Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005409.1

Orthogroup ID

OG0015571

Physical Location & Seq

Genomic Coordinates Reverse (-)

78151 .. 79185

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005409.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atgcacctcatagcctatacattaaccaacgagtttgtttctggaaccgaatcatcaattgaaggttattcagacgaagtgaatcctgatagtatcatgggagatagggataactgtgctatttgtttggagaacgtttctcactttgataatgagactgctactcgcttgctgccctgctcgcacttatttcatacagattgcataacaccgtggctggatactaataacttctgtcccctgtgccgtcagtcggtggatgttgcggaggtggtcgacgagtcatcaagaccctcaagccccagacgagacgaaaacaaccaacacaatgatatgcatcggcctgtcgcgggggagccatcattaccctcaagttctctacaagagtactggtggaactacccaccaaactcatgtccgcagttggcctttgtgggcgagcaatttgtaccgttagcccacccgcaaatcccaagtctgccgtggcctgttgtggccgagccaccgagaccgttaccccccacacatggccagtgggtcatagtcgaaaaccaaccgcaaacctcaagactacaattgcttgtccccgctgggccatggacacccattttttcgccgccacccccaagacctcgagggaatgataatctaatgatcatgttcactgtgtgtttagtatttttgtgcttgtgtctacttatgccaccaatgcagtcgcttgggggtcccctgtgccgtcagtcggtggatgttgcggaggtggtcgacgagtcatcaagaccctcaagccccagacgagacgaaaacagccaacacaatgatatgcatcggcctgtcgcgggggagccatcattaccctcaagttctctacaagagtactggtggaactacccaccaaactcaagtccgcagttggcctttgtgggggagccattagtaccgttagcccacccgcaaatcccaagtctgccgtggcctgttgtggccgagccaccgagaccgttaccccccccacacatggccagtgggtcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

344

Amino Acids

38.26

Weight (kDa)

4.81

Isoelectric Point (pI)

70.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015571)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06320 FvH4_6g41400
rosa_chinensis	RchiOBHm_Chr5g0012991
rosa_laevigata	RLG00000031975
rosa_multiflora	Rmu_sc0003892.1_g000024 Rmu_sc0005409.1_g000017 Rmu_sc0005409.1_g000018
rosa_roxburghii	Rroxscaffold_1G00062560 Rroxscaffold_1G00063580 Rroxscaffold_1G00063590
rosa_rugosa	Rorug05G0005800 Rorug05G0005900 Rorug05G0006000
rosa_samantha	Rh5BG096900 Rh5CG109100
rosa_wichuraiana	Rw5G008760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	633
AccI	GTMKAC	3 cut(s)	276, 694, 765
AccII	CGCG	2 cut(s)	350, 839
AclI	AACGTT	1 cut(s)	135
AcoI	YGGCCR	4 cut(s)	495, 529, 984, 1020
AdeI	CACNNNGTG	1 cut(s)	669
AfaI	GTAC	4 cut(s)	389, 450, 878, 939
AfiI	CCNNNNNNNGG	7 cut(s)	253, 350, 527, 742, 839, 924, 1018
AgsI	TTSAA	1 cut(s)	62
Alw26I	GTCTC	5 cut(s)	149, 303, 502, 792, 991
Ama87I	CYCGRG	1 cut(s)	633
ApeKI	GCWGC	1 cut(s)	172
ArsI	GACNNNNNNTTYG	4 cut(s)	460, 492, 949, 981
AspS9I	GGNCC	2 cut(s)	593, 725
AvaI	CYCGRG	1 cut(s)	633
AvaII	GGWCC	1 cut(s)	725
BalI	TGGCCA	2 cut(s)	531, 1022
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	2 cut(s)	367, 856
BceAI	ACGGC	4 cut(s)	231, 466, 720, 955
BciVI	GTATCC	1 cut(s)	214
BclI	TGATCA	1 cut(s)	654
BcoDI	GTCTC	5 cut(s)	149, 303, 502, 792, 991
BfuI	GTATCC	1 cut(s)	214
BisI	GCNGC	2 cut(s)	173, 617
BlsI	GCNGC	2 cut(s)	174, 618
BmcAI	AGTACT	2 cut(s)	389, 878
Bme18I	GGWCC	1 cut(s)	725
BmeT110I	CYCGRG	1 cut(s)	633
BmgT120I	GGNCC	2 cut(s)	593, 725
BmiI	GGNNCC	6 cut(s)	46, 357, 726, 727, 846, 930
BmsI	GCATC	2 cut(s)	346, 835
BpuEI	CTTGAG	6 cut(s)	280, 355, 550, 769, 844, 886
BsaBI	GATNNNNATC	2 cut(s)	336, 825
BsaI	GGTCTC	2 cut(s)	502, 991
BsaJI	CCNNGG	4 cut(s)	212, 482, 596, 971
Bsc4I	CCNNNNNNNGG	7 cut(s)	253, 350, 527, 742, 839, 924, 1018
Bse1I	ACTGG	4 cut(s)	395, 532, 884, 1023
Bse8I	GATNNNNATC	2 cut(s)	336, 825
BseDI	CCNNGG	4 cut(s)	212, 482, 596, 971
BseGI	GGATG	2 cut(s)	265, 754
BseJI	GATNNNNATC	2 cut(s)	336, 825
BseLI	CCNNNNNNNGG	7 cut(s)	253, 350, 527, 742, 839, 924, 1018
BseNI	ACTGG	4 cut(s)	395, 532, 884, 1023
BseXI	GCAGC	1 cut(s)	159
BseYI	CCCAGC	1 cut(s)	590
Bsh1236I	CGCG	2 cut(s)	350, 839
BsiHKCI	CYCGRG	1 cut(s)	633
BslFI	GGGAC	3 cut(s)	222, 569, 711
BslI	CCNNNNNNNGG	7 cut(s)	253, 350, 527, 742, 839, 924, 1018
BsmAI	GTCTC	5 cut(s)	149, 303, 502, 792, 991
BsmBI	CGTCTC	2 cut(s)	303, 792
BsmFI	GGGAC	3 cut(s)	222, 569, 711
Bso31I	GGTCTC	2 cut(s)	502, 991
BsoBI	CYCGRG	1 cut(s)	633
Bsp143I	GATC	1 cut(s)	654
Bsp19I	CCATGG	1 cut(s)	596
BspFNI	CGCG	2 cut(s)	350, 839
BspLI	GGNNCC	6 cut(s)	46, 357, 726, 727, 846, 930
BspTNI	GGTCTC	2 cut(s)	502, 991
BsrI	ACTGG	4 cut(s)	395, 532, 884, 1023
BssECI	CCNNGG	4 cut(s)	212, 482, 596, 971
BssMI	GATC	1 cut(s)	654
BssT1I	CCWWGG	1 cut(s)	596
Bst4CI	ACNGT	7 cut(s)	116, 213, 453, 513, 667, 942, 1002
BstC8I	GCNNGC	3 cut(s)	170, 182, 440
BstDSI	CCRYGG	4 cut(s)	212, 482, 596, 971
BstF5I	GGATG	2 cut(s)	265, 754
BstFNI	CGCG	2 cut(s)	350, 839
BstKTI	GATC	1 cut(s)	657
BstMAI	GTCTC	5 cut(s)	149, 303, 502, 792, 991
BstMBI	GATC	1 cut(s)	654
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 709
BstUI	CGCG	2 cut(s)	350, 839
BstV1I	GCAGC	1 cut(s)	159
BsuI	GTATCC	1 cut(s)	214
BtgI	CCRYGG	4 cut(s)	212, 482, 596, 971
BtsCI	GGATG	2 cut(s)	265, 754
BtsIMutI	CAGTG	3 cut(s)	539, 663, 1030
Cac8I	GCNNGC	3 cut(s)	170, 182, 440
Cfr13I	GGNCC	2 cut(s)	593, 725
Csp6I	GTAC	4 cut(s)	388, 449, 877, 938
CviAII	CATG	6 cut(s)	97, 414, 527, 597, 658, 1018
CviQI	GTAC	4 cut(s)	388, 449, 877, 938
DpnI	GATC	1 cut(s)	656
DpnII	GATC	1 cut(s)	654
DraIII	CACNNNGTG	1 cut(s)	669
EaeI	YGGCCR	4 cut(s)	495, 529, 984, 1020
Eco130I	CCWWGG	1 cut(s)	596
Eco31I	GGTCTC	2 cut(s)	502, 991
Eco47I	GGWCC	1 cut(s)	725
Eco88I	CYCGRG	1 cut(s)	633
EcoO109I	RGGNCCY	1 cut(s)	725
EcoT14I	CCWWGG	1 cut(s)	596
EcoT22I	ATGCAT	2 cut(s)	339, 828
ErhI	CCWWGG	1 cut(s)	596
Esp3I	CGTCTC	2 cut(s)	303, 792
FaeI	CATG	6 cut(s)	100, 417, 530, 600, 661, 1021
FaqI	GGGAC	3 cut(s)	222, 569, 711
FatI	CATG	6 cut(s)	96, 413, 526, 596, 657, 1017
FauI	CCCGC	5 cut(s)	343, 471, 595, 832, 960
FbaI	TGATCA	1 cut(s)	654
FblI	GTMKAC	3 cut(s)	276, 694, 765
Fnu4HI	GCNGC	2 cut(s)	173, 617
FokI	GGATG	2 cut(s)	272, 761
Fsp4HI	GCNGC	2 cut(s)	173, 617
GluI	GCNGC	2 cut(s)	173, 617
GsaI	CCCAGC	1 cut(s)	594
Hin1II	CATG	6 cut(s)	100, 417, 530, 600, 661, 1021
HincII	GTYRAC	2 cut(s)	277, 766
HindII	GTYRAC	2 cut(s)	277, 766
HinfI	GANTC	4 cut(s)	50, 82, 281, 770
Hpy166II	GTNNAC	4 cut(s)	277, 663, 695, 766
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	5 cut(s)	42, 86, 288, 567, 777
Hpy8I	GTNNAC	4 cut(s)	277, 663, 695, 766
Hpy99I	CGWCG	2 cut(s)	281, 770
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	7 cut(s)	116, 213, 453, 513, 667, 942, 1002
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	5 cut(s)	4, 204, 337, 712, 826
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 709
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	6 cut(s)	100, 417, 530, 600, 661, 1021
KflI	GGGWCCC	1 cut(s)	725
Ksp22I	TGATCA	1 cut(s)	654
Kzo9I	GATC	1 cut(s)	654
LmnI	GCTCC	3 cut(s)	355, 844, 928
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	2 cut(s)	346, 835
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	2 cut(s)	513, 1002
MalI	GATC	1 cut(s)	656
MboI	GATC	1 cut(s)	654
MfeI	CAATTG	2 cut(s)	57, 575
MlsI	TGGCCA	2 cut(s)	531, 1022
MluCI	AATT	3 cut(s)	57, 443, 575
MluNI	TGGCCA	2 cut(s)	531, 1022
MlyI	GAGTC	2 cut(s)	290, 779
Mox20I	TGGCCA	2 cut(s)	531, 1022
Mph1103I	ATGCAT	2 cut(s)	339, 828
MscI	TGGCCA	2 cut(s)	531, 1022
MseI	TTAA	1 cut(s)	23
Msp20I	TGGCCA	2 cut(s)	531, 1022
MspA1I	CMGCKG	1 cut(s)	590
MunI	CAATTG	2 cut(s)	57, 575
MvnI	CGCG	2 cut(s)	350, 839
MwoI	GCNNNNNNNGC	2 cut(s)	181, 709
NcoI	CCATGG	1 cut(s)	596
NdeII	GATC	1 cut(s)	654
NlaIII	CATG	6 cut(s)	100, 417, 530, 600, 661, 1021
NlaIV	GGNNCC	6 cut(s)	46, 357, 726, 727, 846, 930
NmeAIII	GCCGAG	2 cut(s)	523, 1012
NsiI	ATGCAT	2 cut(s)	339, 828
PaeR7I	CTCGAG	1 cut(s)	633
PfeI	GAWTC	2 cut(s)	50, 82
PkrI	GCNGC	2 cut(s)	174, 618
PleI	GAGTC	2 cut(s)	289, 778
PpsI	GAGTC	2 cut(s)	289, 778
PpuMI	RGGWCCY	1 cut(s)	725
Psp1406I	AACGTT	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	725
PspFI	CCCAGC	1 cut(s)	590
PspN4I	GGNNCC	6 cut(s)	46, 357, 726, 727, 846, 930
PspPI	GGNCC	2 cut(s)	593, 725
PspPPI	RGGWCCY	1 cut(s)	725
PspXI	VCTCGAGB	1 cut(s)	633
RsaI	GTAC	4 cut(s)	389, 450, 878, 939
RsaNI	GTAC	4 cut(s)	388, 449, 877, 938
SalI	GTCGAC	2 cut(s)	275, 764
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	2 cut(s)	173, 617
Sau3AI	GATC	1 cut(s)	654
Sau96I	GGNCC	2 cut(s)	593, 725
ScaI	AGTACT	2 cut(s)	389, 878
SchI	GAGTC	2 cut(s)	290, 779
SetI	ASST	7 cut(s)	9, 67, 138, 273, 566, 634, 762
SfaNI	GCATC	2 cut(s)	346, 835
Sfr274I	CTCGAG	1 cut(s)	633
SinI	GGWCC	1 cut(s)	725
SlaI	CTCGAG	1 cut(s)	633
SmlI	CTYRAG	7 cut(s)	295, 370, 565, 633, 784, 859, 901
SmoI	CTYRAG	7 cut(s)	295, 370, 565, 633, 784, 859, 901
Sse9I	AATT	3 cut(s)	57, 443, 575
StyI	CCWWGG	1 cut(s)	596
TaaI	ACNGT	7 cut(s)	116, 213, 453, 513, 667, 942, 1002
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	4 cut(s)	276, 546, 634, 765
TasI	AATT	3 cut(s)	57, 443, 575
TatI	WGTACW	2 cut(s)	387, 876
TauI	GCSGC	1 cut(s)	619
TfiI	GAWTC	2 cut(s)	50, 82
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	3 cut(s)	539, 670, 1030
TseI	GCWGC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	182
TspRI	CASTG	3 cut(s)	539, 670, 1030
VpaK11BI	GGWCC	1 cut(s)	725
XcmI	CCANNNNNNNNNTGG	2 cut(s)	480, 969
XhoI	CTCGAG	1 cut(s)	633
XmiI	GTMKAC	3 cut(s)	276, 694, 765
ZrmI	AGTACT	2 cut(s)	389, 878
Zsp2I	ATGCAT	2 cut(s)	339, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.