI	CCGCTC	1 cut(s)	985
BsrDI	GCAATG	2 cut(s)	161, 286
BsrFI	RCCGGY	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	353
BssMI	GATC	4 cut(s)	392, 653, 929, 988
BssSI	CACGAG	1 cut(s)	1039
Bst2BI	CACGAG	1 cut(s)	1039
Bst4CI	ACNGT	2 cut(s)	861, 1130
BstAFI	CTTAAG	1 cut(s)	778
BstBAI	YACGTR	1 cut(s)	881
BstC8I	GCNNGC	6 cut(s)	25, 211, 355, 560, 680, 1140
BstDEI	CTNAG	4 cut(s)	69, 410, 492, 753
BstEII	GGTNACC	1 cut(s)	31
BstF5I	GGATG	4 cut(s)	84, 178, 832, 1023
BstHHI	GCGC	3 cut(s)	541, 1060, 1099
BstKTI	GATC	4 cut(s)	395, 656, 932, 991
BstMAI	GTCTC	6 cut(s)	118, 260, 353, 518, 779, 1040
BstMBI	GATC	4 cut(s)	392, 653, 929, 988
BstMWI	GCNNNNNNNGC	2 cut(s)	808, 1069
BstNSI	RCATGY	3 cut(s)	337, 1001, 1058
BstPI	GGTNACC	1 cut(s)	31
BstSLI	GKGCMC	1 cut(s)	296
BstV1I	GCAGC	7 cut(s)	342, 509, 512, 694, 811, 970, 1072
BstX2I	RGATCY	1 cut(s)	988
BstYI	RGATCY	1 cut(s)	988
Bsu15I	ATCGAT	2 cut(s)	12, 39
BsuTUI	ATCGAT	2 cut(s)	12, 39
BtsCI	GGATG	4 cut(s)	84, 178, 832, 1023
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	4 cut(s)	588, 656, 836, 857
BveI	ACCTGC	3 cut(s)	28, 352, 454
Cac8I	GCNNGC	6 cut(s)	25, 211, 355, 560, 680, 1140
CciI	TCATGA	2 cut(s)	564, 1101
CfoI	GCGC	3 cut(s)	541, 1060, 1099
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	2 cut(s)	630, 906
ClaI	ATCGAT	2 cut(s)	12, 39
Csp6I	GTAC	3 cut(s)	572, 646, 922
CspCI	CAANNNNNGTGG	2 cut(s)	867, 902
CviQI	GTAC	3 cut(s)	572, 646, 922
DdeI	CTNAG	4 cut(s)	69, 410, 492, 753
DpnI	GATC	4 cut(s)	394, 655, 931, 990
DpnII	GATC	4 cut(s)	392, 653, 929, 988
DriI	GACNNNNNGTC	1 cut(s)	347
Eam1105I	GACNNNNNGTC	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	1040
Eco47I	GGWCC	2 cut(s)	630, 906
Eco57I	CTGAAG	1 cut(s)	725
Eco91I	GGTNACC	1 cut(s)	31
EcoO65I	GGTNACC	1 cut(s)	31
EcoT22I	ATGCAT	2 cut(s)	720, 1120
Esp3I	CGTCTC	2 cut(s)	118, 260
FalI	AAGNNNNNCTT	8 cut(s)	355, 387, 542, 574, 800, 832, 1061, 1093
FaqI	GGGAC	2 cut(s)	643, 919
FauI	CCCGC	2 cut(s)	335, 978
Fnu4HI	GCNGC	7 cut(s)	331, 523, 526, 683, 800, 959, 1061
FokI	GGATG	4 cut(s)	71, 185, 819, 1030
Fsp4HI	GCNGC	7 cut(s)	331, 523, 526, 683, 800, 959, 1061
FspBI	CTAG	4 cut(s)	183, 429, 690, 966
FspI	TGCGCA	1 cut(s)	1059
GlaI	GCGC	3 cut(s)	540, 1059, 1098
GluI	GCNGC	7 cut(s)	331, 523, 526, 683, 800, 959, 1061
GsaI	CCCAGC	3 cut(s)	483, 747, 1017
HapII	CCGG	2 cut(s)	354, 675
HhaI	GCGC	3 cut(s)	541, 1060, 1099
Hin6I	GCGC	3 cut(s)	539, 1058, 1097
HinP1I	GCGC	3 cut(s)	539, 1058, 1097
HinfI	GANTC	3 cut(s)	102, 306, 748
HpaII	CCGG	2 cut(s)	354, 675
HphI	GGTGA	2 cut(s)	25, 940
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	5 cut(s)	139, 190, 311, 323, 341
Hpy8I	GTNNAC	1 cut(s)	96
HpyCH4III	ACNGT	2 cut(s)	861, 1130
HpyCH4IV	ACGT	5 cut(s)	417, 846, 880, 1007, 1145
HpyCH4V	TGCA	6 cut(s)	23, 528, 581, 682, 718, 1118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	808, 1069
HpyF3I	CTNAG	4 cut(s)	69, 410, 492, 753
HpySE526I	ACGT	5 cut(s)	417, 846, 880, 1007, 1145
HspAI	GCGC	3 cut(s)	539, 1058, 1097
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	392, 653, 929, 988
LmnI	GCTCC	1 cut(s)	78
Lsp1109I	GCAGC	7 cut(s)	342, 509, 512, 694, 811, 970, 1072
LweI	GCATC	3 cut(s)	90, 753, 1014
MaeI	CTAG	4 cut(s)	183, 429, 690, 966
MaeII	ACGT	5 cut(s)	417, 846, 880, 1007, 1145
MaeIII	GTNAC	3 cut(s)	31, 552, 1043
MalI	GATC	4 cut(s)	394, 655, 931, 990
MbiI	CCGCTC	1 cut(s)	985
MboI	GATC	4 cut(s)	392, 653, 929, 988
MflI	RGATCY	1 cut(s)	988
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	5 cut(s)	177, 244, 546, 804, 1065
MlyI	GAGTC	1 cut(s)	315
MmeI	TCCRAC	2 cut(s)	301, 364
MnlI	CCTC	7 cut(s)	229, 255, 310, 432, 693, 721, 847
Mph1103I	ATGCAT	2 cut(s)	720, 1120
MreI	CGCCGGCG	1 cut(s)	353
MroNI	GCCGGC	1 cut(s)	353
MseI	TTAA	6 cut(s)	374, 549, 779, 807, 1068, 1125
MspCI	CTTAAG	1 cut(s)	778
MspI	CCGG	2 cut(s)	354, 675
Mva1269I	GAATGC	1 cut(s)	528
MwoI	GCNNNNNNNGC	2 cut(s)	808, 1069
NaeI	GCCGGC	1 cut(s)	355
NdeII	GATC	4 cut(s)	392, 653, 929, 988
NgoMIV	GCCGGC	1 cut(s)	353
NlaIV	GGNNCC	3 cut(s)	325, 631, 907
NmuCI	GTSAC	2 cut(s)	31, 552
NsbI	TGCGCA	1 cut(s)	1059
NsiI	ATGCAT	2 cut(s)	720, 1120
NspI	RCATGY	3 cut(s)	337, 1001, 1058
PagI	TCATGA	2 cut(s)	564, 1101
PciI	ACATGT	1 cut(s)	997
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	1 cut(s)	528
PdiI	GCCGGC	1 cut(s)	355
PfeI	GAWTC	2 cut(s)	102, 748
PkrI	GCNGC	7 cut(s)	332, 524, 527, 684, 801, 960, 1062
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Ppu21I	YACGTR	1 cut(s)	881
PscI	ACATGT	1 cut(s)	997
Psp1406I	AACGTT	2 cut(s)	417, 846
PspEI	GGTNACC	1 cut(s)	31
PspFI	CCCAGC	3 cut(s)	479, 743, 1013
PspN4I	GGNNCC	3 cut(s)	325, 631, 907
PspPI	GGNCC	2 cut(s)	630, 906
PsuI	RGATCY	1 cut(s)	988
RsaI	GTAC	3 cut(s)	573, 647, 923
RsaNI	GTAC	3 cut(s)	572, 646, 922
SaqAI	TTAA	6 cut(s)	374, 549, 779, 807, 1068, 1125
SatI	GCNGC	7 cut(s)	331, 523, 526, 683, 800, 959, 1061
Sau3AI	GATC	4 cut(s)	392, 653, 929, 988
Sau96I	GGNCC	2 cut(s)	630, 906
SchI	GAGTC	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	296
SfaNI	GCATC	3 cut(s)	90, 753, 1014
SgrAI	CRCCGGYG	1 cut(s)	353
SinI	GGWCC	2 cut(s)	630, 906
SmlI	CTYRAG	4 cut(s)	436, 697, 778, 851
SmoI	CTYRAG	4 cut(s)	436, 697, 778, 851
Sse9I	AATT	5 cut(s)	177, 244, 546, 804, 1065
SsiI	CCGC	2 cut(s)	328, 985
SspMI	CTAG	4 cut(s)	183, 429, 690, 966
TaaI	ACNGT	2 cut(s)	861, 1130
TaiI	ACGT	5 cut(s)	420, 849, 883, 1010, 1148
TaqI	TCGA	2 cut(s)	12, 39
TasI	AATT	5 cut(s)	177, 244, 546, 804, 1065
TatI	WGTACW	1 cut(s)	571
TfiI	GAWTC	2 cut(s)	102, 748
Tru1I	TTAA	6 cut(s)	374, 549, 779, 807, 1068, 1125
Tru9I	TTAA	6 cut(s)	374, 549, 779, 807, 1068, 1125
TscAI	CASTG	4 cut(s)	588, 663, 843, 864
TseFI	GTSAC	2 cut(s)	31, 552
TseI	GCWGC	7 cut(s)	330, 522, 525, 682, 799, 958, 1060
Tsp45I	GTSAC	2 cut(s)	31, 552
TspDTI	ATGAA	9 cut(s)	132, 189, 227, 581, 821, 857, 862, 1103, 1118
TspRI	CASTG	4 cut(s)	588, 663, 843, 864
Vha464I	CTTAAG	1 cut(s)	778
VpaK11BI	GGWCC	2 cut(s)	630, 906
XapI	RAATTY	1 cut(s)	177
XbaI	TCTAGA	3 cut(s)	428, 689, 965
XceI	RCATGY	3 cut(s)	337, 1001, 1058
XspI	CTAG	4 cut(s)	183, 429, 690, 966
Zsp2I	ATGCAT	2 cut(s)	720, 1120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.